Wall clock time and date at job start Sun Mar 29 2020 22:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40076 * 126.03744 * 2 1 4 4 C 1.30838 * 108.20478 * 179.97438 * 3 2 1 5 5 C 1.39866 * 108.20506 * 0.02562 * 4 3 2 6 6 C 1.34946 * 126.03594 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.12893 * 0.04836 * 6 2 1 8 8 H 1.08998 * 109.87076 * 334.09798 * 7 6 2 9 9 C 1.54327 * 109.88309 * 95.27237 * 7 6 2 10 10 C 1.55154 * 102.94180 * 141.61173 * 9 7 6 11 11 C 1.54913 * 101.58295 * 324.49533 * 10 9 7 12 12 N 1.47018 * 109.88253 * 213.07985 * 7 6 2 13 13 C 1.36940 * 125.64439 * 61.68234 * 12 7 6 14 14 H 1.08002 * 120.00369 * 359.97438 * 13 12 7 15 15 C 1.38815 * 119.99486 * 180.02562 * 13 12 7 16 16 N 1.31619 * 120.00504 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99719 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47023 * 59.99661 * 17 15 13 19 19 H 1.48495 * 109.46926 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47123 * 299.99764 * 17 15 13 21 21 H 1.08995 * 109.47070 * 264.81718 * 1 2 3 22 22 H 1.09001 * 109.46510 * 24.82064 * 1 2 3 23 23 H 1.09000 * 109.46641 * 144.81489 * 1 2 3 24 24 H 1.08002 * 125.89494 * 179.97438 * 4 3 2 25 25 H 1.07997 * 126.04117 * 180.25846 * 5 4 3 26 26 H 1.08998 * 110.71863 * 259.97695 * 9 7 6 27 27 H 1.09005 * 110.72049 * 23.25070 * 9 7 6 28 28 H 1.08999 * 111.00220 * 206.42717 * 10 9 7 29 29 H 1.08999 * 111.00686 * 82.57744 * 10 9 7 30 30 H 1.08987 * 110.36993 * 278.17490 * 11 10 9 31 31 H 1.09002 * 110.45977 * 155.89364 * 11 10 9 32 32 H 0.96996 * 120.00510 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0006 5 6 3.5438 -0.6666 0.0003 6 6 2.2589 -1.0912 0.0005 7 6 1.7974 -2.5258 0.0001 8 1 0.8058 -2.5961 0.4472 9 6 1.7645 -3.0663 -1.4451 10 6 2.2703 -4.5240 -1.2825 11 6 3.3200 -4.3651 -0.1544 12 7 2.7465 -3.3567 0.7553 13 6 3.0473 -3.2174 2.0840 14 1 2.5705 -2.4436 2.6674 15 6 3.9658 -4.0702 2.6807 16 7 4.5472 -5.0129 1.9696 17 14 4.3767 -3.8798 4.4930 18 1 3.1438 -4.0580 5.3014 19 1 5.3770 -4.9053 4.8840 20 1 4.9354 -2.5253 4.7342 21 1 -0.3633 -0.0928 1.0234 22 1 -0.3632 0.9328 -0.4314 23 1 -0.3632 -0.8399 -0.5922 24 1 4.4054 1.3710 0.0003 25 1 4.4211 -1.2963 0.0046 26 1 0.7483 -3.0523 -1.8390 27 1 2.4357 -2.4944 -2.0860 28 1 2.7354 -4.8809 -2.2014 29 1 1.4615 -5.1860 -0.9732 30 1 4.2664 -4.0120 -0.5638 31 1 3.4630 -5.3105 0.3689 32 1 5.1888 -5.6090 2.3866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932271317.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:06 Heat of formation + Delta-G solvation = 87.242562 kcal Electronic energy + Delta-G solvation = -15457.606915 eV Core-core repulsion = 13034.048016 eV Total energy + Delta-G solvation = -2423.558899 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.07930 -38.96825 -34.63935 -34.01278 -31.94590 -30.97429 -28.38684 -27.46639 -26.47804 -22.73164 -21.87151 -21.79315 -20.31903 -18.77697 -17.73304 -16.94406 -16.24260 -15.87242 -15.66737 -15.04245 -14.52225 -14.06850 -13.79969 -13.61370 -13.43420 -13.22574 -13.07596 -12.94448 -12.69814 -12.32411 -12.07268 -11.86239 -11.53268 -11.45204 -11.35303 -10.73418 -10.06075 -9.33785 -8.87817 -7.75951 -5.20243 1.01952 1.45030 1.47307 1.53523 1.76297 2.01385 2.49488 3.32081 3.67122 3.83334 3.83588 4.04970 4.21663 4.34557 4.43314 4.44998 4.58390 4.66185 4.84844 4.89721 4.97044 5.08792 5.19505 5.26601 5.48939 5.55918 5.71377 5.85034 5.85673 6.22775 6.35074 6.85192 7.12694 7.78451 8.40496 9.24703 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025645 B = 0.011346 C = 0.009128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.559976 B = 2467.192517 C = 3066.851617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.381 5.381 3 N -0.333 5.333 4 C 0.037 3.963 5 C -0.275 4.275 6 C 0.087 3.913 7 C 0.212 3.788 8 H 0.053 0.947 9 C -0.106 4.106 10 C -0.131 4.131 11 C 0.151 3.849 12 N -0.597 5.597 13 C -0.223 4.223 14 H 0.065 0.935 15 C -0.057 4.057 16 N -0.943 5.943 17 Si 0.969 3.031 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.286 1.286 21 H 0.075 0.925 22 H 0.103 0.897 23 H 0.104 0.896 24 H 0.203 0.797 25 H 0.116 0.884 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.071 0.929 30 H -0.015 1.015 31 H 0.077 0.923 32 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.655 5.270 -6.702 11.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.165 5.165 3 N -0.155 5.155 4 C -0.147 4.147 5 C -0.304 4.304 6 C -0.044 4.044 7 C 0.102 3.898 8 H 0.071 0.929 9 C -0.145 4.145 10 C -0.169 4.169 11 C 0.026 3.974 12 N -0.320 5.320 13 C -0.352 4.352 14 H 0.083 0.917 15 C -0.250 4.250 16 N -0.592 5.592 17 Si 0.798 3.202 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.213 1.213 21 H 0.093 0.907 22 H 0.122 0.878 23 H 0.123 0.877 24 H 0.220 0.780 25 H 0.135 0.865 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.003 0.997 31 H 0.095 0.905 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.472 6.173 -6.528 12.349 hybrid contribution 1.395 -0.551 1.235 1.943 sum -7.077 5.622 -5.293 10.475 Atomic orbital electron populations 1.22107 0.72727 1.05840 1.03970 1.48745 1.07506 1.02778 1.57458 1.77102 1.02128 1.09195 1.27108 1.24125 0.95807 0.94887 0.99886 1.21096 0.96907 0.94773 1.17659 1.22468 0.91704 0.91777 0.98415 1.19802 0.93046 0.83096 0.93865 0.92926 1.22533 1.02636 0.96158 0.93144 1.22879 0.99143 0.95987 0.98898 1.21821 0.91939 0.94349 0.89281 1.44716 1.47946 1.33847 1.05528 1.19079 1.19318 1.12116 0.84687 0.91671 1.25432 0.99372 0.98439 1.01746 1.70014 1.32184 1.21672 1.35310 0.85296 0.77579 0.76734 0.80594 1.20353 1.21654 1.21308 0.90694 0.87839 0.87724 0.78046 0.86545 0.88019 0.91766 0.89672 0.91001 0.99651 0.90495 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.22 10.98 127.77 1.40 3.62 16 2 N -0.38 -13.37 4.01 -356.02 -1.43 -14.80 16 3 N -0.33 -12.40 12.58 -57.02 -0.72 -13.12 16 4 C 0.04 1.38 12.03 85.24 1.02 2.41 16 5 C -0.27 -11.66 10.17 21.99 0.22 -11.44 16 6 C 0.09 3.45 5.57 41.41 0.23 3.68 16 7 C 0.21 8.33 3.22 44.60 0.14 8.47 16 8 H 0.05 1.98 7.68 -2.39 -0.02 1.96 16 9 C -0.11 -3.36 6.47 31.78 0.21 -3.15 16 10 C -0.13 -4.50 7.08 31.99 0.23 -4.27 16 11 C 0.15 7.18 5.89 86.86 0.51 7.69 16 12 N -0.60 -29.56 2.80 -672.38 -1.88 -31.44 16 13 C -0.22 -12.34 9.82 84.03 0.83 -11.51 16 14 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 15 C -0.06 -3.20 5.49 84.86 0.47 -2.73 16 16 N -0.94 -55.13 10.09 21.65 0.22 -54.91 16 17 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 21 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.10 1.98 7.83 -2.39 -0.02 1.96 16 24 H 0.20 5.85 8.06 -2.91 -0.02 5.83 16 25 H 0.12 5.53 8.06 -2.91 -0.02 5.50 16 26 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.06 2.07 7.84 -2.38 -0.02 2.05 16 28 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H 0.08 4.18 5.87 -2.39 -0.01 4.16 16 32 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -67.31 267.39 4.57 -62.74 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.09 Total: 10.64 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.26 Total: -7.24 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -3.81 Total: -114.27 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -67.31 4.57 -62.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932271317.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.979 kcal (2) G-P(sol) polarization free energy of solvation -67.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds