Wall clock time and date at job start Sun Mar 29 2020 22:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47160 * 2 1 4 4 C 1.35643 * 126.49602 * 264.83301 * 3 2 1 5 5 N 1.30773 * 108.73460 * 180.11422 * 4 3 2 6 6 C 1.33472 * 109.09893 * 0.14614 * 5 4 3 7 7 C 1.35166 * 108.22154 * 359.79165 * 6 5 4 8 8 C 1.50615 * 124.87940 * 180.17272 * 7 6 5 9 9 C 1.53415 * 108.80550 * 342.40497 * 8 7 6 10 10 N 1.47055 * 109.09005 * 45.06694 * 9 8 7 11 11 C 1.36935 * 120.81183 * 115.65693 * 10 9 8 12 12 H 1.08002 * 119.99915 * 335.29846 * 11 10 9 13 13 C 1.38812 * 119.99876 * 155.29801 * 11 10 9 14 14 N 1.31610 * 120.00255 * 344.17400 * 13 11 10 15 15 Si 1.86805 * 119.99500 * 164.17762 * 13 11 10 16 16 H 1.48496 * 109.47528 * 59.99843 * 15 13 11 17 17 H 1.48507 * 109.46569 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47290 * 299.99474 * 15 13 11 19 19 C 1.47404 * 118.37944 * 295.68054 * 10 9 8 20 20 H 1.08998 * 109.47007 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46894 * 300.00098 * 1 2 3 22 22 H 1.09000 * 109.47158 * 60.00069 * 1 2 3 23 23 H 1.09001 * 109.46894 * 239.99902 * 2 1 3 24 24 H 1.09000 * 109.46701 * 120.00204 * 2 1 3 25 25 H 1.08000 * 125.64829 * 0.22951 * 4 3 2 26 26 H 1.09005 * 109.57938 * 222.61285 * 8 7 6 27 27 H 1.08998 * 109.69958 * 102.27151 * 8 7 6 28 28 H 1.09005 * 109.53212 * 285.18184 * 9 8 7 29 29 H 1.09000 * 109.53633 * 164.94999 * 9 8 7 30 30 H 0.97000 * 120.00060 * 180.02562 * 14 13 11 31 31 H 1.09004 * 109.89574 * 163.74720 * 19 10 9 32 32 H 1.09007 * 109.89340 * 284.78700 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3799 2.1091 -1.0860 5 7 2.7635 3.2944 -0.6885 6 6 2.6651 3.3622 0.6409 7 6 2.1983 2.1764 1.0912 8 6 1.9420 1.8449 2.5379 9 6 2.6881 2.8570 3.4168 10 7 2.4714 4.2098 2.8825 11 6 1.7959 5.1520 3.6113 12 1 1.0887 4.8448 4.3676 13 6 2.0202 6.5019 3.3781 14 7 3.0805 6.8852 2.6993 15 14 0.8167 7.7744 4.0279 16 1 0.7406 7.6737 5.5074 17 1 1.2801 9.1331 3.6478 18 1 -0.5268 7.5280 3.4452 19 6 2.9986 4.5268 1.5429 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.3535 1.7672 -2.1101 26 1 2.3034 0.8390 2.7518 27 1 0.8731 1.9004 2.7437 28 1 3.7540 2.6291 3.4106 29 1 2.3086 2.8031 4.4372 30 1 3.2374 7.8285 2.5367 31 1 2.5293 5.4351 1.1649 32 1 4.0793 4.6606 1.5918 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933262306.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:38 Heat of formation + Delta-G solvation = 82.691344 kcal Electronic energy + Delta-G solvation = -15288.603304 eV Core-core repulsion = 12864.847050 eV Total energy + Delta-G solvation = -2423.756254 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.54897 -36.18321 -34.68372 -32.40776 -30.32391 -29.20046 -28.42170 -25.26980 -23.60380 -22.86011 -21.28621 -19.96584 -18.38083 -16.63672 -16.33259 -15.12225 -14.70627 -14.45270 -13.87204 -13.60396 -13.44488 -12.99964 -12.65840 -12.31837 -12.05127 -12.02271 -11.41887 -11.16122 -11.01404 -10.73319 -10.55709 -10.36628 -9.97275 -9.84322 -9.16279 -8.94872 -8.46454 -7.29218 -6.71177 -5.73228 -3.13860 2.62523 3.20059 3.43735 3.49764 3.50854 3.89935 4.53569 4.65370 4.95193 5.05064 5.14259 5.22540 5.46995 5.50287 5.55947 5.58248 5.81565 5.95561 5.98086 6.20848 6.30496 6.55051 6.71209 6.83446 7.01288 7.34961 7.54475 7.75032 7.80460 7.89979 8.44951 8.80120 9.25988 9.88006 10.44495 11.37230 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040342 B = 0.008322 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.895088 B = 3363.902432 C = 3552.164444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.461 5.461 4 C 0.148 3.852 5 N -0.484 5.484 6 C 0.001 3.999 7 C -0.024 4.024 8 C -0.056 4.056 9 C 0.151 3.849 10 N -0.592 5.592 11 C -0.255 4.255 12 H 0.068 0.932 13 C 0.004 3.996 14 N -0.903 5.903 15 Si 0.905 3.095 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.284 1.284 19 C 0.255 3.745 20 H 0.070 0.930 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.195 0.805 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.256 0.744 31 H 0.094 0.906 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 -14.015 -4.219 15.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.147 5.147 4 C -0.131 4.131 5 N -0.203 5.203 6 C -0.130 4.130 7 C -0.137 4.137 8 C -0.097 4.097 9 C 0.023 3.977 10 N -0.315 5.315 11 C -0.384 4.384 12 H 0.086 0.914 13 C -0.195 4.195 14 N -0.547 5.547 15 Si 0.734 3.266 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.211 1.211 19 C 0.129 3.871 20 H 0.089 0.911 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.105 0.895 24 H 0.103 0.897 25 H 0.211 0.789 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.097 -13.315 -4.753 14.473 hybrid contribution -0.980 -0.154 0.526 1.123 sum -4.076 -13.469 -4.227 14.693 Atomic orbital electron populations 1.22140 0.94584 1.02456 1.03404 1.21662 0.95352 0.81028 1.03717 1.45283 1.49992 1.11957 1.07431 1.24873 1.06302 0.89019 0.92948 1.69967 1.20148 1.17735 1.12406 1.22189 1.03388 0.97214 0.90204 1.20959 1.09948 0.92887 0.89951 1.20699 1.01296 0.99260 0.88455 1.20849 0.96277 0.85572 0.94982 1.44109 1.65511 1.07897 1.13934 1.19105 1.16196 0.85965 1.17176 0.91402 1.25012 0.96809 0.97430 1.00250 1.70004 1.25277 1.15365 1.44032 0.86339 0.80953 0.80774 0.78496 1.20910 1.21550 1.21098 1.19166 0.96756 0.90809 0.80373 0.91082 0.91694 0.91996 0.89483 0.89744 0.78855 0.92723 0.91547 0.95487 0.91749 0.93383 0.88831 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.11 1.15 6.72 -4.04 -0.03 1.12 16 3 N -0.46 -7.53 2.75 -113.82 -0.31 -7.84 16 4 C 0.15 2.57 12.59 -89.60 -1.13 1.44 16 5 N -0.48 -10.76 11.25 -10.60 -0.12 -10.88 16 6 C 0.00 0.02 7.08 -82.81 -0.59 -0.56 16 7 C -0.02 -0.49 6.77 -81.78 -0.55 -1.04 16 8 C -0.06 -1.02 6.19 -27.71 -0.17 -1.19 16 9 C 0.15 3.21 6.46 -3.52 -0.02 3.18 16 10 N -0.59 -15.52 2.98 -172.97 -0.52 -16.04 16 11 C -0.26 -7.15 9.64 -15.06 -0.15 -7.30 16 12 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 13 C 0.00 0.11 4.98 -17.43 -0.09 0.02 16 14 N -0.90 -26.97 11.09 55.49 0.62 -26.35 16 15 Si 0.90 22.17 29.58 -169.99 -5.03 17.14 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 C 0.26 6.82 5.37 -4.54 -0.02 6.79 16 20 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.09 0.72 8.13 -51.93 -0.42 0.29 16 24 H 0.08 0.84 7.86 -51.93 -0.41 0.44 16 25 H 0.19 2.44 8.06 -52.49 -0.42 2.01 16 26 H 0.05 0.81 7.91 -51.93 -0.41 0.40 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.09 2.78 6.40 -51.93 -0.33 2.45 16 32 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 266.35 15.07 4.01 4.01 Total: -1.00 -32.99 266.35 -8.21 -41.20 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.49 Total: -2.41 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.37 Total: 1.17 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.33 Total: -61.11 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.99 -8.21 -41.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933262306.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.891 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds