Wall clock time and date at job start Sun Mar 29 2020 22:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47160 * 2 1 4 4 C 1.35643 * 126.49602 * 264.83301 * 3 2 1 5 5 N 1.30773 * 108.73460 * 180.11422 * 4 3 2 6 6 C 1.33472 * 109.09893 * 0.14614 * 5 4 3 7 7 C 1.35166 * 108.22154 * 359.79165 * 6 5 4 8 8 C 1.50615 * 124.87940 * 180.17272 * 7 6 5 9 9 C 1.53415 * 108.80550 * 342.40497 * 8 7 6 10 10 N 1.47055 * 109.09005 * 45.06694 * 9 8 7 11 11 C 1.36935 * 120.81183 * 115.65693 * 10 9 8 12 12 H 1.08002 * 119.99915 * 335.29846 * 11 10 9 13 13 C 1.38812 * 119.99876 * 155.29801 * 11 10 9 14 14 N 1.31610 * 120.00255 * 344.17400 * 13 11 10 15 15 Si 1.86805 * 119.99500 * 164.17762 * 13 11 10 16 16 H 1.48496 * 109.47528 * 59.99843 * 15 13 11 17 17 H 1.48507 * 109.46569 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47290 * 299.99474 * 15 13 11 19 19 C 1.47404 * 118.37944 * 295.68054 * 10 9 8 20 20 H 1.08998 * 109.47007 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46894 * 300.00098 * 1 2 3 22 22 H 1.09000 * 109.47158 * 60.00069 * 1 2 3 23 23 H 1.09001 * 109.46894 * 239.99902 * 2 1 3 24 24 H 1.09000 * 109.46701 * 120.00204 * 2 1 3 25 25 H 1.08000 * 125.64829 * 0.22951 * 4 3 2 26 26 H 1.09005 * 109.57938 * 222.61285 * 8 7 6 27 27 H 1.08998 * 109.69958 * 102.27151 * 8 7 6 28 28 H 1.09005 * 109.53212 * 285.18184 * 9 8 7 29 29 H 1.09000 * 109.53633 * 164.94999 * 9 8 7 30 30 H 0.97000 * 120.00060 * 180.02562 * 14 13 11 31 31 H 1.09004 * 109.89574 * 163.74720 * 19 10 9 32 32 H 1.09007 * 109.89340 * 284.78700 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3799 2.1091 -1.0860 5 7 2.7635 3.2944 -0.6885 6 6 2.6651 3.3622 0.6409 7 6 2.1983 2.1764 1.0912 8 6 1.9420 1.8449 2.5379 9 6 2.6881 2.8570 3.4168 10 7 2.4714 4.2098 2.8825 11 6 1.7959 5.1520 3.6113 12 1 1.0887 4.8448 4.3676 13 6 2.0202 6.5019 3.3781 14 7 3.0805 6.8852 2.6993 15 14 0.8167 7.7744 4.0279 16 1 0.7406 7.6737 5.5074 17 1 1.2801 9.1331 3.6478 18 1 -0.5268 7.5280 3.4452 19 6 2.9986 4.5268 1.5429 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.3535 1.7672 -2.1101 26 1 2.3034 0.8390 2.7518 27 1 0.8731 1.9004 2.7437 28 1 3.7540 2.6291 3.4106 29 1 2.3086 2.8031 4.4372 30 1 3.2374 7.8285 2.5367 31 1 2.5293 5.4351 1.1649 32 1 4.0793 4.6606 1.5918 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933262306.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:38 Heat of formation + Delta-G solvation = 62.054845 kcal Electronic energy + Delta-G solvation = -15289.498170 eV Core-core repulsion = 12864.847050 eV Total energy + Delta-G solvation = -2424.651120 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.01085 -38.01620 -35.87892 -34.33463 -31.83474 -30.80021 -30.07527 -27.18062 -24.85873 -24.39114 -23.06925 -21.33666 -20.06553 -18.44301 -17.81744 -16.60064 -16.52182 -15.78190 -15.38497 -15.20339 -15.04340 -14.54377 -14.18579 -13.73711 -13.46441 -13.24997 -12.98882 -12.77370 -12.65017 -12.36934 -12.18951 -12.16256 -11.92608 -11.75954 -10.73502 -10.66976 -10.28959 -8.89829 -8.80169 -7.88057 -5.32307 1.19825 1.46280 1.50901 1.57146 1.99241 2.28422 2.51035 3.27598 3.55301 3.82947 3.86267 3.98559 4.15800 4.26347 4.38656 4.47461 4.61247 4.67513 4.75674 4.89027 4.97638 5.09801 5.15368 5.24519 5.28594 5.48583 5.59849 5.68882 5.95231 6.33132 6.52912 7.07240 7.32495 7.81231 8.35388 9.21406 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040342 B = 0.008322 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.895088 B = 3363.902432 C = 3552.164444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.452 5.452 4 C 0.169 3.831 5 N -0.535 5.535 6 C -0.051 4.051 7 C -0.016 4.016 8 C -0.044 4.044 9 C 0.144 3.856 10 N -0.610 5.610 11 C -0.265 4.265 12 H 0.079 0.921 13 C -0.056 4.056 14 N -0.940 5.940 15 Si 0.973 3.027 16 H -0.267 1.267 17 H -0.295 1.295 18 H -0.281 1.281 19 C 0.274 3.726 20 H 0.104 0.896 21 H 0.042 0.958 22 H 0.054 0.946 23 H 0.124 0.876 24 H 0.101 0.899 25 H 0.244 0.756 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.250 0.750 31 H 0.048 0.952 32 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.961 -17.227 -4.405 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.135 5.135 4 C -0.112 4.112 5 N -0.255 5.255 6 C -0.181 4.181 7 C -0.132 4.132 8 C -0.084 4.084 9 C 0.018 3.982 10 N -0.333 5.333 11 C -0.394 4.394 12 H 0.097 0.903 13 C -0.251 4.251 14 N -0.586 5.586 15 Si 0.800 3.200 16 H -0.192 1.192 17 H -0.221 1.221 18 H -0.207 1.207 19 C 0.147 3.853 20 H 0.123 0.877 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.142 0.858 24 H 0.119 0.881 25 H 0.260 0.740 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -4.698 -16.597 -4.919 17.937 hybrid contribution -0.477 0.702 0.519 0.995 sum -5.175 -15.895 -4.400 17.286 Atomic orbital electron populations 1.22123 0.93817 1.04218 1.01973 1.22184 0.95892 0.77862 1.06444 1.45548 1.48643 1.13613 1.05711 1.25748 1.03120 0.87460 0.94918 1.69822 1.22599 1.21009 1.12047 1.21651 1.07673 0.97760 0.91002 1.21032 1.08232 0.92260 0.91648 1.20565 1.01173 1.00177 0.86487 1.21082 0.96815 0.83928 0.96402 1.44342 1.65536 1.09555 1.13902 1.19556 1.16169 0.86717 1.17006 0.90288 1.25890 0.98450 0.99591 1.01152 1.70205 1.27319 1.15119 1.45968 0.85258 0.78451 0.77674 0.78570 1.19236 1.22145 1.20739 1.18493 0.93878 0.91019 0.81936 0.87715 0.93897 0.92665 0.85786 0.88120 0.73988 0.88268 0.90938 0.95748 0.90347 0.94099 0.93396 0.98231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.24 71.98 0.74 -1.78 16 2 C 0.10 1.58 6.72 86.38 0.58 2.16 16 3 N -0.45 -13.22 2.75 -514.02 -1.41 -14.63 16 4 C 0.17 5.40 12.59 179.99 2.27 7.67 16 5 N -0.54 -24.02 11.25 -187.44 -2.11 -26.13 16 6 C -0.05 -2.49 7.08 41.71 0.30 -2.19 16 7 C -0.02 -0.61 6.77 41.14 0.28 -0.33 16 8 C -0.04 -1.48 6.19 29.96 0.19 -1.29 16 9 C 0.14 6.03 6.46 86.41 0.56 6.59 16 10 N -0.61 -32.99 2.98 -701.16 -2.09 -35.08 16 11 C -0.26 -15.17 9.64 84.03 0.81 -14.36 16 12 H 0.08 4.24 7.88 -2.91 -0.02 4.22 16 13 C -0.06 -3.28 4.98 84.86 0.42 -2.86 16 14 N -0.94 -59.39 11.09 21.65 0.24 -59.15 16 15 Si 0.97 46.73 29.58 68.60 2.03 48.76 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 C 0.27 15.61 5.37 85.57 0.46 16.07 16 20 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.12 1.22 8.13 -2.39 -0.02 1.20 16 24 H 0.10 1.41 7.86 -2.39 -0.02 1.39 16 25 H 0.24 4.97 8.06 -2.91 -0.02 4.95 16 26 H 0.10 2.49 7.91 -2.38 -0.02 2.47 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.08 3.01 7.93 -2.39 -0.02 2.99 16 30 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.05 3.09 6.40 -2.38 -0.02 3.08 16 32 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 Total: -1.00 -77.47 266.35 4.35 -73.12 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 1.10 Total: 3.44 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 6.59 Total: 9.67 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -5.37 Total: -134.99 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -77.47 4.35 -73.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933262306.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.175 kcal (2) G-P(sol) polarization free energy of solvation -77.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds