Wall clock time and date at job start Sun Mar 29 2020 21:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42902 * 112.93352 * 179.43676 * 3 2 1 5 5 C 1.53927 * 113.73626 * 47.72976 * 3 2 1 6 6 N 1.47963 * 86.18019 * 221.91795 * 5 3 2 7 7 C 1.46907 * 110.99812 * 137.58089 * 6 5 3 8 8 C 1.53005 * 109.46737 * 79.19592 * 7 6 5 9 9 C 1.50703 * 115.54429 * 176.68298 * 8 7 6 10 10 H 1.07998 * 119.99775 * 146.80329 * 9 8 7 11 11 C 1.37874 * 120.00519 * 326.80317 * 9 8 7 12 12 N 1.31516 * 119.99482 * 340.70816 * 11 9 8 13 13 Si 1.86790 * 120.00387 * 160.70516 * 11 9 8 14 14 H 1.48504 * 109.47106 * 90.00080 * 13 11 9 15 15 H 1.48497 * 109.47549 * 210.00120 * 13 11 9 16 16 H 1.48505 * 109.47366 * 330.00330 * 13 11 9 17 17 C 1.52993 * 117.50149 * 31.01755 * 8 7 6 18 18 C 1.52999 * 117.49987 * 322.35193 * 8 7 6 19 19 C 1.47965 * 90.76247 * 24.68951 * 6 5 3 20 20 H 4.45183 * 5.14218 * 179.97438 * 4 1 2 21 21 H 0.96697 * 113.99690 * 309.66215 * 4 3 2 22 22 H 1.09002 * 113.76216 * 336.23611 * 5 3 2 23 23 H 1.09001 * 113.76200 * 107.59987 * 5 3 2 24 24 H 1.08997 * 109.46870 * 199.18974 * 7 6 5 25 25 H 1.08994 * 109.46863 * 319.19793 * 7 6 5 26 26 H 0.97008 * 119.99895 * 180.02562 * 12 11 9 27 27 H 1.08999 * 117.50203 * 359.97438 * 17 8 7 28 28 H 1.08998 * 117.50495 * 145.02070 * 17 8 7 29 29 H 1.08996 * 117.49612 * 214.98199 * 18 8 7 30 30 H 1.08996 * 117.50054 * 359.97438 * 18 8 7 31 31 H 1.08990 * 113.75702 * 220.99177 * 19 6 5 32 32 H 1.08998 * 113.75589 * 89.62277 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2023 1.3169 -0.0129 5 6 3.2661 -0.9468 -1.0427 6 7 4.2322 -1.3181 0.0147 7 6 4.4633 -2.7688 0.0308 8 6 5.4377 -3.1424 -1.0882 9 6 5.8329 -4.5954 -1.1475 10 1 6.0341 -5.0618 -2.1006 11 6 5.9378 -5.3294 0.0149 12 7 6.0717 -4.7156 1.1703 13 14 5.8895 -7.1955 -0.0512 14 1 7.2690 -7.7209 -0.2138 15 1 5.3052 -7.7206 1.2089 16 1 5.0561 -7.6288 -1.2015 17 6 6.4929 -2.1066 -1.4811 18 6 5.3128 -2.3894 -2.4142 19 6 3.2660 -0.9235 1.0636 20 1 -1.0502 -0.0005 -0.0002 21 1 2.8360 1.8919 -0.6987 22 1 2.6074 -1.7623 -1.3418 23 1 3.7187 -0.4317 -1.8900 24 1 4.8863 -3.0586 0.9926 25 1 3.5178 -3.2890 -0.1220 26 1 6.1459 -5.2320 1.9881 27 1 6.4928 -1.1588 -0.9428 28 1 7.4729 -2.4760 -1.7830 29 1 5.5170 -2.9450 -3.3295 30 1 4.5363 -1.6283 -2.4896 31 1 3.7187 -0.3897 1.8991 32 1 2.6073 -1.7320 1.3805 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934450873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:21 Heat of formation + Delta-G solvation = 87.765422 kcal Electronic energy + Delta-G solvation = -15103.625201 eV Core-core repulsion = 12647.796224 eV Total energy + Delta-G solvation = -2455.828977 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.10525 -36.64298 -34.79576 -32.74343 -32.17011 -28.49095 -26.14114 -25.60897 -23.83325 -21.11407 -20.07825 -19.27246 -18.50464 -16.44869 -16.15982 -15.39189 -15.20949 -14.54248 -14.16652 -13.30761 -13.21355 -12.53271 -12.25623 -11.86948 -11.63454 -11.36163 -11.20871 -10.96733 -10.70588 -10.63265 -10.43230 -10.27960 -9.93345 -9.47243 -9.14880 -9.09078 -8.59978 -8.14889 -7.77004 -6.09447 -4.05415 2.66528 2.67258 3.25657 3.33957 3.39205 4.07446 4.12240 4.37190 4.64192 4.95452 5.01448 5.40729 5.67615 5.71740 5.86051 5.93801 6.01801 6.11273 6.23579 6.47652 6.55621 6.65229 6.86690 7.03296 7.23380 7.47490 7.50077 7.56437 7.65236 7.66056 7.81885 8.02367 8.49985 8.89220 9.50775 10.93858 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037466 B = 0.007854 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.166729 B = 3564.257240 C = 3846.283812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.204 4.204 3 C 0.200 3.800 4 O -0.519 6.519 5 C -0.007 4.007 6 N -0.461 5.461 7 C 0.051 3.949 8 C 0.058 3.942 9 C -0.493 4.493 10 H 0.061 0.939 11 C 0.071 3.929 12 N -0.872 5.872 13 Si 0.887 3.113 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.188 4.188 18 C -0.230 4.230 19 C 0.028 3.972 20 H 0.219 0.781 21 H 0.377 0.623 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.128 0.872 25 H 0.021 0.979 26 H 0.262 0.738 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.042 7.714 -1.417 11.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.205 4.205 3 C 0.158 3.842 4 O -0.323 6.323 5 C -0.136 4.136 6 N -0.183 5.183 7 C -0.076 4.076 8 C 0.057 3.943 9 C -0.531 4.531 10 H 0.079 0.921 11 C -0.132 4.132 12 N -0.509 5.509 13 Si 0.714 3.286 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.226 4.226 18 C -0.267 4.267 19 C -0.101 4.101 20 H 0.236 0.764 21 H 0.224 0.776 22 H 0.093 0.907 23 H 0.116 0.884 24 H 0.145 0.855 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.976 7.673 -0.699 11.090 hybrid contribution -1.329 -1.271 -0.566 1.924 sum -9.306 6.402 -1.265 11.366 Atomic orbital electron populations 1.24992 0.95827 0.99004 1.00699 1.23873 0.94844 1.01355 1.00450 1.19668 0.80458 0.84652 0.99422 1.86637 1.65405 1.21700 1.58579 1.24759 0.94434 0.97649 0.96739 1.68632 1.29452 1.19551 1.00682 1.22477 0.97065 0.83317 1.04725 1.18824 0.94862 0.91665 0.88976 1.20534 1.46818 0.92839 0.92873 0.92095 1.24956 0.94276 0.98581 0.95405 1.69918 1.47261 1.35309 0.98376 0.86682 0.78425 0.85901 0.77615 1.20584 1.21003 1.19772 1.22836 0.93160 1.02002 1.04560 1.23301 1.02542 1.05197 0.95693 1.23994 0.94097 0.95593 0.96372 0.76417 0.77597 0.90712 0.88431 0.85491 0.96112 0.92810 0.90224 0.91523 0.91617 0.90214 0.88540 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 19.25 29.55 0.57 -1.65 16 2 C -0.20 -2.91 12.70 -37.12 -0.47 -3.39 16 3 C 0.20 3.14 1.80 -92.48 -0.17 2.98 16 4 O -0.52 -7.74 13.48 -35.23 -0.47 -8.21 16 5 C -0.01 -0.12 5.12 -2.77 -0.01 -0.13 16 6 N -0.46 -9.36 5.00 -238.35 -1.19 -10.55 16 7 C 0.05 1.21 4.42 -3.82 -0.02 1.20 16 8 C 0.06 1.46 2.36 -155.66 -0.37 1.09 16 9 C -0.49 -13.68 9.01 -34.44 -0.31 -13.99 16 10 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 11 C 0.07 1.93 5.12 -17.82 -0.09 1.84 16 12 N -0.87 -24.24 10.93 55.43 0.61 -23.64 16 13 Si 0.89 20.80 29.58 -169.99 -5.03 15.77 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 17 C -0.19 -4.54 9.62 -26.69 -0.26 -4.80 16 18 C -0.23 -5.19 9.46 -26.69 -0.25 -5.44 16 19 C 0.03 0.50 7.36 -2.76 -0.02 0.48 16 20 H 0.22 1.67 7.80 -54.08 -0.42 1.24 16 21 H 0.38 3.88 9.04 45.56 0.41 4.29 16 22 H 0.07 1.31 7.58 -51.93 -0.39 0.92 16 23 H 0.10 1.63 6.49 -51.93 -0.34 1.29 16 24 H 0.13 3.35 5.67 -51.93 -0.29 3.05 16 25 H 0.02 0.49 7.65 -51.93 -0.40 0.09 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.08 1.90 7.47 -51.93 -0.39 1.51 16 28 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.08 1.61 3.97 -51.93 -0.21 1.41 16 31 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.08 1.33 7.86 -51.93 -0.41 0.92 16 LS Contribution 270.67 15.07 4.08 4.08 Total: -1.00 -29.92 270.67 -6.66 -36.58 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -3.25 Total: 7.80 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -1.40 Total: -21.82 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: -0.58 Total: -34.19 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.47 Total: -8.21 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.92 -6.66 -36.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934450873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.345 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds