Wall clock time and date at job start Sun Mar 29 2020 21:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42902 * 112.93352 * 179.43676 * 3 2 1 5 5 C 1.53927 * 113.73626 * 47.72976 * 3 2 1 6 6 N 1.47963 * 86.18019 * 221.91795 * 5 3 2 7 7 C 1.46907 * 110.99812 * 137.58089 * 6 5 3 8 8 C 1.53005 * 109.46737 * 79.19592 * 7 6 5 9 9 C 1.50703 * 115.54429 * 176.68298 * 8 7 6 10 10 H 1.07998 * 119.99775 * 146.80329 * 9 8 7 11 11 C 1.37874 * 120.00519 * 326.80317 * 9 8 7 12 12 N 1.31516 * 119.99482 * 340.70816 * 11 9 8 13 13 Si 1.86790 * 120.00387 * 160.70516 * 11 9 8 14 14 H 1.48504 * 109.47106 * 90.00080 * 13 11 9 15 15 H 1.48497 * 109.47549 * 210.00120 * 13 11 9 16 16 H 1.48505 * 109.47366 * 330.00330 * 13 11 9 17 17 C 1.52993 * 117.50149 * 31.01755 * 8 7 6 18 18 C 1.52999 * 117.49987 * 322.35193 * 8 7 6 19 19 C 1.47965 * 90.76247 * 24.68951 * 6 5 3 20 20 H 4.45183 * 5.14218 * 179.97438 * 4 1 2 21 21 H 0.96697 * 113.99690 * 309.66215 * 4 3 2 22 22 H 1.09002 * 113.76216 * 336.23611 * 5 3 2 23 23 H 1.09001 * 113.76200 * 107.59987 * 5 3 2 24 24 H 1.08997 * 109.46870 * 199.18974 * 7 6 5 25 25 H 1.08994 * 109.46863 * 319.19793 * 7 6 5 26 26 H 0.97008 * 119.99895 * 180.02562 * 12 11 9 27 27 H 1.08999 * 117.50203 * 359.97438 * 17 8 7 28 28 H 1.08998 * 117.50495 * 145.02070 * 17 8 7 29 29 H 1.08996 * 117.49612 * 214.98199 * 18 8 7 30 30 H 1.08996 * 117.50054 * 359.97438 * 18 8 7 31 31 H 1.08990 * 113.75702 * 220.99177 * 19 6 5 32 32 H 1.08998 * 113.75589 * 89.62277 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2023 1.3169 -0.0129 5 6 3.2661 -0.9468 -1.0427 6 7 4.2322 -1.3181 0.0147 7 6 4.4633 -2.7688 0.0308 8 6 5.4377 -3.1424 -1.0882 9 6 5.8329 -4.5954 -1.1475 10 1 6.0341 -5.0618 -2.1006 11 6 5.9378 -5.3294 0.0149 12 7 6.0717 -4.7156 1.1703 13 14 5.8895 -7.1955 -0.0512 14 1 7.2690 -7.7209 -0.2138 15 1 5.3052 -7.7206 1.2089 16 1 5.0561 -7.6288 -1.2015 17 6 6.4929 -2.1066 -1.4811 18 6 5.3128 -2.3894 -2.4142 19 6 3.2660 -0.9235 1.0636 20 1 -1.0502 -0.0005 -0.0002 21 1 2.8360 1.8919 -0.6987 22 1 2.6074 -1.7623 -1.3418 23 1 3.7187 -0.4317 -1.8900 24 1 4.8863 -3.0586 0.9926 25 1 3.5178 -3.2890 -0.1220 26 1 6.1459 -5.2320 1.9881 27 1 6.4928 -1.1588 -0.9428 28 1 7.4729 -2.4760 -1.7830 29 1 5.5170 -2.9450 -3.3295 30 1 4.5363 -1.6283 -2.4896 31 1 3.7187 -0.3897 1.8991 32 1 2.6073 -1.7320 1.3805 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934450873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:21 Heat of formation + Delta-G solvation = 65.980603 kcal Electronic energy + Delta-G solvation = -15104.569862 eV Core-core repulsion = 12647.796224 eV Total energy + Delta-G solvation = -2456.773638 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52841 -38.32026 -36.21858 -34.24626 -33.75033 -30.04797 -27.88804 -27.28783 -25.39457 -22.94088 -21.54447 -20.86524 -19.94052 -18.20965 -17.54864 -16.84692 -16.68088 -16.27213 -15.84392 -14.95529 -14.74535 -14.03885 -13.93753 -13.49817 -13.23541 -13.10127 -12.84116 -12.69561 -12.35973 -12.24937 -11.80992 -11.69037 -11.57741 -11.09702 -11.07132 -10.67868 -10.54306 -9.93135 -9.55752 -8.14350 -6.18382 1.39345 1.42719 1.53640 1.65001 1.69082 2.40503 2.79616 2.95402 3.08011 3.38689 3.70063 3.72262 4.10034 4.30975 4.38346 4.51816 4.55577 4.63167 4.73652 4.85800 4.91742 5.00596 5.05720 5.17454 5.31771 5.56463 5.66415 5.72872 6.03463 6.10670 6.46228 6.54955 6.72217 6.81637 7.40435 8.87576 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037466 B = 0.007854 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.166729 B = 3564.257240 C = 3846.283812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.261 4.261 3 C 0.223 3.777 4 O -0.531 6.531 5 C -0.007 4.007 6 N -0.478 5.478 7 C 0.069 3.931 8 C 0.026 3.974 9 C -0.523 4.523 10 H 0.051 0.949 11 C 0.029 3.971 12 N -0.895 5.895 13 Si 0.951 3.049 14 H -0.277 1.277 15 H -0.277 1.277 16 H -0.269 1.269 17 C -0.190 4.190 18 C -0.205 4.205 19 C 0.021 3.979 20 H 0.260 0.740 21 H 0.397 0.603 22 H 0.073 0.927 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.010 0.990 26 H 0.264 0.736 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 8.190 -1.912 13.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.262 4.262 3 C 0.181 3.819 4 O -0.339 6.339 5 C -0.136 4.136 6 N -0.201 5.201 7 C -0.059 4.059 8 C 0.025 3.975 9 C -0.560 4.560 10 H 0.069 0.931 11 C -0.172 4.172 12 N -0.532 5.532 13 Si 0.775 3.225 14 H -0.203 1.203 15 H -0.203 1.203 16 H -0.194 1.194 17 C -0.228 4.228 18 C -0.241 4.241 19 C -0.108 4.108 20 H 0.276 0.724 21 H 0.248 0.752 22 H 0.091 0.909 23 H 0.123 0.877 24 H 0.115 0.885 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.836 8.171 -1.211 12.844 hybrid contribution -0.796 -1.337 -0.414 1.611 sum -10.633 6.833 -1.625 12.743 Atomic orbital electron populations 1.25932 0.96546 0.96022 0.97343 1.23678 0.94889 1.04165 1.03423 1.19061 0.81758 0.84346 0.96759 1.86581 1.66021 1.21618 1.59704 1.24748 0.93905 0.98135 0.96773 1.68548 1.31651 1.16845 1.03033 1.22066 0.95816 0.85547 1.02445 1.19000 0.96097 0.91087 0.91294 1.20814 1.47897 0.94548 0.92767 0.93083 1.25664 0.93782 1.02781 0.94988 1.70044 1.47502 1.36810 0.98835 0.85688 0.78412 0.80574 0.77786 1.20275 1.20256 1.19405 1.22734 0.92954 1.01612 1.05500 1.23329 1.01849 1.04577 0.94388 1.24045 0.93851 0.96410 0.96498 0.72399 0.75244 0.90925 0.87708 0.88546 0.97140 0.92640 0.90116 0.92727 0.91482 0.87659 0.88735 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 19.25 74.32 1.43 -1.36 16 2 C -0.26 -6.79 12.70 31.12 0.40 -6.40 16 3 C 0.22 6.71 1.80 -11.96 -0.02 6.69 16 4 O -0.53 -14.99 13.48 -148.98 -2.01 -16.99 16 5 C -0.01 -0.23 5.12 86.40 0.44 0.21 16 6 N -0.48 -19.47 5.00 -911.21 -4.55 -24.03 16 7 C 0.07 3.35 4.42 86.30 0.38 3.73 16 8 C 0.03 1.34 2.36 -52.93 -0.12 1.21 16 9 C -0.52 -29.51 9.01 25.60 0.23 -29.28 16 10 H 0.05 2.88 7.89 -2.91 -0.02 2.86 16 11 C 0.03 1.59 5.12 84.65 0.43 2.03 16 12 N -0.89 -50.74 10.93 21.45 0.23 -50.51 16 13 Si 0.95 43.02 29.58 68.60 2.03 45.05 16 14 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 17 C -0.19 -9.29 9.62 30.62 0.29 -8.99 16 18 C -0.20 -9.09 9.46 30.62 0.29 -8.80 16 19 C 0.02 0.73 7.36 86.40 0.64 1.36 16 20 H 0.26 2.52 7.80 -4.41 -0.03 2.48 16 21 H 0.40 7.31 9.04 -74.06 -0.67 6.64 16 22 H 0.07 2.48 7.58 -2.39 -0.02 2.46 16 23 H 0.11 3.31 6.49 -2.39 -0.02 3.29 16 24 H 0.10 5.27 5.67 -2.39 -0.01 5.25 16 25 H 0.01 0.51 7.65 -2.39 -0.02 0.49 16 26 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 27 H 0.08 3.88 7.47 -2.39 -0.02 3.86 16 28 H 0.05 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.11 4.09 3.97 -2.39 -0.01 4.08 16 31 H 0.09 3.28 8.14 -2.39 -0.02 3.27 16 32 H 0.08 2.75 7.86 -2.39 -0.02 2.73 16 Total: -1.00 -64.51 270.67 0.54 -63.97 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.45 Total: 22.11 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 4.39 Total: -39.60 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -4.32 Total: -74.53 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -2.01 Total: -16.99 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -64.51 0.54 -63.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934450873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.949 kcal (2) G-P(sol) polarization free energy of solvation -64.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds