Wall clock time and date at job start Sun Mar 29 2020 22:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50690 * 109.47319 * 2 1 4 4 N 1.31793 * 119.08318 * 89.99725 * 3 2 1 5 5 C 1.32554 * 121.00960 * 180.02562 * 4 3 2 6 6 C 1.38113 * 119.20036 * 0.02562 * 5 4 3 7 7 C 1.39627 * 118.33326 * 0.02562 * 6 5 4 8 8 N 1.38545 * 120.53282 * 180.02562 * 7 6 5 9 9 C 1.46497 * 119.99819 * 4.99272 * 8 7 6 10 10 C 1.46496 * 120.00202 * 185.00207 * 8 7 6 11 11 C 1.50695 * 109.47431 * 89.99021 * 10 8 7 12 12 H 1.08001 * 120.00307 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00196 * 179.97438 * 11 10 8 14 14 N 1.31514 * 119.99804 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00271 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47357 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47292 * 120.00245 * 15 13 11 18 18 H 1.48506 * 109.47292 * 240.00106 * 15 13 11 19 19 N 1.31749 * 119.08839 * 270.00110 * 3 2 1 20 20 H 1.08997 * 109.46958 * 299.99865 * 1 2 3 21 21 H 1.08998 * 109.47057 * 60.00245 * 1 2 3 22 22 H 1.09004 * 109.46971 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46705 * 239.99692 * 2 1 3 24 24 H 1.09001 * 109.46819 * 120.00224 * 2 1 3 25 25 H 1.08000 * 120.39633 * 179.97438 * 5 4 3 26 26 H 1.07998 * 120.83717 * 180.02562 * 6 5 4 27 27 H 1.08999 * 109.47419 * 90.00649 * 9 8 7 28 28 H 1.09001 * 109.47159 * 210.00845 * 9 8 7 29 29 H 1.09011 * 109.47489 * 330.00346 * 9 8 7 30 30 H 1.08995 * 109.46974 * 209.99635 * 10 8 7 31 31 H 1.09005 * 109.46887 * 329.99205 * 10 8 7 32 32 H 0.97000 * 120.00054 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2459 2.0247 1.1518 5 6 2.6870 3.2739 1.1963 6 6 2.9241 3.9473 0.0140 7 6 2.6866 3.2788 -1.1885 8 7 2.9095 3.9107 -2.4011 9 6 3.5010 5.2507 -2.4309 10 6 2.5536 3.2392 -3.6535 11 6 1.1335 3.5832 -4.0221 12 1 0.5541 4.2370 -3.3872 13 6 0.5742 3.0640 -5.1704 14 7 1.2800 2.2682 -5.9438 15 14 -1.1859 3.4910 -5.6276 16 1 -1.7580 4.3981 -4.6006 17 1 -1.2038 4.1670 -6.9497 18 1 -1.9950 2.2476 -5.6965 19 7 2.2459 2.0246 -1.1513 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.8582 3.7594 2.1457 26 1 3.2841 4.9655 0.0195 27 1 4.5866 5.1676 -2.4823 28 1 3.1360 5.7896 -3.3053 29 1 3.2204 5.7920 -1.5273 30 1 3.2249 3.5692 -4.4462 31 1 2.6448 2.1604 -3.5259 32 1 0.8866 1.9032 -6.7519 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119338044.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:11 Heat of formation + Delta-G solvation = 47.579947 kcal Electronic energy + Delta-G solvation = -14898.955345 eV Core-core repulsion = 12473.676546 eV Total energy + Delta-G solvation = -2425.278799 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.29394 -36.54902 -33.68006 -32.78129 -32.00763 -29.82491 -27.86698 -25.78650 -24.27230 -23.49286 -21.57621 -20.30828 -16.98010 -16.72555 -16.36741 -14.85010 -14.70963 -14.53271 -14.23245 -13.64085 -13.44463 -13.33103 -12.88280 -12.18089 -11.94222 -11.70877 -11.31390 -11.22031 -10.95222 -10.70293 -10.64524 -10.47429 -10.18225 -9.87717 -9.53120 -9.05884 -8.48665 -8.38848 -7.08859 -6.05973 -4.12272 1.66725 2.08711 3.26355 3.34177 3.38164 3.70649 4.39835 4.50821 4.60490 4.92061 5.25686 5.34162 5.53558 5.59172 5.68137 5.71094 5.76505 5.89414 6.09064 6.14516 6.18406 6.21942 6.44330 6.56942 6.78466 7.09597 7.41688 7.60913 7.83042 8.11035 8.19736 8.23715 8.90028 9.04362 9.52245 11.00159 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.009742 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.521657 B = 2873.406099 C = 3602.784074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C 0.355 3.645 4 N -0.583 5.583 5 C 0.168 3.832 6 C -0.321 4.321 7 C 0.449 3.551 8 N -0.579 5.579 9 C 0.095 3.905 10 C 0.249 3.751 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.896 3.104 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.282 1.282 19 N -0.554 5.554 20 H 0.053 0.947 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.153 0.847 26 H 0.133 0.867 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.052 0.948 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 1.381 10.095 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C 0.085 3.915 4 N -0.304 5.304 5 C 0.006 3.994 6 C -0.350 4.350 7 C 0.204 3.796 8 N -0.287 5.287 9 C -0.049 4.049 10 C 0.130 3.870 11 C -0.563 4.563 12 H 0.073 0.927 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.724 3.276 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.208 1.208 19 N -0.277 5.277 20 H 0.072 0.928 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.100 0.900 25 H 0.171 0.829 26 H 0.151 0.849 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.368 0.512 9.657 9.956 hybrid contribution -0.667 1.310 -0.435 1.533 sum 1.701 1.822 9.222 9.553 Atomic orbital electron populations 1.21654 0.94009 1.01786 1.02532 1.20243 0.96545 0.88893 1.03317 1.22810 0.89342 0.96324 0.82990 1.68154 1.20979 1.11227 1.30056 1.22604 0.89776 0.89776 0.97237 1.22068 1.16396 1.03090 0.93486 1.18576 0.86430 0.88117 0.86481 1.47081 1.61031 1.15940 1.04667 1.21642 0.96862 0.83709 1.02665 1.19393 0.95302 0.94387 0.77944 1.21449 0.98022 1.29491 1.07358 0.92668 1.24906 0.97950 0.94926 0.96158 1.69939 1.36760 1.32269 1.14237 0.86480 0.84704 0.78289 0.78172 1.19917 1.20955 1.20804 1.67910 1.20416 1.09370 1.30048 0.92752 0.91842 0.92089 0.89514 0.89972 0.82950 0.84943 0.93643 0.90451 0.92175 0.95219 0.92966 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.90 37.16 0.37 -1.76 16 2 C -0.05 -0.82 6.37 -27.89 -0.18 -0.99 16 3 C 0.36 6.96 6.90 -157.24 -1.08 5.88 16 4 N -0.58 -10.67 10.33 -10.81 -0.11 -10.79 16 5 C 0.17 2.73 11.29 -17.29 -0.20 2.53 16 6 C -0.32 -5.57 9.33 -39.11 -0.36 -5.94 16 7 C 0.45 9.57 7.39 -154.78 -1.14 8.43 16 8 N -0.58 -12.58 2.96 -182.93 -0.54 -13.12 16 9 C 0.10 1.58 10.31 59.85 0.62 2.19 16 10 C 0.25 6.44 5.23 -5.20 -0.03 6.42 16 11 C -0.52 -14.69 9.39 -34.44 -0.32 -15.01 16 12 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 15 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 N -0.55 -12.47 9.13 -9.97 -0.09 -12.56 16 20 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 24 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 26 H 0.13 1.90 6.16 -52.49 -0.32 1.58 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 29 H 0.06 0.85 6.05 -51.92 -0.31 0.53 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.05 1.49 7.33 -51.93 -0.38 1.11 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 276.82 15.07 4.17 4.17 Total: -1.00 -31.61 276.82 -7.65 -39.25 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.36 Total: -1.68 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.43 Total: 3.42 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.01 Total: -61.85 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.61 -7.65 -39.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119338044.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.831 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds