Wall clock time and date at job start Sun Mar 29 2020 22:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50690 * 109.47319 * 2 1 4 4 N 1.31793 * 119.08318 * 89.99725 * 3 2 1 5 5 C 1.32554 * 121.00960 * 180.02562 * 4 3 2 6 6 C 1.38113 * 119.20036 * 0.02562 * 5 4 3 7 7 C 1.39627 * 118.33326 * 0.02562 * 6 5 4 8 8 N 1.38545 * 120.53282 * 180.02562 * 7 6 5 9 9 C 1.46497 * 119.99819 * 4.99272 * 8 7 6 10 10 C 1.46496 * 120.00202 * 185.00207 * 8 7 6 11 11 C 1.50695 * 109.47431 * 89.99021 * 10 8 7 12 12 H 1.08001 * 120.00307 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00196 * 179.97438 * 11 10 8 14 14 N 1.31514 * 119.99804 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00271 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47357 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47292 * 120.00245 * 15 13 11 18 18 H 1.48506 * 109.47292 * 240.00106 * 15 13 11 19 19 N 1.31749 * 119.08839 * 270.00110 * 3 2 1 20 20 H 1.08997 * 109.46958 * 299.99865 * 1 2 3 21 21 H 1.08998 * 109.47057 * 60.00245 * 1 2 3 22 22 H 1.09004 * 109.46971 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46705 * 239.99692 * 2 1 3 24 24 H 1.09001 * 109.46819 * 120.00224 * 2 1 3 25 25 H 1.08000 * 120.39633 * 179.97438 * 5 4 3 26 26 H 1.07998 * 120.83717 * 180.02562 * 6 5 4 27 27 H 1.08999 * 109.47419 * 90.00649 * 9 8 7 28 28 H 1.09001 * 109.47159 * 210.00845 * 9 8 7 29 29 H 1.09011 * 109.47489 * 330.00346 * 9 8 7 30 30 H 1.08995 * 109.46974 * 209.99635 * 10 8 7 31 31 H 1.09005 * 109.46887 * 329.99205 * 10 8 7 32 32 H 0.97000 * 120.00054 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2459 2.0247 1.1518 5 6 2.6870 3.2739 1.1963 6 6 2.9241 3.9473 0.0140 7 6 2.6866 3.2788 -1.1885 8 7 2.9095 3.9107 -2.4011 9 6 3.5010 5.2507 -2.4309 10 6 2.5536 3.2392 -3.6535 11 6 1.1335 3.5832 -4.0221 12 1 0.5541 4.2370 -3.3872 13 6 0.5742 3.0640 -5.1704 14 7 1.2800 2.2682 -5.9438 15 14 -1.1859 3.4910 -5.6276 16 1 -1.7580 4.3981 -4.6006 17 1 -1.2038 4.1670 -6.9497 18 1 -1.9950 2.2476 -5.6965 19 7 2.2459 2.0246 -1.1513 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.8582 3.7594 2.1457 26 1 3.2841 4.9655 0.0195 27 1 4.5866 5.1676 -2.4823 28 1 3.1360 5.7896 -3.3053 29 1 3.2204 5.7920 -1.5273 30 1 3.2249 3.5692 -4.4462 31 1 2.6448 2.1604 -3.5259 32 1 0.8866 1.9032 -6.7519 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119338044.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:11 Heat of formation + Delta-G solvation = 28.260962 kcal Electronic energy + Delta-G solvation = -14899.793079 eV Core-core repulsion = 12473.676546 eV Total energy + Delta-G solvation = -2426.116533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.74716 -38.13756 -35.15294 -34.69893 -33.54012 -31.32050 -29.63331 -27.38241 -25.68105 -25.23552 -23.12480 -21.80861 -18.76494 -18.34369 -18.11747 -16.60978 -16.19787 -16.08584 -15.70047 -15.13990 -14.94953 -14.71552 -14.31875 -13.98510 -13.32719 -13.24711 -13.12143 -12.79471 -12.62021 -12.47954 -12.19323 -12.08430 -11.93708 -11.48336 -11.31047 -10.64241 -10.53145 -9.90513 -8.74084 -8.16052 -6.36062 0.27148 0.62452 1.34169 1.35934 1.47397 2.17367 2.38793 3.07052 3.07697 3.25870 3.56793 3.97389 4.27203 4.33215 4.37013 4.44679 4.49727 4.64651 4.76692 4.85081 4.92992 4.99873 5.02291 5.14820 5.23987 5.32310 5.60313 5.69867 5.97070 6.08658 6.41487 6.69862 6.77111 7.32673 7.57424 8.84584 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.009742 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.521657 B = 2873.406099 C = 3602.784074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 C 0.339 3.661 4 N -0.584 5.584 5 C 0.171 3.829 6 C -0.312 4.312 7 C 0.418 3.582 8 N -0.596 5.596 9 C 0.093 3.907 10 C 0.269 3.731 11 C -0.535 4.535 12 H 0.044 0.956 13 C 0.013 3.987 14 N -0.925 5.925 15 Si 0.962 3.038 16 H -0.272 1.272 17 H -0.271 1.271 18 H -0.279 1.279 19 N -0.601 5.601 20 H 0.058 0.942 21 H 0.029 0.971 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.203 0.797 26 H 0.167 0.833 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 2.350 11.936 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 C 0.070 3.930 4 N -0.305 5.305 5 C 0.009 3.991 6 C -0.341 4.341 7 C 0.175 3.825 8 N -0.306 5.306 9 C -0.049 4.049 10 C 0.148 3.852 11 C -0.574 4.574 12 H 0.063 0.937 13 C -0.187 4.187 14 N -0.565 5.565 15 Si 0.787 3.213 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.204 1.204 19 N -0.326 5.326 20 H 0.077 0.923 21 H 0.048 0.952 22 H 0.109 0.891 23 H 0.095 0.905 24 H 0.126 0.874 25 H 0.220 0.780 26 H 0.184 0.816 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.951 1.497 11.534 11.793 hybrid contribution -0.480 0.993 -0.904 1.426 sum 1.471 2.490 10.630 11.017 Atomic orbital electron populations 1.21594 0.93246 1.03284 1.00994 1.20370 0.97110 0.87503 1.04066 1.23368 0.89338 0.97528 0.82770 1.68263 1.20805 1.12309 1.29126 1.23441 0.87796 0.88966 0.98865 1.22387 1.15299 1.04366 0.92032 1.19061 0.87467 0.88471 0.87493 1.46996 1.62468 1.17579 1.03527 1.21851 0.97782 0.81517 1.03786 1.18777 0.94146 0.92592 0.79722 1.21637 0.99033 1.29318 1.07380 0.93731 1.25746 1.02114 0.94713 0.96083 1.70046 1.38598 1.33111 1.14712 0.85455 0.79533 0.78101 0.78227 1.19691 1.19585 1.20445 1.67878 1.21945 1.10813 1.31985 0.92292 0.95165 0.89107 0.90489 0.87370 0.78009 0.81586 0.91646 0.91274 0.89205 0.96774 0.96713 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 9.90 71.98 0.71 -3.20 16 2 C -0.05 -1.63 6.37 29.85 0.19 -1.44 16 3 C 0.34 13.19 6.90 138.76 0.96 14.15 16 4 N -0.58 -20.17 10.33 -188.12 -1.94 -22.12 16 5 C 0.17 4.97 11.29 84.55 0.95 5.93 16 6 C -0.31 -10.04 9.33 22.58 0.21 -9.82 16 7 C 0.42 17.77 7.39 133.16 0.98 18.75 16 8 N -0.60 -26.16 2.96 -732.66 -2.17 -28.32 16 9 C 0.09 2.96 10.31 127.77 1.32 4.28 16 10 C 0.27 14.52 5.23 85.63 0.45 14.96 16 11 C -0.53 -30.78 9.39 25.60 0.24 -30.54 16 12 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 13 C 0.01 0.72 5.46 84.65 0.46 1.19 16 14 N -0.92 -55.40 13.29 21.45 0.28 -55.12 16 15 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 16 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 N -0.60 -27.66 9.13 -185.45 -1.69 -29.35 16 20 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 25 H 0.20 3.77 8.06 -2.91 -0.02 3.75 16 26 H 0.17 4.07 6.16 -2.91 -0.02 4.05 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 29 H 0.09 2.28 6.05 -2.38 -0.01 2.27 16 30 H 0.01 0.79 8.07 -2.39 -0.02 0.77 16 31 H 0.01 0.89 7.33 -2.38 -0.02 0.88 16 32 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -70.40 276.82 4.08 -66.32 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 1.10 Total: 7.35 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 6.48 Total: 14.25 kcal Atomic # 7 Polarization: -129.39 SS G_CDS: -5.52 Total: -134.91 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -70.40 4.08 -66.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119338044.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.576 kcal (2) G-P(sol) polarization free energy of solvation -70.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds