Wall clock time and date at job start Sun Mar 29 2020 21:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47236 * 279.24590 * 3 2 1 5 5 C 1.36935 * 119.99723 * 265.08076 * 4 3 2 6 6 H 1.07997 * 119.99801 * 139.73829 * 5 4 3 7 7 C 1.38801 * 119.99946 * 319.72975 * 5 4 3 8 8 N 1.31561 * 120.00049 * 344.51091 * 7 5 4 9 9 Si 1.86802 * 119.99826 * 164.50631 * 7 5 4 10 10 H 1.48497 * 109.47125 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47087 * 120.00324 * 9 7 5 12 12 H 1.48507 * 109.47125 * 240.00450 * 9 7 5 13 13 C 1.38221 * 120.00041 * 85.07908 * 4 3 2 14 14 N 1.31564 * 126.45853 * 353.73759 * 13 4 3 15 15 N 1.28420 * 110.49932 * 180.02562 * 14 13 4 16 16 N 1.28905 * 110.35111 * 359.97438 * 15 14 13 17 17 N 1.35433 * 126.45631 * 173.43247 * 13 4 3 18 18 C 1.46504 * 127.38845 * 359.96633 * 17 13 4 19 19 C 1.52999 * 109.47532 * 91.74541 * 18 17 13 20 20 H 4.40638 * 5.51367 * 179.97438 * 4 1 2 21 21 H 1.09000 * 109.47492 * 39.24449 * 3 2 1 22 22 H 1.09002 * 109.47183 * 159.24608 * 3 2 1 23 23 H 0.97005 * 119.99980 * 179.97438 * 8 7 5 24 24 H 1.09007 * 109.46915 * 211.74314 * 18 17 13 25 25 H 1.08999 * 109.46957 * 331.73663 * 18 17 13 26 26 H 1.08996 * 109.46968 * 180.02562 * 19 18 17 27 27 H 1.08997 * 109.46843 * 299.99708 * 19 18 17 28 28 H 1.08993 * 109.46913 * 59.99897 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2210 1.3633 5 6 3.4580 0.8470 2.1567 6 1 3.1952 0.8408 3.2042 7 6 4.1239 1.9376 1.6148 8 7 4.7110 1.8336 0.4420 9 14 4.1865 3.5532 2.5505 10 1 3.4550 3.4099 3.8349 11 1 5.6012 3.9121 2.8244 12 1 3.5533 4.6217 1.7364 13 6 3.2686 -1.5083 1.8486 14 7 2.8900 -2.6146 1.2455 15 7 3.1610 -3.6382 1.9721 16 7 3.7227 -3.2708 3.0726 17 7 3.8197 -1.8688 3.0320 18 6 4.3918 -0.9868 4.0523 19 6 3.3093 -0.6098 5.0658 20 1 -1.0499 0.0002 0.0001 21 1 3.0097 -0.7950 -0.6501 22 1 3.0089 0.9618 -0.3642 23 1 5.1761 2.5959 0.0631 24 1 5.2047 -1.5024 4.5639 25 1 4.7760 -0.0838 3.5780 26 1 3.7350 0.0468 5.8246 27 1 2.4966 -0.0942 4.5542 28 1 2.9253 -1.5129 5.5400 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119646482.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:17 Heat of formation + Delta-G solvation = 184.780540 kcal Electronic energy + Delta-G solvation = -15123.740177 eV Core-core repulsion = 12600.870499 eV Total energy + Delta-G solvation = -2522.869678 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.52281 -37.03598 -34.66897 -32.67064 -31.98457 -30.10630 -29.59198 -26.87592 -24.80228 -23.51651 -21.33176 -20.59050 -18.15706 -17.47868 -16.21779 -15.68871 -15.32013 -14.80760 -14.03977 -13.82413 -13.56783 -12.69069 -12.35312 -12.08253 -11.92318 -11.79148 -11.46425 -11.21686 -11.04281 -10.68619 -10.49745 -10.02011 -9.75356 -9.62314 -9.43385 -9.25592 -9.01710 -7.39393 -6.70443 -4.43442 2.38629 2.80263 2.93832 3.03901 3.06476 3.50331 3.62643 3.68622 3.85171 4.58637 4.70552 5.21987 5.26689 5.54503 5.74259 5.83901 6.02954 6.17305 6.30723 6.47962 6.64685 6.74155 6.81093 6.82755 7.06882 7.30442 7.77978 8.19769 8.35989 8.81325 9.12798 9.88928 10.30245 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.013815 C = 0.010185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.506833 B = 2026.320626 C = 2748.508532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.161 4.161 3 C 0.235 3.765 4 N -0.404 5.404 5 C -0.341 4.341 6 H 0.101 0.899 7 C 0.045 3.955 8 N -0.856 5.856 9 Si 0.923 3.077 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.274 1.274 13 C 0.485 3.515 14 N -0.414 5.414 15 N -0.040 5.040 16 N -0.150 5.150 17 N -0.422 5.422 18 C 0.126 3.874 19 C -0.168 4.168 20 H 0.208 0.792 21 H 0.084 0.916 22 H 0.134 0.866 23 H 0.277 0.723 24 H 0.080 0.920 25 H 0.125 0.875 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 2.976 3.664 4.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.162 4.162 3 C 0.112 3.888 4 N -0.110 5.110 5 C -0.469 4.469 6 H 0.118 0.882 7 C -0.164 4.164 8 N -0.491 5.491 9 Si 0.749 3.251 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.200 1.200 13 C 0.124 3.876 14 N -0.283 5.283 15 N -0.036 5.036 16 N -0.140 5.140 17 N -0.227 5.227 18 C 0.003 3.997 19 C -0.227 4.227 20 H 0.225 0.775 21 H 0.102 0.898 22 H 0.152 0.848 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.143 0.857 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.128 1.918 3.388 4.054 hybrid contribution 0.029 1.810 0.729 1.952 sum -1.099 3.728 4.117 5.662 Atomic orbital electron populations 1.24624 0.95656 1.04614 1.01327 1.24289 0.95443 0.97426 0.99085 1.18559 0.81678 1.05307 0.83283 1.41269 1.59427 0.97172 1.13154 1.19735 1.37554 0.94316 0.95292 0.88209 1.25541 0.93508 1.00448 0.96864 1.69890 1.29931 1.31841 1.17428 0.85903 0.78482 0.80936 0.79825 1.18827 1.20155 1.19966 1.22185 0.90839 0.90024 0.84511 1.74659 1.33538 0.93453 1.26699 1.77503 1.06717 1.21523 0.97844 1.82128 1.26068 0.87431 1.18339 1.50691 1.49752 1.05597 1.16638 1.21990 0.95550 0.94056 0.88085 1.22262 0.99828 1.01614 0.98982 0.77538 0.89784 0.84840 0.91303 0.90130 0.85726 0.91053 0.91560 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.60 19.25 29.55 0.57 -4.03 15 2 C -0.16 -3.44 13.64 -37.13 -0.51 -3.95 15 3 C 0.23 5.29 5.49 -6.83 -0.04 5.25 15 4 N -0.40 -9.58 2.56 -119.72 -0.31 -9.89 15 5 C -0.34 -7.80 6.90 -15.06 -0.10 -7.90 15 6 H 0.10 2.17 4.20 -52.49 -0.22 1.95 15 7 C 0.04 1.00 5.03 -17.46 -0.09 0.91 15 8 N -0.86 -20.17 11.37 55.49 0.63 -19.54 15 9 Si 0.92 17.42 29.58 -169.99 -5.03 12.39 15 10 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 11 H -0.28 -5.19 7.11 56.52 0.40 -4.79 15 12 H -0.27 -5.26 7.11 56.52 0.40 -4.85 15 13 C 0.48 11.77 8.33 -320.37 -2.67 9.10 15 14 N -0.41 -10.40 11.71 30.10 0.35 -10.04 15 15 N -0.04 -0.97 13.38 60.35 0.81 -0.17 15 16 N -0.15 -3.50 13.93 60.35 0.84 -2.66 15 17 N -0.42 -9.44 3.69 -61.85 -0.23 -9.67 15 18 C 0.13 2.29 6.35 -4.04 -0.03 2.26 15 19 C -0.17 -2.67 9.66 37.16 0.36 -2.31 15 20 H 0.21 2.99 7.80 -54.09 -0.42 2.56 15 21 H 0.08 1.88 7.90 -51.93 -0.41 1.47 15 22 H 0.13 3.08 5.56 -51.93 -0.29 2.79 15 23 H 0.28 6.11 8.31 -40.82 -0.34 5.77 15 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.13 2.38 5.53 -51.93 -0.29 2.09 15 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 27 H 0.07 1.17 6.59 -51.93 -0.34 0.83 15 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 LS Contribution 252.50 15.07 3.81 3.81 Total: -1.00 -27.26 252.50 -4.00 -31.26 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -2.37 Total: 5.18 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.50 Total: -0.67 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 2.10 Total: -51.97 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.26 -4.00 -31.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119646482.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.038 kcal (2) G-P(sol) polarization free energy of solvation -27.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds