Wall clock time and date at job start Sun Mar 29 2020 21:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47236 * 279.24590 * 3 2 1 5 5 C 1.36935 * 119.99723 * 265.08076 * 4 3 2 6 6 H 1.07997 * 119.99801 * 139.73829 * 5 4 3 7 7 C 1.38801 * 119.99946 * 319.72975 * 5 4 3 8 8 N 1.31561 * 120.00049 * 344.51091 * 7 5 4 9 9 Si 1.86802 * 119.99826 * 164.50631 * 7 5 4 10 10 H 1.48497 * 109.47125 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47087 * 120.00324 * 9 7 5 12 12 H 1.48507 * 109.47125 * 240.00450 * 9 7 5 13 13 C 1.38221 * 120.00041 * 85.07908 * 4 3 2 14 14 N 1.31564 * 126.45853 * 353.73759 * 13 4 3 15 15 N 1.28420 * 110.49932 * 180.02562 * 14 13 4 16 16 N 1.28905 * 110.35111 * 359.97438 * 15 14 13 17 17 N 1.35433 * 126.45631 * 173.43247 * 13 4 3 18 18 C 1.46504 * 127.38845 * 359.96633 * 17 13 4 19 19 C 1.52999 * 109.47532 * 91.74541 * 18 17 13 20 20 H 4.40638 * 5.51367 * 179.97438 * 4 1 2 21 21 H 1.09000 * 109.47492 * 39.24449 * 3 2 1 22 22 H 1.09002 * 109.47183 * 159.24608 * 3 2 1 23 23 H 0.97005 * 119.99980 * 179.97438 * 8 7 5 24 24 H 1.09007 * 109.46915 * 211.74314 * 18 17 13 25 25 H 1.08999 * 109.46957 * 331.73663 * 18 17 13 26 26 H 1.08996 * 109.46968 * 180.02562 * 19 18 17 27 27 H 1.08997 * 109.46843 * 299.99708 * 19 18 17 28 28 H 1.08993 * 109.46913 * 59.99897 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2210 1.3633 5 6 3.4580 0.8470 2.1567 6 1 3.1952 0.8408 3.2042 7 6 4.1239 1.9376 1.6148 8 7 4.7110 1.8336 0.4420 9 14 4.1865 3.5532 2.5505 10 1 3.4550 3.4099 3.8349 11 1 5.6012 3.9121 2.8244 12 1 3.5533 4.6217 1.7364 13 6 3.2686 -1.5083 1.8486 14 7 2.8900 -2.6146 1.2455 15 7 3.1610 -3.6382 1.9721 16 7 3.7227 -3.2708 3.0726 17 7 3.8197 -1.8688 3.0320 18 6 4.3918 -0.9868 4.0523 19 6 3.3093 -0.6098 5.0658 20 1 -1.0499 0.0002 0.0001 21 1 3.0097 -0.7950 -0.6501 22 1 3.0089 0.9618 -0.3642 23 1 5.1761 2.5959 0.0631 24 1 5.2047 -1.5024 4.5639 25 1 4.7760 -0.0838 3.5780 26 1 3.7350 0.0468 5.8246 27 1 2.4966 -0.0942 4.5542 28 1 2.9253 -1.5129 5.5400 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119646482.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:17 Heat of formation + Delta-G solvation = 170.396856 kcal Electronic energy + Delta-G solvation = -15124.363900 eV Core-core repulsion = 12600.870499 eV Total energy + Delta-G solvation = -2523.493401 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.33940 -38.78428 -36.27344 -34.37038 -33.65181 -31.77715 -31.30125 -28.58836 -26.50071 -25.15753 -23.01551 -22.34782 -19.84289 -19.11467 -17.87885 -17.42940 -17.04354 -16.53526 -15.63045 -15.33473 -15.19517 -14.21293 -14.04451 -13.78141 -13.54626 -13.32473 -13.07467 -12.80961 -12.64720 -12.14384 -11.99534 -11.70892 -11.48425 -11.32429 -11.10899 -10.98213 -10.71502 -9.18273 -8.42016 -6.20840 0.56959 1.12445 1.43910 1.50596 1.61573 1.81022 1.93291 2.03979 2.26770 2.88251 3.01262 3.70572 3.75508 4.15645 4.18052 4.44394 4.51325 4.61048 4.80959 4.90301 5.03531 5.11137 5.16836 5.22772 5.39667 5.61948 6.04936 6.44126 6.79457 7.06171 7.36448 8.05076 8.60144 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.013815 C = 0.010185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.506833 B = 2026.320626 C = 2748.508532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.221 4.221 3 C 0.241 3.759 4 N -0.408 5.408 5 C -0.354 4.354 6 H 0.111 0.889 7 C 0.011 3.989 8 N -0.886 5.886 9 Si 0.987 3.013 10 H -0.252 1.252 11 H -0.273 1.273 12 H -0.278 1.278 13 C 0.466 3.534 14 N -0.434 5.434 15 N -0.054 5.054 16 N -0.148 5.148 17 N -0.419 5.419 18 C 0.116 3.884 19 C -0.158 4.158 20 H 0.252 0.748 21 H 0.071 0.929 22 H 0.123 0.877 23 H 0.280 0.720 24 H 0.105 0.895 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.045 0.955 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 4.119 5.137 6.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.223 4.223 3 C 0.118 3.882 4 N -0.115 5.115 5 C -0.482 4.482 6 H 0.128 0.872 7 C -0.195 4.195 8 N -0.521 5.521 9 Si 0.809 3.191 10 H -0.175 1.175 11 H -0.198 1.198 12 H -0.204 1.204 13 C 0.105 3.895 14 N -0.305 5.305 15 N -0.050 5.050 16 N -0.138 5.138 17 N -0.225 5.225 18 C -0.005 4.005 19 C -0.216 4.216 20 H 0.268 0.732 21 H 0.089 0.911 22 H 0.141 0.859 23 H 0.089 0.911 24 H 0.123 0.877 25 H 0.134 0.866 26 H 0.127 0.873 27 H 0.065 0.935 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.759 3.055 4.872 6.014 hybrid contribution 0.211 1.455 0.260 1.493 sum -1.548 4.510 5.132 7.005 Atomic orbital electron populations 1.25613 0.96505 1.01535 0.98356 1.24312 0.95868 1.00233 1.01851 1.18327 0.83020 1.04138 0.82744 1.41551 1.59287 0.97152 1.13477 1.20105 1.37933 0.94219 0.95906 0.87176 1.26330 0.92697 1.03013 0.97436 1.69983 1.30519 1.32818 1.18782 0.84952 0.78501 0.76692 0.78966 1.17494 1.19834 1.20401 1.22358 0.91576 0.90169 0.85370 1.74566 1.34406 0.93962 1.27531 1.77459 1.07580 1.21741 0.98257 1.82009 1.25521 0.88265 1.17968 1.50970 1.49211 1.05419 1.16900 1.22323 0.97031 0.93369 0.87762 1.22192 0.98496 1.02121 0.98813 0.73177 0.91088 0.85929 0.91053 0.87664 0.86617 0.87330 0.93548 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.18 19.25 74.32 1.43 -5.75 15 2 C -0.22 -9.42 13.64 31.12 0.42 -8.99 15 3 C 0.24 11.11 5.49 84.57 0.46 11.58 15 4 N -0.41 -19.55 2.56 -532.69 -1.36 -20.92 15 5 C -0.35 -16.04 6.90 84.03 0.58 -15.46 15 6 H 0.11 4.66 4.20 -2.91 -0.01 4.65 15 7 C 0.01 0.48 5.03 84.87 0.43 0.90 15 8 N -0.89 -41.96 11.37 21.65 0.25 -41.71 15 9 Si 0.99 34.51 29.58 68.60 2.03 36.54 15 10 H -0.25 -8.23 7.11 99.48 0.71 -7.52 15 11 H -0.27 -9.38 7.11 99.48 0.71 -8.67 15 12 H -0.28 -9.89 7.11 99.48 0.71 -9.19 15 13 C 0.47 22.78 8.33 260.63 2.17 24.95 15 14 N -0.43 -22.12 11.71 -58.67 -0.69 -22.81 15 15 N -0.05 -2.68 13.38 37.02 0.50 -2.18 15 16 N -0.15 -6.83 13.93 37.02 0.52 -6.31 15 17 N -0.42 -18.54 3.69 -349.58 -1.29 -19.83 15 18 C 0.12 4.02 6.35 86.38 0.55 4.57 15 19 C -0.16 -4.63 9.66 71.98 0.70 -3.93 15 20 H 0.25 6.17 7.80 -4.42 -0.03 6.13 15 21 H 0.07 3.34 7.90 -2.39 -0.02 3.32 15 22 H 0.12 5.85 5.56 -2.39 -0.01 5.84 15 23 H 0.28 12.39 8.31 -92.70 -0.77 11.62 15 24 H 0.11 3.10 8.14 -2.38 -0.02 3.08 15 25 H 0.12 4.26 5.53 -2.39 -0.01 4.25 15 26 H 0.11 2.36 8.14 -2.39 -0.02 2.34 15 27 H 0.05 1.55 6.59 -2.39 -0.02 1.53 15 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 15 Total: -1.00 -58.20 252.50 7.87 -50.33 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 1.18 Total: 19.01 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 6.74 Total: 7.88 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -2.09 Total: -113.76 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 2.03 Total: 36.54 kcal Total: -58.20 7.87 -50.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119646482.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.725 kcal (2) G-P(sol) polarization free energy of solvation -58.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds