Wall clock time and date at job start Sun Mar 29 2020 22:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46820 * 2 1 4 4 C 1.46901 * 110.99935 * 288.04958 * 3 2 1 5 5 C 1.50699 * 109.46955 * 160.35980 * 4 3 2 6 6 H 1.08001 * 120.00079 * 4.65991 * 5 4 3 7 7 C 1.37878 * 119.99922 * 184.65696 * 5 4 3 8 8 N 1.31513 * 120.00095 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00065 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46981 * 59.99909 * 9 7 5 11 11 H 1.48498 * 109.47155 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47091 * 300.00418 * 9 7 5 13 13 C 1.46901 * 110.99795 * 164.09736 * 3 2 1 14 14 C 1.50704 * 109.47265 * 293.95247 * 13 3 2 15 15 C 1.38613 * 120.07405 * 95.26006 * 14 13 3 16 16 C 1.38882 * 117.96048 * 180.29023 * 15 14 13 17 17 C 1.38606 * 117.97501 * 359.46038 * 16 15 14 18 18 N 1.31931 * 119.84333 * 0.28483 * 17 16 15 19 19 N 1.28349 * 122.18874 * 359.97438 * 18 17 16 20 20 H 1.08996 * 109.47480 * 299.44168 * 1 2 3 21 21 H 1.09001 * 109.47227 * 59.45099 * 1 2 3 22 22 H 1.09009 * 109.46743 * 179.44660 * 1 2 3 23 23 H 1.08998 * 109.47212 * 240.00119 * 2 1 3 24 24 H 1.08998 * 109.47480 * 119.99806 * 2 1 3 25 25 H 1.09000 * 109.47303 * 280.35852 * 4 3 2 26 26 H 1.08997 * 109.47363 * 40.36189 * 4 3 2 27 27 H 0.96999 * 119.99998 * 179.97438 * 8 7 5 28 28 H 1.09008 * 109.46942 * 173.95163 * 13 3 2 29 29 H 1.09000 * 109.47336 * 53.95844 * 13 3 2 30 30 H 1.07992 * 121.01924 * 0.02645 * 15 14 13 31 31 H 1.08003 * 121.00965 * 179.74234 * 16 15 14 32 32 H 1.08001 * 120.07938 * 180.29444 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7944 2.0230 -1.3040 5 6 1.8458 3.5208 -1.1459 6 1 2.1017 3.9545 -0.1905 7 6 1.5660 4.3374 -2.2210 8 7 1.2539 3.8093 -3.3843 9 14 1.6304 6.1941 -2.0253 10 1 2.9973 6.6011 -1.6117 11 1 1.2922 6.8402 -3.3189 12 1 0.6535 6.6168 -0.9898 13 6 3.4386 1.4417 0.3758 14 6 3.5964 1.0057 1.8097 15 6 3.9180 -0.3100 2.1043 16 6 4.0466 -0.6654 3.4407 17 6 3.8567 0.3201 4.3967 18 7 3.5579 1.5493 4.0221 19 7 3.4339 1.8767 2.7873 20 1 -0.3634 0.5051 0.8949 21 1 -0.3634 0.5223 -0.8850 22 1 -0.3633 -1.0277 -0.0099 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.5681 1.7046 -2.0027 26 1 0.8165 1.7314 -1.6871 27 1 1.0567 4.3838 -4.1405 28 1 3.8035 2.4629 0.2642 29 1 4.0126 0.7782 -0.2710 30 1 4.0599 -1.0374 1.3188 31 1 4.2918 -1.6777 3.7261 32 1 3.9532 0.0823 5.4458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139971183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:30 Heat of formation + Delta-G solvation = 60.247692 kcal Electronic energy + Delta-G solvation = -14794.302388 eV Core-core repulsion = 12369.572904 eV Total energy + Delta-G solvation = -2424.729484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.81462 -37.11214 -33.16607 -32.83232 -32.40480 -30.07962 -27.47840 -25.35271 -24.45729 -22.58514 -22.47964 -19.86000 -17.20744 -16.80316 -16.42247 -15.65656 -15.16927 -14.51108 -14.07920 -13.88976 -13.57696 -13.20162 -13.06567 -12.20624 -11.81544 -11.46561 -11.30159 -11.03504 -10.82421 -10.64863 -10.57206 -10.27382 -10.09223 -9.74826 -9.58170 -9.40861 -9.18120 -8.37901 -7.32985 -5.98713 -3.99258 0.93853 1.09305 3.39950 3.42566 3.48021 3.73052 4.24675 4.47928 4.60730 4.69028 4.77469 4.98628 5.06429 5.37390 5.40736 5.59307 5.69278 5.81704 5.92130 6.01864 6.18747 6.24320 6.31037 6.48072 6.54553 6.78044 7.18069 7.28277 7.85354 8.07834 8.15208 8.53340 8.98599 9.09538 9.65090 11.11873 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.007682 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.602160 B = 3643.965342 C = 4201.253172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.526 5.526 4 C 0.193 3.807 5 C -0.505 4.505 6 H 0.067 0.933 7 C 0.055 3.945 8 N -0.902 5.902 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.110 3.890 14 C 0.096 3.904 15 C -0.119 4.119 16 C -0.124 4.124 17 C 0.022 3.978 18 N -0.246 5.246 19 N -0.219 5.219 20 H 0.056 0.944 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.025 0.975 24 H 0.053 0.947 25 H -0.009 1.009 26 H 0.041 0.959 27 H 0.261 0.739 28 H 0.106 0.894 29 H 0.042 0.958 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.916 -11.190 9.732 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 N -0.251 5.251 4 C 0.068 3.932 5 C -0.544 4.544 6 H 0.085 0.915 7 C -0.145 4.145 8 N -0.542 5.542 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.201 1.201 13 C -0.020 4.020 14 C -0.049 4.049 15 C -0.149 4.149 16 C -0.153 4.153 17 C -0.142 4.142 18 N -0.086 5.086 19 N -0.062 5.062 20 H 0.075 0.925 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.124 0.876 29 H 0.060 0.940 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.246 -9.292 10.339 14.535 hybrid contribution 0.762 -1.128 -0.971 1.672 sum 5.008 -10.421 9.368 14.880 Atomic orbital electron populations 1.21731 0.95258 0.99960 1.03097 1.22093 0.96432 0.90947 0.98784 1.62146 1.13716 1.14211 1.35028 1.19821 0.96693 0.94424 0.82213 1.21186 1.46097 0.90506 0.96582 0.91532 1.24969 0.95416 0.98998 0.95163 1.69944 1.47801 1.35368 1.01090 0.86559 0.78683 0.85144 0.77050 1.20221 1.21488 1.20107 1.20878 0.91638 1.03211 0.86251 1.23136 0.92290 0.90717 0.98790 1.22367 0.97583 0.97353 0.97581 1.22331 0.98282 1.01249 0.93485 1.24244 0.97198 0.91240 1.01550 1.73105 1.08005 1.17091 1.10448 1.73090 1.08380 1.30233 0.94462 0.92496 0.91729 0.93620 0.95682 0.92849 0.99131 0.94147 0.92936 0.87591 0.93982 0.83740 0.83757 0.81692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.98 37.16 0.37 -2.10 16 2 C 0.05 0.82 5.53 -3.82 -0.02 0.80 16 3 N -0.53 -11.28 4.37 -237.51 -1.04 -12.32 16 4 C 0.19 4.93 4.59 -4.98 -0.02 4.91 16 5 C -0.51 -14.28 8.61 -34.44 -0.30 -14.58 16 6 H 0.07 1.91 7.66 -52.49 -0.40 1.51 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.11 2.10 5.14 -4.97 -0.03 2.07 16 14 C 0.10 1.64 5.76 -82.41 -0.47 1.16 16 15 C -0.12 -1.53 8.19 -39.20 -0.32 -1.85 16 16 C -0.12 -1.32 10.21 -39.21 -0.40 -1.72 16 17 C 0.02 0.27 11.31 -17.37 -0.20 0.08 16 18 N -0.25 -4.17 11.50 30.55 0.35 -3.82 16 19 N -0.22 -4.21 11.43 33.60 0.38 -3.83 16 20 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 21 H 0.06 1.24 6.52 -51.93 -0.34 0.90 16 22 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 23 H 0.02 0.43 8.05 -51.93 -0.42 0.02 16 24 H 0.05 0.84 5.59 -51.93 -0.29 0.55 16 25 H -0.01 -0.24 8.00 -51.93 -0.42 -0.66 16 26 H 0.04 1.10 6.24 -51.93 -0.32 0.78 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.11 2.25 7.32 -51.92 -0.38 1.87 16 29 H 0.04 0.72 8.03 -51.93 -0.42 0.30 16 30 H 0.14 1.48 8.03 -52.49 -0.42 1.06 16 31 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 272.38 15.07 4.10 4.10 Total: -1.00 -31.98 272.38 -6.20 -38.18 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -4.23 Total: -3.66 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -1.49 Total: -9.75 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.43 Total: -45.97 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.98 -6.20 -38.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139971183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.430 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds