Wall clock time and date at job start Sun Mar 29 2020 22:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.46967 * 2 1 4 4 C 1.46901 * 110.99631 * 296.56661 * 3 2 1 5 5 C 1.50697 * 109.47241 * 288.52689 * 4 3 2 6 6 H 1.07998 * 120.00277 * 0.83433 * 5 4 3 7 7 C 1.37879 * 119.99822 * 180.82873 * 5 4 3 8 8 N 1.31515 * 120.00103 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99863 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47106 * 90.00096 * 9 7 5 11 11 H 1.48507 * 109.46836 * 209.99711 * 9 7 5 12 12 H 1.48497 * 109.47294 * 329.99519 * 9 7 5 13 13 C 1.46900 * 111.00238 * 60.52387 * 3 2 1 14 14 C 1.50703 * 109.46912 * 66.04468 * 13 3 2 15 15 C 1.38617 * 120.44421 * 95.00382 * 14 13 3 16 16 C 1.38582 * 118.39551 * 179.69795 * 15 14 13 17 17 N 1.32345 * 119.10777 * 0.27626 * 16 15 14 18 18 C 1.31784 * 120.81454 * 359.97438 * 17 16 15 19 19 N 1.31803 * 121.75924 * 0.02562 * 18 17 16 20 20 H 1.08999 * 109.47334 * 299.19657 * 1 2 3 21 21 H 1.09000 * 109.46927 * 59.19616 * 1 2 3 22 22 H 1.09006 * 109.46910 * 179.19604 * 1 2 3 23 23 H 1.08991 * 109.47247 * 239.99512 * 2 1 3 24 24 H 1.08999 * 109.46460 * 119.99772 * 2 1 3 25 25 H 1.08999 * 109.47003 * 48.53176 * 4 3 2 26 26 H 1.09000 * 109.46926 * 168.52689 * 4 3 2 27 27 H 0.97000 * 120.00333 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.46828 * 306.04615 * 13 3 2 29 29 H 1.08995 * 109.46773 * 186.04747 * 13 3 2 30 30 H 1.07993 * 120.80560 * 359.96883 * 15 14 13 31 31 H 1.07998 * 120.44824 * 180.29448 * 16 15 14 32 32 H 1.08004 * 119.11726 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6168 2.0857 -1.2267 5 6 2.4064 1.5505 -2.3933 6 1 3.1250 0.7587 -2.2413 7 6 2.2113 2.0715 -3.6549 8 7 2.8999 1.6041 -4.6731 9 14 0.9688 3.4414 -3.9177 10 1 1.6383 4.7561 -3.7487 11 1 0.4077 3.3443 -5.2892 12 1 -0.1274 3.3128 -2.9242 13 6 1.5590 2.1063 1.1939 14 6 2.1917 1.5023 2.4210 15 6 3.3527 2.0433 2.9512 16 6 3.8948 1.4580 4.0844 17 7 3.2933 0.4058 4.6160 18 6 2.1931 -0.0846 4.0814 19 7 1.6492 0.4457 3.0043 20 1 -0.3634 0.5013 0.8971 21 1 -0.3633 0.5263 -0.8827 22 1 -0.3633 -1.0276 -0.0144 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 0.5533 1.9259 -1.4037 26 1 1.8104 3.1527 -1.1158 27 1 2.7630 1.9709 -5.5606 28 1 0.4743 2.0291 1.2690 29 1 1.8441 3.1555 1.1170 30 1 3.8210 2.9027 2.4949 31 1 4.7958 1.8553 4.5279 32 1 1.7247 -0.9439 4.5380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140347223.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:33 Heat of formation + Delta-G solvation = 58.529063 kcal Electronic energy + Delta-G solvation = -14874.382146 eV Core-core repulsion = 12449.578137 eV Total energy + Delta-G solvation = -2424.804009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89649 -37.47813 -33.72821 -32.55073 -32.15197 -29.69163 -28.31102 -25.55643 -24.24792 -23.25629 -22.08912 -19.42111 -17.43769 -16.90589 -16.43930 -15.41996 -15.31930 -14.95924 -14.28741 -14.10449 -13.63846 -13.20434 -12.98071 -12.47468 -11.96580 -11.64406 -11.45269 -11.11594 -10.78152 -10.67423 -10.56957 -10.36834 -10.08202 -9.92613 -9.46584 -9.34812 -9.08326 -8.58247 -7.41100 -6.06608 -4.03734 1.04214 1.15696 3.25899 3.34040 3.34740 3.84721 4.16791 4.25083 4.39599 4.59690 4.92139 5.16221 5.18720 5.26078 5.49783 5.63328 5.77888 5.89137 5.91060 6.03475 6.13384 6.43290 6.46701 6.52758 6.79222 6.90852 7.05329 7.11508 7.55778 7.82996 7.96102 8.19230 8.62921 9.02846 9.54545 11.06640 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045029 B = 0.006939 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.668556 B = 4033.969400 C = 4181.637779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.060 3.940 3 N -0.518 5.518 4 C 0.159 3.841 5 C -0.506 4.506 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.088 3.912 14 C 0.198 3.802 15 C -0.208 4.208 16 C 0.141 3.859 17 N -0.532 5.532 18 C 0.287 3.713 19 N -0.513 5.513 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.050 0.950 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.000 1.000 26 H 0.022 0.978 27 H 0.264 0.736 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.148 0.852 31 H 0.165 0.835 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.415 0.914 14.963 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.068 4.068 3 N -0.242 5.242 4 C 0.033 3.967 5 C -0.544 4.544 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.041 4.041 14 C 0.052 3.948 15 C -0.231 4.231 16 C -0.024 4.024 17 N -0.246 5.246 18 C -0.001 4.001 19 N -0.228 5.228 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.018 0.982 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.166 0.834 31 H 0.182 0.818 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.302 0.144 15.172 15.347 hybrid contribution -1.036 1.458 -0.704 1.922 sum -3.338 1.602 14.468 14.934 Atomic orbital electron populations 1.22320 0.99055 1.01386 1.01469 1.22018 0.92456 0.90367 1.01960 1.62267 1.58761 1.02268 1.00897 1.20275 0.95112 0.93831 0.87500 1.20981 1.22472 1.21063 0.89899 0.90216 1.24885 0.95810 0.96664 0.95947 1.69889 1.41304 1.42771 0.99951 0.86894 0.82325 0.83037 0.77692 1.20162 1.21187 1.19250 1.21146 0.97809 0.97604 0.87543 1.21767 0.90530 0.88951 0.93602 1.22794 0.97973 1.03810 0.98485 1.23161 0.97693 0.90083 0.91470 1.68359 1.10559 1.12265 1.33442 1.24889 0.88857 0.97538 0.88816 1.68309 1.34199 1.10376 1.09876 0.92933 0.92234 0.93111 0.89923 0.92110 0.98217 0.95960 0.92651 0.92744 0.89402 0.83429 0.81807 0.79237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 9.27 37.16 0.34 -2.89 16 2 C 0.06 1.18 5.64 -3.82 -0.02 1.16 16 3 N -0.52 -10.60 4.65 -237.52 -1.10 -11.71 16 4 C 0.16 3.71 3.67 -4.98 -0.02 3.69 16 5 C -0.51 -14.13 9.10 -34.44 -0.31 -14.44 16 6 H 0.08 2.46 7.71 -52.49 -0.40 2.05 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 9 Si 0.87 21.06 27.45 -169.99 -4.67 16.40 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.19 6.57 56.52 0.37 -5.82 16 13 C 0.09 1.46 5.08 -4.97 -0.03 1.44 16 14 C 0.20 3.04 5.72 -82.24 -0.47 2.56 16 15 C -0.21 -2.72 9.84 -39.31 -0.39 -3.11 16 16 C 0.14 1.68 11.30 -17.20 -0.19 1.49 16 17 N -0.53 -7.08 10.44 -14.58 -0.15 -7.23 16 18 C 0.29 3.79 12.28 -92.16 -1.13 2.66 16 19 N -0.51 -7.76 8.97 -10.79 -0.10 -7.86 16 20 H 0.05 0.87 6.33 -51.93 -0.33 0.54 16 21 H 0.06 1.14 6.22 -51.93 -0.32 0.82 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.08 1.81 7.15 -51.93 -0.37 1.44 16 24 H 0.06 1.14 6.33 -51.93 -0.33 0.81 16 25 H 0.00 0.01 5.02 -51.93 -0.26 -0.25 16 26 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.05 0.90 6.03 -51.93 -0.31 0.59 16 29 H 0.09 1.33 7.79 -51.93 -0.40 0.93 16 30 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.19 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 264.03 15.07 3.98 3.98 Total: -1.00 -31.20 264.03 -7.55 -38.75 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -3.96 Total: -0.17 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.32 Total: -5.60 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.58 Total: -53.37 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.20 -7.55 -38.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140347223.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.280 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds