Wall clock time and date at job start Sun Mar 29 2020 22:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.46967 * 2 1 4 4 C 1.46901 * 110.99631 * 296.56661 * 3 2 1 5 5 C 1.50697 * 109.47241 * 288.52689 * 4 3 2 6 6 H 1.07998 * 120.00277 * 0.83433 * 5 4 3 7 7 C 1.37879 * 119.99822 * 180.82873 * 5 4 3 8 8 N 1.31515 * 120.00103 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99863 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47106 * 90.00096 * 9 7 5 11 11 H 1.48507 * 109.46836 * 209.99711 * 9 7 5 12 12 H 1.48497 * 109.47294 * 329.99519 * 9 7 5 13 13 C 1.46900 * 111.00238 * 60.52387 * 3 2 1 14 14 C 1.50703 * 109.46912 * 66.04468 * 13 3 2 15 15 C 1.38617 * 120.44421 * 95.00382 * 14 13 3 16 16 C 1.38582 * 118.39551 * 179.69795 * 15 14 13 17 17 N 1.32345 * 119.10777 * 0.27626 * 16 15 14 18 18 C 1.31784 * 120.81454 * 359.97438 * 17 16 15 19 19 N 1.31803 * 121.75924 * 0.02562 * 18 17 16 20 20 H 1.08999 * 109.47334 * 299.19657 * 1 2 3 21 21 H 1.09000 * 109.46927 * 59.19616 * 1 2 3 22 22 H 1.09006 * 109.46910 * 179.19604 * 1 2 3 23 23 H 1.08991 * 109.47247 * 239.99512 * 2 1 3 24 24 H 1.08999 * 109.46460 * 119.99772 * 2 1 3 25 25 H 1.08999 * 109.47003 * 48.53176 * 4 3 2 26 26 H 1.09000 * 109.46926 * 168.52689 * 4 3 2 27 27 H 0.97000 * 120.00333 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.46828 * 306.04615 * 13 3 2 29 29 H 1.08995 * 109.46773 * 186.04747 * 13 3 2 30 30 H 1.07993 * 120.80560 * 359.96883 * 15 14 13 31 31 H 1.07998 * 120.44824 * 180.29448 * 16 15 14 32 32 H 1.08004 * 119.11726 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6168 2.0857 -1.2267 5 6 2.4064 1.5505 -2.3933 6 1 3.1250 0.7587 -2.2413 7 6 2.2113 2.0715 -3.6549 8 7 2.8999 1.6041 -4.6731 9 14 0.9688 3.4414 -3.9177 10 1 1.6383 4.7561 -3.7487 11 1 0.4077 3.3443 -5.2892 12 1 -0.1274 3.3128 -2.9242 13 6 1.5590 2.1063 1.1939 14 6 2.1917 1.5023 2.4210 15 6 3.3527 2.0433 2.9512 16 6 3.8948 1.4580 4.0844 17 7 3.2933 0.4058 4.6160 18 6 2.1931 -0.0846 4.0814 19 7 1.6492 0.4457 3.0043 20 1 -0.3634 0.5013 0.8971 21 1 -0.3633 0.5263 -0.8827 22 1 -0.3633 -1.0276 -0.0144 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 0.5533 1.9259 -1.4037 26 1 1.8104 3.1527 -1.1158 27 1 2.7630 1.9709 -5.5606 28 1 0.4743 2.0291 1.2690 29 1 1.8441 3.1555 1.1170 30 1 3.8210 2.9027 2.4949 31 1 4.7958 1.8553 4.5279 32 1 1.7247 -0.9439 4.5380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140347223.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:32 Heat of formation + Delta-G solvation = 37.101597 kcal Electronic energy + Delta-G solvation = -14875.311311 eV Core-core repulsion = 12449.578137 eV Total energy + Delta-G solvation = -2425.733174 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.93168 -39.00918 -35.06963 -34.38092 -33.28233 -31.31526 -29.93475 -27.07598 -25.26032 -24.80905 -23.56253 -21.04027 -18.91169 -18.47329 -17.61019 -16.88581 -16.66335 -16.25104 -16.05993 -15.37173 -14.88197 -14.54765 -14.43422 -14.33386 -13.42703 -13.31628 -12.93220 -12.76918 -12.41148 -12.26598 -11.90947 -11.77246 -11.61741 -11.53612 -11.43382 -10.75161 -10.50575 -10.16418 -9.00760 -8.25733 -6.28749 0.01897 0.14551 1.37051 1.38906 1.49126 2.36467 2.76750 3.07842 3.11686 3.35040 3.45494 3.60223 4.10726 4.20889 4.26492 4.32631 4.51900 4.57146 4.63256 4.70289 4.75771 4.94772 4.97480 5.09137 5.22111 5.42018 5.51539 5.56273 5.97074 6.09661 6.31902 6.62506 6.77028 7.17697 7.34105 8.91295 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045029 B = 0.006939 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.668556 B = 4033.969400 C = 4181.637779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.066 3.934 3 N -0.534 5.534 4 C 0.169 3.831 5 C -0.512 4.512 6 H 0.031 0.969 7 C 0.007 3.993 8 N -0.951 5.951 9 Si 0.947 3.053 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.248 1.248 13 C 0.091 3.909 14 C 0.175 3.825 15 C -0.211 4.211 16 C 0.146 3.854 17 N -0.542 5.542 18 C 0.281 3.719 19 N -0.532 5.532 20 H 0.066 0.934 21 H 0.042 0.958 22 H 0.066 0.934 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.003 0.997 26 H 0.035 0.965 27 H 0.266 0.734 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.165 0.835 31 H 0.201 0.799 32 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 2.277 16.821 17.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.062 4.062 3 N -0.258 5.258 4 C 0.042 3.958 5 C -0.550 4.550 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.770 3.230 10 H -0.187 1.187 11 H -0.211 1.211 12 H -0.171 1.171 13 C -0.037 4.037 14 C 0.029 3.971 15 C -0.233 4.233 16 C -0.020 4.020 17 N -0.256 5.256 18 C -0.006 4.006 19 N -0.247 5.247 20 H 0.085 0.915 21 H 0.061 0.939 22 H 0.085 0.915 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.020 0.980 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.182 0.818 31 H 0.218 0.782 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.235 1.501 17.063 17.431 hybrid contribution -0.636 0.935 -1.191 1.642 sum -3.870 2.435 15.871 16.517 Atomic orbital electron populations 1.22197 0.97262 1.02396 1.01219 1.21874 0.93854 0.89975 1.00482 1.62086 1.59726 1.02633 1.01377 1.20024 0.94183 0.94275 0.87283 1.21212 1.21870 1.19833 0.92081 0.95032 1.25848 0.98095 0.99644 0.95433 1.70059 1.43615 1.44875 1.00646 0.85720 0.79854 0.79502 0.77911 1.18728 1.21123 1.17115 1.21158 0.98132 0.98065 0.86347 1.21660 0.91756 0.89914 0.93727 1.23019 0.97183 1.04285 0.98800 1.23768 0.98267 0.89185 0.90746 1.68453 1.10692 1.12799 1.33661 1.25433 0.88894 0.98004 0.88306 1.68265 1.34953 1.10709 1.10776 0.91522 0.93896 0.91529 0.93602 0.91272 0.97952 0.94742 0.92511 0.92463 0.87854 0.81752 0.78239 0.76672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.89 9.27 71.98 0.67 -5.23 16 2 C 0.07 2.61 5.64 86.30 0.49 3.10 16 3 N -0.53 -21.63 4.65 -905.37 -4.21 -25.84 16 4 C 0.17 7.80 3.67 85.56 0.31 8.11 16 5 C -0.51 -29.33 9.10 25.60 0.23 -29.10 16 6 H 0.03 2.05 7.71 -2.91 -0.02 2.03 16 7 C 0.01 0.38 5.47 84.66 0.46 0.85 16 8 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 9 Si 0.95 43.06 27.45 68.60 1.88 44.95 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.25 -10.37 6.57 99.48 0.65 -9.72 16 13 C 0.09 2.87 5.08 85.56 0.43 3.31 16 14 C 0.18 5.05 5.72 42.58 0.24 5.29 16 15 C -0.21 -5.00 9.84 22.44 0.22 -4.78 16 16 C 0.15 3.05 11.30 84.70 0.96 4.01 16 17 N -0.54 -13.07 10.44 -200.05 -2.09 -15.15 16 18 C 0.28 6.83 12.28 180.88 2.22 9.05 16 19 N -0.53 -15.15 8.97 -188.07 -1.69 -16.83 16 20 H 0.07 2.09 6.33 -2.39 -0.02 2.08 16 21 H 0.04 1.60 6.22 -2.39 -0.01 1.59 16 22 H 0.07 2.03 8.14 -2.38 -0.02 2.02 16 23 H 0.05 2.11 7.15 -2.39 -0.02 2.09 16 24 H 0.07 2.59 6.33 -2.39 -0.02 2.57 16 25 H 0.00 0.13 5.02 -2.39 -0.01 0.12 16 26 H 0.03 1.51 7.20 -2.39 -0.02 1.50 16 27 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.06 1.77 6.03 -2.39 -0.01 1.75 16 29 H 0.10 2.88 7.79 -2.39 -0.02 2.86 16 30 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 31 H 0.20 2.58 8.06 -2.91 -0.02 2.55 16 32 H 0.22 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -68.60 264.03 1.50 -67.11 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.06 Total: 10.32 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 6.24 Total: -5.38 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -7.69 Total: -116.98 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.95 kcal Total: -68.60 1.50 -67.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140347223.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.207 kcal (2) G-P(sol) polarization free energy of solvation -68.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds