Wall clock time and date at job start Sun Mar 29 2020 21:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38168 * 120.02909 * 2 1 4 4 C 1.38243 * 120.05492 * 179.97438 * 3 2 1 5 5 C 1.50707 * 119.94446 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46996 * 90.00336 * 5 4 3 7 7 C 1.46497 * 120.00014 * 270.00295 * 6 5 4 8 8 C 1.36939 * 120.00099 * 90.00043 * 6 5 4 9 9 H 1.08000 * 120.00028 * 22.37102 * 8 6 5 10 10 C 1.38817 * 120.00225 * 202.37933 * 8 6 5 11 11 N 1.31615 * 119.99735 * 11.32295 * 10 8 6 12 12 Si 1.86794 * 119.99982 * 191.32879 * 10 8 6 13 13 H 1.48494 * 109.47218 * 89.99591 * 12 10 8 14 14 H 1.48506 * 109.46873 * 209.99504 * 12 10 8 15 15 H 1.48505 * 109.47280 * 329.99451 * 12 10 8 16 16 C 1.38289 * 120.11266 * 359.75395 * 4 3 2 17 17 C 1.38127 * 120.05592 * 0.50199 * 16 4 3 18 18 C 1.38712 * 120.02901 * 179.97438 * 2 1 3 19 19 O 1.35900 * 120.05489 * 359.97438 * 18 2 1 20 20 H 1.09005 * 109.46998 * 270.02024 * 1 2 3 21 21 H 1.09003 * 109.47442 * 30.01562 * 1 2 3 22 22 H 1.09003 * 109.47709 * 150.01776 * 1 2 3 23 23 H 1.07993 * 119.97635 * 359.96185 * 3 2 1 24 24 H 1.08997 * 109.47079 * 210.00166 * 5 4 3 25 25 H 1.08999 * 109.46891 * 330.00416 * 5 4 3 26 26 H 1.09002 * 109.47165 * 94.20283 * 7 6 5 27 27 H 1.09006 * 109.47319 * 214.20579 * 7 6 5 28 28 H 1.08999 * 109.47263 * 334.20526 * 7 6 5 29 29 H 0.97000 * 120.00207 * 180.02562 * 11 10 8 30 30 H 1.08004 * 119.97769 * 180.27232 * 16 4 3 31 31 H 1.08002 * 120.02544 * 179.76688 * 17 16 4 32 32 H 0.96701 * 113.99998 * 270.02461 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1962 0.0000 4 6 3.5808 1.1968 0.0005 5 6 4.3325 2.5031 0.0011 6 7 4.5755 2.9259 1.3825 7 6 3.5974 3.7701 2.0730 8 6 5.7170 2.5321 2.0283 9 1 6.5852 2.2358 1.4583 10 6 5.7583 2.5135 3.4158 11 7 4.6487 2.6556 4.1091 12 14 7.3888 2.2870 4.2987 13 1 8.0066 3.6146 4.5456 14 1 7.1586 1.5994 5.5946 15 1 8.2974 1.4670 3.4577 16 6 4.2751 0.0009 0.0062 17 6 3.5886 -1.1977 0.0009 18 6 2.2011 -1.2009 0.0005 19 8 1.5233 -2.3788 0.0016 20 1 -0.3633 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6585 2.1315 -0.0006 24 1 5.2852 2.3742 -0.5124 25 1 3.7424 3.2620 -0.5127 26 1 2.9163 3.1419 2.6470 27 1 4.1170 4.4522 2.7461 28 1 3.0312 4.3444 1.3397 29 1 4.6775 2.6429 5.0786 30 1 5.3551 0.0040 0.0111 31 1 4.1314 -2.1314 0.0015 32 1 1.3271 -2.7190 0.8853 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140578849.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:12 Heat of formation + Delta-G solvation = -2.570941 kcal Electronic energy + Delta-G solvation = -14938.306194 eV Core-core repulsion = 12478.559939 eV Total energy + Delta-G solvation = -2459.746256 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.38786 -36.73867 -35.08083 -32.35529 -31.45908 -29.48410 -26.70766 -25.82442 -25.23893 -21.93078 -21.43094 -19.80451 -17.85640 -16.73220 -15.41840 -15.30734 -14.94845 -14.34753 -13.64197 -13.38120 -13.20814 -12.96976 -12.64602 -12.30925 -11.85031 -11.72798 -11.30456 -11.15098 -10.85906 -10.65616 -10.61115 -10.29305 -10.00133 -9.96587 -9.86209 -8.57834 -8.22555 -7.81995 -6.79280 -5.75314 -3.19530 1.82787 1.93698 3.36465 3.42563 3.43808 4.14441 4.49820 4.70645 5.27117 5.30389 5.40888 5.61471 5.72459 5.82390 5.86802 5.97108 6.08792 6.15161 6.25253 6.43367 6.61718 6.69248 6.74801 6.93790 6.99951 7.36756 7.37583 7.41594 7.71795 7.78971 8.03572 8.36525 9.20474 9.82828 10.31970 11.29302 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.008226 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.518936 B = 3402.959232 C = 3661.583405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.116 4.116 3 C -0.101 4.101 4 C -0.080 4.080 5 C 0.179 3.821 6 N -0.591 5.591 7 C 0.164 3.836 8 C -0.252 4.252 9 H 0.070 0.930 10 C 0.002 3.998 11 N -0.905 5.905 12 Si 0.905 3.095 13 H -0.287 1.287 14 H -0.291 1.291 15 H -0.279 1.279 16 C -0.092 4.092 17 C -0.143 4.143 18 C 0.075 3.925 19 O -0.503 6.503 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.116 0.884 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.028 0.972 27 H 0.047 0.953 28 H -0.003 1.003 29 H 0.253 0.747 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 -4.431 -6.799 9.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.117 4.117 3 C -0.120 4.120 4 C -0.084 4.084 5 C 0.052 3.948 6 N -0.312 5.312 7 C 0.019 3.981 8 C -0.382 4.382 9 H 0.088 0.912 10 C -0.196 4.196 11 N -0.549 5.549 12 Si 0.735 3.265 13 H -0.214 1.214 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.111 4.111 17 C -0.162 4.162 18 C 0.030 3.970 19 O -0.312 6.312 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.134 0.866 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.016 0.984 29 H 0.063 0.937 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -5.346 -4.306 -7.203 9.950 hybrid contribution 0.768 -0.423 1.375 1.631 sum -4.578 -4.729 -5.828 8.791 Atomic orbital electron populations 1.20612 0.91571 1.02301 1.01794 1.20063 0.96002 0.92815 1.02773 1.20729 0.93891 0.96443 1.00924 1.21183 0.93874 0.97921 0.95394 1.19986 0.96684 0.89869 0.88219 1.44124 1.21716 1.55151 1.10191 1.20825 0.91580 0.92667 0.93024 1.19250 0.89480 1.40405 0.89070 0.91206 1.25071 0.96907 1.00760 0.96883 1.70073 1.24901 1.54257 1.05683 0.86238 0.83248 0.77796 0.79176 1.21413 1.21746 1.20432 1.20847 0.99809 0.91308 0.99154 1.21273 0.93314 0.98540 1.03024 1.18122 0.89756 0.84356 1.04727 1.84755 1.76804 1.36618 1.32981 0.91820 0.91959 0.91563 0.86598 0.92777 0.93392 0.95360 0.93475 0.98437 0.93717 0.86138 0.86476 0.76580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.79 36.00 0.35 -1.12 16 2 C -0.12 -2.01 5.89 -104.48 -0.62 -2.62 16 3 C -0.10 -1.88 9.35 -39.61 -0.37 -2.25 16 4 C -0.08 -1.61 5.46 -104.60 -0.57 -2.18 16 5 C 0.18 3.72 5.83 -5.19 -0.03 3.69 16 6 N -0.59 -14.83 2.91 -182.50 -0.53 -15.36 16 7 C 0.16 4.04 9.01 59.85 0.54 4.58 16 8 C -0.25 -6.87 9.67 -15.06 -0.15 -7.02 16 9 H 0.07 1.85 7.84 -52.49 -0.41 1.44 16 10 C 0.00 0.07 5.13 -17.43 -0.09 -0.02 16 11 N -0.90 -26.38 10.59 55.49 0.59 -25.79 16 12 Si 0.91 21.81 29.57 -169.99 -5.03 16.79 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 C -0.09 -1.79 9.69 -39.60 -0.38 -2.17 16 17 C -0.14 -2.55 9.99 -39.43 -0.39 -2.95 16 18 C 0.07 1.30 6.68 -39.22 -0.26 1.04 16 19 O -0.50 -7.47 12.55 -19.43 -0.24 -7.72 16 20 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 21 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 22 H 0.07 0.86 7.53 -51.93 -0.39 0.47 16 23 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 24 H 0.05 1.07 7.98 -51.93 -0.41 0.66 16 25 H 0.05 0.90 7.81 -51.93 -0.41 0.49 16 26 H 0.03 0.76 7.42 -51.93 -0.39 0.37 16 27 H 0.05 1.24 7.19 -51.93 -0.37 0.87 16 28 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.12 2.28 8.06 -52.48 -0.42 1.85 16 31 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.38 4.05 9.06 45.56 0.41 4.46 16 LS Contribution 274.82 15.07 4.14 4.14 Total: -1.00 -30.88 274.82 -6.66 -37.54 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -3.62 Total: 1.42 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.97 Total: -11.03 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.06 Total: -41.15 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.24 Total: -7.72 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.88 -6.66 -37.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140578849.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.972 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds