Wall clock time and date at job start Sun Mar 29 2020 21:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38168 * 120.02909 * 2 1 4 4 C 1.38243 * 120.05492 * 179.97438 * 3 2 1 5 5 C 1.50707 * 119.94446 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46996 * 90.00336 * 5 4 3 7 7 C 1.46497 * 120.00014 * 270.00295 * 6 5 4 8 8 C 1.36939 * 120.00099 * 90.00043 * 6 5 4 9 9 H 1.08000 * 120.00028 * 22.37102 * 8 6 5 10 10 C 1.38817 * 120.00225 * 202.37933 * 8 6 5 11 11 N 1.31615 * 119.99735 * 11.32295 * 10 8 6 12 12 Si 1.86794 * 119.99982 * 191.32879 * 10 8 6 13 13 H 1.48494 * 109.47218 * 89.99591 * 12 10 8 14 14 H 1.48506 * 109.46873 * 209.99504 * 12 10 8 15 15 H 1.48505 * 109.47280 * 329.99451 * 12 10 8 16 16 C 1.38289 * 120.11266 * 359.75395 * 4 3 2 17 17 C 1.38127 * 120.05592 * 0.50199 * 16 4 3 18 18 C 1.38712 * 120.02901 * 179.97438 * 2 1 3 19 19 O 1.35900 * 120.05489 * 359.97438 * 18 2 1 20 20 H 1.09005 * 109.46998 * 270.02024 * 1 2 3 21 21 H 1.09003 * 109.47442 * 30.01562 * 1 2 3 22 22 H 1.09003 * 109.47709 * 150.01776 * 1 2 3 23 23 H 1.07993 * 119.97635 * 359.96185 * 3 2 1 24 24 H 1.08997 * 109.47079 * 210.00166 * 5 4 3 25 25 H 1.08999 * 109.46891 * 330.00416 * 5 4 3 26 26 H 1.09002 * 109.47165 * 94.20283 * 7 6 5 27 27 H 1.09006 * 109.47319 * 214.20579 * 7 6 5 28 28 H 1.08999 * 109.47263 * 334.20526 * 7 6 5 29 29 H 0.97000 * 120.00207 * 180.02562 * 11 10 8 30 30 H 1.08004 * 119.97769 * 180.27232 * 16 4 3 31 31 H 1.08002 * 120.02544 * 179.76688 * 17 16 4 32 32 H 0.96701 * 113.99998 * 270.02461 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1962 0.0000 4 6 3.5808 1.1968 0.0005 5 6 4.3325 2.5031 0.0011 6 7 4.5755 2.9259 1.3825 7 6 3.5974 3.7701 2.0730 8 6 5.7170 2.5321 2.0283 9 1 6.5852 2.2358 1.4583 10 6 5.7583 2.5135 3.4158 11 7 4.6487 2.6556 4.1091 12 14 7.3888 2.2870 4.2987 13 1 8.0066 3.6146 4.5456 14 1 7.1586 1.5994 5.5946 15 1 8.2974 1.4670 3.4577 16 6 4.2751 0.0009 0.0062 17 6 3.5886 -1.1977 0.0009 18 6 2.2011 -1.2009 0.0005 19 8 1.5233 -2.3788 0.0016 20 1 -0.3633 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5141 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6585 2.1315 -0.0006 24 1 5.2852 2.3742 -0.5124 25 1 3.7424 3.2620 -0.5127 26 1 2.9163 3.1419 2.6470 27 1 4.1170 4.4522 2.7461 28 1 3.0312 4.3444 1.3397 29 1 4.6775 2.6429 5.0786 30 1 5.3551 0.0040 0.0111 31 1 4.1314 -2.1314 0.0015 32 1 1.3271 -2.7190 0.8853 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140578849.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:12 Heat of formation + Delta-G solvation = -22.006527 kcal Electronic energy + Delta-G solvation = -14939.148985 eV Core-core repulsion = 12478.559939 eV Total energy + Delta-G solvation = -2460.589046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74938 -38.21303 -36.78341 -33.82164 -33.19810 -31.11619 -28.23161 -27.61999 -26.87766 -23.57491 -23.00001 -21.30531 -19.14855 -18.73088 -16.95173 -16.81104 -16.54761 -15.84056 -15.49603 -15.06487 -14.79906 -14.31101 -13.99605 -13.84702 -13.29340 -13.14645 -12.92855 -12.86533 -12.65201 -12.42337 -12.15962 -12.07577 -11.92929 -11.80371 -11.24365 -10.64364 -9.62575 -9.25665 -8.78333 -7.82534 -5.29518 0.42668 0.52352 1.46024 1.47031 1.55245 2.49770 2.77136 3.33390 3.43412 3.88101 3.97140 4.03165 4.19887 4.48194 4.52015 4.73157 4.81353 4.82363 4.86660 4.94381 4.99485 5.18845 5.32076 5.35680 5.51030 5.61132 5.64655 5.73424 5.89175 6.06058 6.32821 6.89371 7.15271 7.86011 8.30005 9.20859 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.008226 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.518936 B = 3402.959232 C = 3661.583405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.123 4.123 3 C -0.110 4.110 4 C -0.101 4.101 5 C 0.179 3.821 6 N -0.607 5.607 7 C 0.179 3.821 8 C -0.257 4.257 9 H 0.073 0.927 10 C -0.053 4.053 11 N -0.937 5.937 12 Si 0.966 3.034 13 H -0.285 1.285 14 H -0.297 1.297 15 H -0.268 1.268 16 C -0.109 4.109 17 C -0.151 4.151 18 C 0.079 3.921 19 O -0.502 6.502 20 H 0.071 0.929 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.126 0.874 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.000 1.000 27 H 0.019 0.981 28 H 0.031 0.969 29 H 0.246 0.754 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.914 -5.283 -7.661 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.124 4.124 3 C -0.129 4.129 4 C -0.104 4.104 5 C 0.054 3.946 6 N -0.329 5.329 7 C 0.034 3.966 8 C -0.387 4.387 9 H 0.091 0.909 10 C -0.248 4.248 11 N -0.584 5.584 12 Si 0.794 3.206 13 H -0.212 1.212 14 H -0.224 1.224 15 H -0.193 1.193 16 C -0.128 4.128 17 C -0.170 4.170 18 C 0.035 3.965 19 O -0.313 6.313 20 H 0.090 0.910 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.144 0.856 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.018 0.982 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.135 0.865 31 H 0.153 0.847 32 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.889 -5.182 -8.100 11.276 hybrid contribution 0.849 -0.241 1.515 1.753 sum -5.040 -5.423 -6.585 9.908 Atomic orbital electron populations 1.20651 0.89028 1.03529 1.02656 1.20456 0.97967 0.92299 1.01670 1.20925 0.93508 0.97601 1.00827 1.21103 0.94645 0.97529 0.97165 1.20075 0.97538 0.91007 0.86002 1.44271 1.21428 1.55894 1.11321 1.20548 0.90932 0.91914 0.93208 1.19554 0.90556 1.39144 0.89438 0.90929 1.25782 0.99784 1.01502 0.97693 1.70242 1.26639 1.56244 1.05294 0.85279 0.79921 0.77644 0.77710 1.21204 1.22427 1.19257 1.20958 0.99902 0.91975 0.99951 1.21505 0.93971 0.98744 1.02744 1.18244 0.89739 0.85265 1.03272 1.84697 1.76293 1.35509 1.34851 0.90993 0.90596 0.90539 0.85645 0.92339 0.91301 0.98154 0.96195 0.95036 0.94436 0.86490 0.84651 0.74063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.53 9.79 71.23 0.70 -1.83 16 2 C -0.12 -4.00 5.89 -19.77 -0.12 -4.12 16 3 C -0.11 -3.94 9.35 22.25 0.21 -3.73 16 4 C -0.10 -3.99 5.46 -19.85 -0.11 -4.10 16 5 C 0.18 7.28 5.83 85.64 0.50 7.78 16 6 N -0.61 -30.36 2.91 -731.30 -2.13 -32.49 16 7 C 0.18 8.87 9.01 127.77 1.15 10.02 16 8 C -0.26 -14.00 9.67 84.03 0.81 -13.18 16 9 H 0.07 3.82 7.84 -2.91 -0.02 3.80 16 10 C -0.05 -2.95 5.13 84.86 0.44 -2.52 16 11 N -0.94 -55.74 10.59 21.65 0.23 -55.51 16 12 Si 0.97 45.17 29.57 68.60 2.03 47.20 16 13 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 C -0.11 -4.16 9.69 22.26 0.22 -3.95 16 17 C -0.15 -5.17 9.99 22.37 0.22 -4.95 16 18 C 0.08 2.58 6.68 22.51 0.15 2.73 16 19 O -0.50 -13.37 12.55 -92.42 -1.16 -14.53 16 20 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 21 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16 22 H 0.08 1.74 7.53 -2.39 -0.02 1.72 16 23 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 24 H 0.06 2.28 7.98 -2.39 -0.02 2.26 16 25 H 0.07 2.46 7.81 -2.39 -0.02 2.44 16 26 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 27 H 0.02 1.05 7.19 -2.38 -0.02 1.04 16 28 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 29 H 0.25 14.30 8.31 -92.71 -0.77 13.52 16 30 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 31 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 32 H 0.40 7.24 9.06 -74.06 -0.67 6.57 16 Total: -1.00 -65.28 274.82 3.58 -61.70 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.44 Total: 11.45 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.17 Total: -17.83 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -1.90 Total: -88.00 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -1.16 Total: -14.53 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -65.28 3.58 -61.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140578849.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.694 kcal (2) G-P(sol) polarization free energy of solvation -65.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds