Wall clock time and date at job start Sun Mar 29 2020 21:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38282 * 119.94649 * 2 1 4 4 C 1.38127 * 120.05686 * 179.97438 * 3 2 1 5 5 C 1.38751 * 119.93869 * 0.02562 * 4 3 2 6 6 O 1.35902 * 120.05350 * 179.97438 * 5 4 3 7 7 C 1.38706 * 119.89401 * 359.97438 * 5 4 3 8 8 C 1.50701 * 120.03063 * 179.97438 * 7 5 4 9 9 N 1.46504 * 109.46965 * 284.99980 * 8 7 5 10 10 C 1.46503 * 119.99678 * 269.99714 * 9 8 7 11 11 C 1.36934 * 120.00027 * 89.99656 * 9 8 7 12 12 H 1.07992 * 119.99892 * 22.74841 * 11 9 8 13 13 C 1.38818 * 119.99941 * 202.74124 * 11 9 8 14 14 N 1.31619 * 119.99535 * 11.08141 * 13 11 9 15 15 Si 1.86797 * 120.00158 * 191.08028 * 13 11 9 16 16 H 1.48502 * 109.46922 * 60.00190 * 15 13 11 17 17 H 1.48494 * 109.47201 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46917 * 300.00266 * 15 13 11 19 19 C 1.38164 * 119.94463 * 0.25105 * 7 5 4 20 20 H 1.08995 * 109.47002 * 89.99617 * 1 2 3 21 21 H 1.09003 * 109.47148 * 210.00527 * 1 2 3 22 22 H 1.09009 * 109.46668 * 329.99996 * 1 2 3 23 23 H 1.08001 * 119.97338 * 359.97438 * 3 2 1 24 24 H 1.07999 * 120.02913 * 179.97438 * 4 3 2 25 25 H 0.96697 * 114.00379 * 270.02193 * 6 5 4 26 26 H 1.08999 * 109.47411 * 165.00070 * 8 7 5 27 27 H 1.09002 * 109.47246 * 44.99691 * 8 7 5 28 28 H 1.09003 * 109.46826 * 94.27092 * 10 9 8 29 29 H 1.09001 * 109.47153 * 214.26699 * 10 9 8 30 30 H 1.08993 * 109.47307 * 334.27358 * 10 9 8 31 31 H 0.97009 * 119.99557 * 179.97438 * 14 13 11 32 32 H 1.07998 * 119.97557 * 179.74724 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2734 -0.0002 0.0005 6 8 5.6324 -0.0003 0.0005 7 6 3.5787 -1.2007 0.0005 8 6 4.3302 -2.5070 0.0000 9 7 4.8830 -2.7517 -1.3345 10 6 4.0970 -3.4851 -2.3298 11 6 6.1344 -2.2948 -1.6515 12 1 6.8501 -2.0933 -0.8683 13 6 6.4830 -2.0908 -2.9797 14 7 5.5578 -2.1237 -3.9153 15 14 8.2649 -1.7697 -3.4389 16 1 9.0994 -2.9253 -3.0224 17 1 8.3719 -1.5854 -4.9085 18 1 8.7399 -0.5425 -2.7507 19 6 2.1970 -1.1980 -0.0047 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8901 0.5139 23 1 1.6560 2.1328 -0.0004 24 1 4.1173 2.1369 0.0001 25 1 6.0258 0.0000 -0.8828 26 1 3.6511 -3.3170 0.2660 27 1 5.1416 -2.4597 0.7263 28 1 3.5538 -2.7780 -2.9567 29 1 4.7641 -4.0832 -2.9507 30 1 3.3884 -4.1398 -1.8225 31 1 5.8014 -1.9808 -4.8434 32 1 1.6556 -2.1325 -0.0088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140621203.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:35 Heat of formation + Delta-G solvation = -3.352019 kcal Electronic energy + Delta-G solvation = -15256.619088 eV Core-core repulsion = 12796.838962 eV Total energy + Delta-G solvation = -2459.780126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.23301 -36.12074 -35.36332 -32.12733 -31.05894 -30.07217 -26.32659 -25.79529 -25.28416 -21.93384 -21.43055 -19.66146 -17.42971 -16.71856 -15.29678 -15.03054 -14.90913 -14.19470 -13.62425 -13.36887 -13.06175 -13.00040 -12.88130 -12.22179 -11.83664 -11.46688 -11.21825 -11.00318 -10.84686 -10.76130 -10.61144 -10.33280 -10.01115 -9.87795 -9.60456 -8.58574 -8.21641 -7.67720 -6.79695 -5.76978 -3.22407 1.90341 1.98171 3.34710 3.41819 3.42934 4.20538 4.47613 5.16002 5.28254 5.28901 5.38284 5.59276 5.70413 5.75046 5.84534 5.90096 6.06179 6.21351 6.29207 6.57978 6.63590 6.75243 6.77183 6.94790 7.10399 7.31966 7.38300 7.50507 7.73843 7.78884 8.36179 8.60828 9.19582 9.82814 10.33639 11.26679 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034884 B = 0.009412 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.462286 B = 2974.110188 C = 3273.232357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.110 4.110 3 C -0.122 4.122 4 C -0.155 4.155 5 C 0.133 3.867 6 O -0.502 6.502 7 C -0.104 4.104 8 C 0.185 3.815 9 N -0.593 5.593 10 C 0.164 3.836 11 C -0.255 4.255 12 H 0.076 0.924 13 C -0.001 4.001 14 N -0.904 5.904 15 Si 0.903 3.097 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.281 1.281 19 C -0.106 4.106 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.401 0.599 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.045 0.955 30 H -0.004 1.004 31 H 0.253 0.747 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.723 3.401 6.086 9.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.110 4.110 3 C -0.140 4.140 4 C -0.174 4.174 5 C 0.087 3.913 6 O -0.317 6.317 7 C -0.108 4.108 8 C 0.058 3.942 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.384 4.384 12 H 0.093 0.907 13 C -0.200 4.200 14 N -0.548 5.548 15 Si 0.733 3.267 16 H -0.210 1.210 17 H -0.217 1.217 18 H -0.207 1.207 19 C -0.125 4.125 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.131 0.869 24 H 0.135 0.865 25 H 0.261 0.739 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.015 0.985 31 H 0.064 0.936 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.734 3.368 6.460 9.921 hybrid contribution 0.996 0.377 -1.101 1.531 sum -5.739 3.745 5.359 8.699 Atomic orbital electron populations 1.20690 0.91941 1.01882 1.01747 1.19758 0.95457 0.93358 1.02463 1.20635 0.93491 0.96981 1.02931 1.21323 0.94471 0.97633 1.03975 1.18239 0.83632 0.91318 0.98077 1.84574 1.15525 1.96234 1.35326 1.21487 0.93913 0.98120 0.97315 1.19856 0.95123 0.89916 0.89264 1.44035 1.15614 1.62349 1.09465 1.20810 0.93288 0.93429 0.90548 1.19306 0.88436 1.39034 0.91644 0.90654 1.25121 0.97566 1.00691 0.96610 1.70073 1.30990 1.53492 1.00280 0.86365 0.84763 0.78401 0.77208 1.20989 1.21721 1.20742 1.20743 0.93318 0.96948 1.01471 0.91768 0.92054 0.92251 0.86900 0.86522 0.73865 0.93665 0.92295 0.95416 0.93611 0.98525 0.93622 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 36.01 0.36 -0.97 16 2 C -0.11 -1.82 5.88 -104.60 -0.62 -2.43 16 3 C -0.12 -2.02 9.69 -39.61 -0.38 -2.40 16 4 C -0.16 -2.85 9.99 -39.43 -0.39 -3.25 16 5 C 0.13 2.78 6.66 -39.22 -0.26 2.51 16 6 O -0.50 -10.81 11.77 -19.43 -0.23 -11.03 16 7 C -0.10 -2.17 5.48 -104.48 -0.57 -2.74 16 8 C 0.19 3.99 5.53 -5.19 -0.03 3.96 16 9 N -0.59 -14.77 2.91 -182.50 -0.53 -15.31 16 10 C 0.16 4.05 9.01 59.85 0.54 4.59 16 11 C -0.25 -6.68 7.18 -15.06 -0.11 -6.79 16 12 H 0.08 1.95 7.51 -52.49 -0.39 1.56 16 13 C 0.00 -0.03 5.13 -17.43 -0.09 -0.12 16 14 N -0.90 -25.65 10.59 55.49 0.59 -25.06 16 15 Si 0.90 21.16 29.57 -169.99 -5.03 16.13 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.11 -1.94 9.32 -39.60 -0.37 -2.31 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 21 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 22 H 0.06 0.64 8.09 -51.92 -0.42 0.22 16 23 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 24 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 25 H 0.40 8.74 7.31 45.56 0.33 9.07 16 26 H 0.04 0.88 7.68 -51.93 -0.40 0.48 16 27 H 0.06 1.28 7.90 -51.93 -0.41 0.87 16 28 H 0.03 0.74 7.41 -51.93 -0.38 0.36 16 29 H 0.05 1.21 7.21 -51.93 -0.37 0.83 16 30 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.11 1.90 8.00 -52.49 -0.42 1.48 16 LS Contribution 269.64 15.07 4.06 4.06 Total: -1.00 -28.91 269.64 -6.76 -35.66 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.70 Total: 5.48 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.92 Total: -9.94 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.06 Total: -40.37 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.23 Total: -11.03 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.91 -6.76 -35.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140621203.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.310 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds