Wall clock time and date at job start Sun Mar 29 2020 21:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38282 * 119.94649 * 2 1 4 4 C 1.38127 * 120.05686 * 179.97438 * 3 2 1 5 5 C 1.38751 * 119.93869 * 0.02562 * 4 3 2 6 6 O 1.35902 * 120.05350 * 179.97438 * 5 4 3 7 7 C 1.38706 * 119.89401 * 359.97438 * 5 4 3 8 8 C 1.50701 * 120.03063 * 179.97438 * 7 5 4 9 9 N 1.46504 * 109.46965 * 284.99980 * 8 7 5 10 10 C 1.46503 * 119.99678 * 269.99714 * 9 8 7 11 11 C 1.36934 * 120.00027 * 89.99656 * 9 8 7 12 12 H 1.07992 * 119.99892 * 22.74841 * 11 9 8 13 13 C 1.38818 * 119.99941 * 202.74124 * 11 9 8 14 14 N 1.31619 * 119.99535 * 11.08141 * 13 11 9 15 15 Si 1.86797 * 120.00158 * 191.08028 * 13 11 9 16 16 H 1.48502 * 109.46922 * 60.00190 * 15 13 11 17 17 H 1.48494 * 109.47201 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46917 * 300.00266 * 15 13 11 19 19 C 1.38164 * 119.94463 * 0.25105 * 7 5 4 20 20 H 1.08995 * 109.47002 * 89.99617 * 1 2 3 21 21 H 1.09003 * 109.47148 * 210.00527 * 1 2 3 22 22 H 1.09009 * 109.46668 * 329.99996 * 1 2 3 23 23 H 1.08001 * 119.97338 * 359.97438 * 3 2 1 24 24 H 1.07999 * 120.02913 * 179.97438 * 4 3 2 25 25 H 0.96697 * 114.00379 * 270.02193 * 6 5 4 26 26 H 1.08999 * 109.47411 * 165.00070 * 8 7 5 27 27 H 1.09002 * 109.47246 * 44.99691 * 8 7 5 28 28 H 1.09003 * 109.46826 * 94.27092 * 10 9 8 29 29 H 1.09001 * 109.47153 * 214.26699 * 10 9 8 30 30 H 1.08993 * 109.47307 * 334.27358 * 10 9 8 31 31 H 0.97009 * 119.99557 * 179.97438 * 14 13 11 32 32 H 1.07998 * 119.97557 * 179.74724 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2734 -0.0002 0.0005 6 8 5.6324 -0.0003 0.0005 7 6 3.5787 -1.2007 0.0005 8 6 4.3302 -2.5070 0.0000 9 7 4.8830 -2.7517 -1.3345 10 6 4.0970 -3.4851 -2.3298 11 6 6.1344 -2.2948 -1.6515 12 1 6.8501 -2.0933 -0.8683 13 6 6.4830 -2.0908 -2.9797 14 7 5.5578 -2.1237 -3.9153 15 14 8.2649 -1.7697 -3.4389 16 1 9.0994 -2.9253 -3.0224 17 1 8.3719 -1.5854 -4.9085 18 1 8.7399 -0.5425 -2.7507 19 6 2.1970 -1.1980 -0.0047 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8901 0.5139 23 1 1.6560 2.1328 -0.0004 24 1 4.1173 2.1369 0.0001 25 1 6.0258 0.0000 -0.8828 26 1 3.6511 -3.3170 0.2660 27 1 5.1416 -2.4597 0.7263 28 1 3.5538 -2.7780 -2.9567 29 1 4.7641 -4.0832 -2.9507 30 1 3.3884 -4.1398 -1.8225 31 1 5.8014 -1.9808 -4.8434 32 1 1.6556 -2.1325 -0.0088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140621203.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:35 Heat of formation + Delta-G solvation = -21.022961 kcal Electronic energy + Delta-G solvation = -15257.385357 eV Core-core repulsion = 12796.838962 eV Total energy + Delta-G solvation = -2460.546395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.70631 -37.65795 -37.21218 -33.89649 -32.40972 -31.78482 -28.10093 -27.50997 -26.77486 -23.64833 -22.97737 -21.21722 -18.98709 -18.70327 -16.85500 -16.72201 -16.52449 -15.75488 -15.40358 -14.93752 -14.71694 -14.49190 -14.22951 -13.57261 -13.32925 -13.22929 -12.86191 -12.59036 -12.50676 -12.34827 -12.23089 -12.13400 -11.94527 -11.75377 -11.17896 -10.59898 -9.65776 -9.12229 -8.78951 -7.81103 -5.28900 0.46852 0.55149 1.48143 1.50387 1.56588 2.50418 2.79328 3.30361 3.68898 3.85779 4.03312 4.08765 4.16821 4.46631 4.58714 4.72221 4.83931 4.87303 4.91202 4.98801 5.02357 5.27214 5.30492 5.32642 5.52299 5.64924 5.71623 5.75999 5.82780 6.11055 6.34367 6.96065 7.16201 7.86665 8.32710 9.21547 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034884 B = 0.009412 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.462286 B = 2974.110188 C = 3273.232357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.107 4.107 3 C -0.119 4.119 4 C -0.162 4.162 5 C 0.094 3.906 6 O -0.510 6.510 7 C -0.128 4.128 8 C 0.187 3.813 9 N -0.607 5.607 10 C 0.180 3.820 11 C -0.251 4.251 12 H 0.075 0.925 13 C -0.049 4.049 14 N -0.936 5.936 15 Si 0.963 3.037 16 H -0.283 1.283 17 H -0.299 1.299 18 H -0.271 1.271 19 C -0.115 4.115 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.149 0.851 24 H 0.131 0.869 25 H 0.393 0.607 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.000 1.000 29 H 0.020 0.980 30 H 0.028 0.972 31 H 0.247 0.753 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 4.238 6.991 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.107 4.107 3 C -0.137 4.137 4 C -0.180 4.180 5 C 0.050 3.950 6 O -0.323 6.323 7 C -0.131 4.131 8 C 0.061 3.939 9 N -0.329 5.329 10 C 0.035 3.965 11 C -0.381 4.381 12 H 0.092 0.908 13 C -0.244 4.244 14 N -0.582 5.582 15 Si 0.792 3.208 16 H -0.209 1.209 17 H -0.225 1.225 18 H -0.196 1.196 19 C -0.133 4.133 20 H 0.090 0.910 21 H 0.093 0.907 22 H 0.101 0.899 23 H 0.167 0.833 24 H 0.149 0.851 25 H 0.252 0.748 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.019 0.981 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.185 4.212 7.418 11.822 hybrid contribution 1.319 0.145 -1.271 1.838 sum -6.866 4.357 6.147 10.194 Atomic orbital electron populations 1.20766 0.88713 1.03794 1.02763 1.20261 0.97809 0.92538 1.00095 1.21101 0.92843 0.98684 1.01042 1.21584 0.95620 0.97339 1.03480 1.18619 0.83358 0.92620 1.00451 1.84569 1.16519 1.96429 1.34788 1.21428 0.95100 0.97344 0.99278 1.19868 0.95324 0.91421 0.87241 1.44203 1.15639 1.62704 1.10397 1.20536 0.92891 0.92788 0.90314 1.19484 0.89225 1.37803 0.91636 0.90779 1.25744 1.00844 1.01256 0.96584 1.70240 1.32529 1.55379 1.00078 0.85403 0.80707 0.78467 0.76254 1.20935 1.22503 1.19601 1.21019 0.92488 0.98687 1.01145 0.91001 0.90706 0.89946 0.83347 0.85073 0.74811 0.91609 0.93253 0.98148 0.96112 0.95381 0.94386 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.16 10.01 71.24 0.71 -1.45 16 2 C -0.11 -3.19 5.88 -19.85 -0.12 -3.31 16 3 C -0.12 -3.55 9.69 22.25 0.22 -3.34 16 4 C -0.16 -5.71 9.99 22.37 0.22 -5.48 16 5 C 0.09 3.94 6.66 22.50 0.15 4.09 16 6 O -0.51 -22.35 11.77 -92.45 -1.09 -23.44 16 7 C -0.13 -5.24 5.48 -19.77 -0.11 -5.35 16 8 C 0.19 8.01 5.53 85.63 0.47 8.49 16 9 N -0.61 -30.45 2.91 -731.30 -2.13 -32.57 16 10 C 0.18 8.95 9.01 127.77 1.15 10.10 16 11 C -0.25 -13.38 7.18 84.04 0.60 -12.77 16 12 H 0.07 3.90 7.51 -2.91 -0.02 3.87 16 13 C -0.05 -2.67 5.13 84.86 0.44 -2.23 16 14 N -0.94 -54.33 10.59 21.65 0.23 -54.10 16 15 Si 0.96 44.17 29.57 68.60 2.03 46.20 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 C -0.11 -3.97 9.32 22.26 0.21 -3.77 16 20 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.07 1.38 8.09 -2.39 -0.02 1.36 16 22 H 0.08 1.36 8.09 -2.38 -0.02 1.35 16 23 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 24 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 25 H 0.39 17.70 7.31 -74.06 -0.54 17.16 16 26 H 0.07 2.48 7.68 -2.39 -0.02 2.46 16 27 H 0.05 2.16 7.90 -2.39 -0.02 2.14 16 28 H 0.00 0.01 7.41 -2.39 -0.02 -0.01 16 29 H 0.02 1.10 7.21 -2.39 -0.02 1.08 16 30 H 0.03 1.18 7.84 -2.39 -0.02 1.17 16 31 H 0.25 14.09 8.31 -92.70 -0.77 13.31 16 32 H 0.13 3.99 8.00 -2.91 -0.02 3.97 16 Total: -1.00 -62.27 269.64 3.56 -58.71 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.57 Total: 20.21 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 3.95 Total: -15.02 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -1.90 Total: -86.67 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -1.09 Total: -23.44 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -62.27 3.56 -58.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140621203.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.692 kcal (2) G-P(sol) polarization free energy of solvation -62.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds