Wall clock time and date at job start Sun Mar 29 2020 21:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38288 * 119.97275 * 2 1 4 4 C 1.38250 * 120.11207 * 179.76809 * 3 2 1 5 5 C 1.38163 * 120.05133 * 0.51507 * 4 3 2 6 6 C 1.50699 * 120.02547 * 179.76437 * 5 4 3 7 7 N 1.46498 * 109.47403 * 259.72413 * 6 5 4 8 8 C 1.46502 * 120.00399 * 270.00132 * 7 6 5 9 9 C 1.36939 * 119.99803 * 90.00027 * 7 6 5 10 10 H 1.08001 * 120.00475 * 22.05245 * 9 7 6 11 11 C 1.38820 * 119.99730 * 202.05373 * 9 7 6 12 12 N 1.31618 * 120.00008 * 11.25327 * 11 9 7 13 13 Si 1.86798 * 120.00008 * 191.25550 * 11 9 7 14 14 H 1.48499 * 109.46969 * 59.99877 * 13 11 9 15 15 H 1.48494 * 109.47436 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47113 * 300.00014 * 13 11 9 17 17 C 1.38706 * 119.94852 * 359.49187 * 5 4 3 18 18 O 1.35895 * 120.05944 * 180.27693 * 17 5 4 19 19 C 1.38121 * 119.97166 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.46421 * 269.97519 * 1 2 3 21 21 H 1.09000 * 109.46787 * 29.97222 * 1 2 3 22 22 H 1.08997 * 109.46948 * 149.97477 * 1 2 3 23 23 H 1.08003 * 119.94255 * 0.03113 * 3 2 1 24 24 H 1.07996 * 119.96951 * 180.25703 * 4 3 2 25 25 H 1.08996 * 109.47294 * 139.72468 * 6 5 4 26 26 H 1.09008 * 109.47257 * 19.72477 * 6 5 4 27 27 H 1.08993 * 109.47069 * 94.64779 * 8 7 6 28 28 H 1.08999 * 109.47340 * 214.65708 * 8 7 6 29 29 H 1.09004 * 109.46416 * 334.65118 * 8 7 6 30 30 H 0.97003 * 119.99944 * 179.97438 * 12 11 9 31 31 H 0.96701 * 114.00498 * 89.99689 * 18 17 5 32 32 H 1.07996 * 120.02881 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2013 0.0048 5 6 4.2752 0.0071 -0.0011 6 6 5.7822 0.0115 -0.0011 7 7 6.2712 -0.2268 -1.3614 8 6 6.5194 -1.5954 -1.8214 9 6 6.4964 0.8298 -2.2029 10 1 6.6643 1.8167 -1.7977 11 6 6.5087 0.6323 -3.5769 12 7 6.0894 -0.5087 -4.0816 13 14 7.1203 1.9859 -4.7096 14 1 8.5325 2.3062 -4.3805 15 1 7.0315 1.5292 -6.1198 16 1 6.2826 3.1987 -4.5290 17 6 3.5847 -1.1958 -0.0012 18 8 4.2658 -2.3717 -0.0013 19 6 2.1971 -1.1965 -0.0005 20 1 -0.3632 -0.0004 1.0277 21 1 -0.3633 0.8903 -0.5134 22 1 -0.3633 -0.8897 -0.5142 23 1 1.6565 2.1325 0.0005 24 1 4.1176 2.1382 0.0090 25 1 6.1479 -0.7747 0.6593 26 1 6.1428 0.9783 0.3504 27 1 5.6394 -1.9676 -2.3459 28 1 7.3749 -1.6022 -2.4967 29 1 6.7285 -2.2346 -0.9636 30 1 6.0977 -0.6465 -5.0417 31 1 4.4630 -2.7122 0.8820 32 1 1.6571 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140950903.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:15 Heat of formation + Delta-G solvation = 0.325763 kcal Electronic energy + Delta-G solvation = -15130.030339 eV Core-core repulsion = 12670.409694 eV Total energy + Delta-G solvation = -2459.620645 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.32467 -36.26571 -35.43244 -32.53183 -30.76187 -29.28207 -27.69514 -25.74977 -24.33706 -22.06639 -21.37071 -19.98779 -17.36053 -16.62045 -15.43057 -15.30485 -14.67613 -14.53762 -13.53947 -13.32735 -13.14945 -13.03762 -12.70527 -12.27682 -11.86549 -11.26321 -11.21073 -11.05373 -10.91515 -10.77752 -10.52424 -10.12932 -9.95982 -9.89300 -9.68408 -8.48554 -8.18226 -7.80390 -6.68369 -5.65669 -3.09731 1.87525 1.94043 3.41739 3.46334 3.47526 4.20056 4.56134 4.77055 5.26976 5.34775 5.48136 5.61730 5.66370 5.76574 5.84570 5.91200 6.03741 6.12717 6.29977 6.47878 6.63692 6.69356 6.94554 7.00911 7.06397 7.30329 7.45700 7.53349 7.83477 8.00253 8.28550 8.45759 9.29970 9.92836 10.42681 11.37831 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030155 B = 0.009227 C = 0.008196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.322006 B = 3033.751690 C = 3415.516589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C -0.132 4.132 4 C -0.094 4.094 5 C -0.107 4.107 6 C 0.187 3.813 7 N -0.586 5.586 8 C 0.174 3.826 9 C -0.254 4.254 10 H 0.068 0.932 11 C 0.002 3.998 12 N -0.902 5.902 13 Si 0.905 3.095 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.114 3.886 18 O -0.485 6.485 19 C -0.150 4.150 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.113 0.887 24 H 0.119 0.881 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.039 0.961 29 H -0.001 1.001 30 H 0.252 0.748 31 H 0.373 0.627 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 -0.247 10.089 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.113 4.113 5 C -0.111 4.111 6 C 0.060 3.940 7 N -0.307 5.307 8 C 0.030 3.970 9 C -0.384 4.384 10 H 0.086 0.914 11 C -0.197 4.197 12 N -0.546 5.546 13 Si 0.735 3.265 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.210 1.210 17 C 0.068 3.932 18 O -0.294 6.294 19 C -0.168 4.168 20 H 0.081 0.919 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.131 0.869 24 H 0.137 0.863 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.227 0.773 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.933 -0.276 9.247 11.560 hybrid contribution 0.108 0.626 -0.467 0.789 sum -6.825 0.350 8.780 11.126 Atomic orbital electron populations 1.20691 0.91833 1.02262 1.01475 1.19539 0.95365 0.92884 1.02133 1.20908 0.94379 0.96897 1.02814 1.20865 0.93490 0.97598 0.99357 1.21509 1.00152 0.91990 0.97459 1.19821 0.86517 0.98947 0.88713 1.44120 1.72695 1.03922 1.09925 1.20731 0.99709 0.82705 0.93896 1.19207 1.42122 0.89794 0.87292 0.91399 1.25083 1.00291 0.97192 0.97108 1.70098 1.49188 1.24007 1.11278 0.86332 0.78793 0.81411 0.79983 1.21016 1.21625 1.20969 1.18218 0.89202 0.85156 1.00581 1.84986 1.76450 1.36167 1.31750 1.21122 0.93608 0.97624 1.04484 0.91890 0.91964 0.92066 0.86904 0.86342 0.93644 0.93154 0.95058 0.94268 0.98254 0.93729 0.77274 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 36.01 0.36 -0.96 16 2 C -0.10 -1.62 5.88 -104.64 -0.62 -2.23 16 3 C -0.13 -2.24 9.70 -39.56 -0.38 -2.63 16 4 C -0.09 -1.79 9.67 -39.60 -0.38 -2.18 16 5 C -0.11 -2.20 5.48 -104.48 -0.57 -2.77 16 6 C 0.19 4.03 5.51 -5.20 -0.03 4.00 16 7 N -0.59 -15.43 2.91 -182.50 -0.53 -15.96 16 8 C 0.17 4.58 7.95 59.85 0.48 5.05 16 9 C -0.25 -7.22 9.68 -15.06 -0.15 -7.37 16 10 H 0.07 1.86 7.84 -52.49 -0.41 1.45 16 11 C 0.00 0.06 5.14 -17.43 -0.09 -0.03 16 12 N -0.90 -27.47 10.56 55.49 0.59 -26.88 16 13 Si 0.90 22.47 29.57 -169.99 -5.03 17.45 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.11 2.22 6.68 -39.22 -0.26 1.96 16 18 O -0.49 -8.91 11.49 -19.41 -0.22 -9.14 16 19 C -0.15 -2.63 9.64 -39.43 -0.38 -3.01 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 22 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 23 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 24 H 0.12 2.14 8.03 -52.49 -0.42 1.71 16 25 H 0.05 0.88 7.57 -51.93 -0.39 0.49 16 26 H 0.05 1.03 7.89 -51.92 -0.41 0.62 16 27 H 0.03 0.91 7.40 -51.93 -0.38 0.53 16 28 H 0.04 1.09 7.19 -51.93 -0.37 0.72 16 29 H 0.00 -0.02 7.66 -51.93 -0.40 -0.42 16 30 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.37 4.71 9.06 45.56 0.41 5.13 16 32 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 272.56 15.07 4.11 4.11 Total: -1.00 -32.98 272.56 -6.73 -39.71 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.62 Total: 0.87 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -2.02 Total: -10.16 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.06 Total: -42.84 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.22 Total: -9.14 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.98 -6.73 -39.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140950903.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.036 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds