Wall clock time and date at job start Sun Mar 29 2020 21:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38288 * 119.97275 * 2 1 4 4 C 1.38250 * 120.11207 * 179.76809 * 3 2 1 5 5 C 1.38163 * 120.05133 * 0.51507 * 4 3 2 6 6 C 1.50699 * 120.02547 * 179.76437 * 5 4 3 7 7 N 1.46498 * 109.47403 * 259.72413 * 6 5 4 8 8 C 1.46502 * 120.00399 * 270.00132 * 7 6 5 9 9 C 1.36939 * 119.99803 * 90.00027 * 7 6 5 10 10 H 1.08001 * 120.00475 * 22.05245 * 9 7 6 11 11 C 1.38820 * 119.99730 * 202.05373 * 9 7 6 12 12 N 1.31618 * 120.00008 * 11.25327 * 11 9 7 13 13 Si 1.86798 * 120.00008 * 191.25550 * 11 9 7 14 14 H 1.48499 * 109.46969 * 59.99877 * 13 11 9 15 15 H 1.48494 * 109.47436 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47113 * 300.00014 * 13 11 9 17 17 C 1.38706 * 119.94852 * 359.49187 * 5 4 3 18 18 O 1.35895 * 120.05944 * 180.27693 * 17 5 4 19 19 C 1.38121 * 119.97166 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.46421 * 269.97519 * 1 2 3 21 21 H 1.09000 * 109.46787 * 29.97222 * 1 2 3 22 22 H 1.08997 * 109.46948 * 149.97477 * 1 2 3 23 23 H 1.08003 * 119.94255 * 0.03113 * 3 2 1 24 24 H 1.07996 * 119.96951 * 180.25703 * 4 3 2 25 25 H 1.08996 * 109.47294 * 139.72468 * 6 5 4 26 26 H 1.09008 * 109.47257 * 19.72477 * 6 5 4 27 27 H 1.08993 * 109.47069 * 94.64779 * 8 7 6 28 28 H 1.08999 * 109.47340 * 214.65708 * 8 7 6 29 29 H 1.09004 * 109.46416 * 334.65118 * 8 7 6 30 30 H 0.97003 * 119.99944 * 179.97438 * 12 11 9 31 31 H 0.96701 * 114.00498 * 89.99689 * 18 17 5 32 32 H 1.07996 * 120.02881 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5804 1.2013 0.0048 5 6 4.2752 0.0071 -0.0011 6 6 5.7822 0.0115 -0.0011 7 7 6.2712 -0.2268 -1.3614 8 6 6.5194 -1.5954 -1.8214 9 6 6.4964 0.8298 -2.2029 10 1 6.6643 1.8167 -1.7977 11 6 6.5087 0.6323 -3.5769 12 7 6.0894 -0.5087 -4.0816 13 14 7.1203 1.9859 -4.7096 14 1 8.5325 2.3062 -4.3805 15 1 7.0315 1.5292 -6.1198 16 1 6.2826 3.1987 -4.5290 17 6 3.5847 -1.1958 -0.0012 18 8 4.2658 -2.3717 -0.0013 19 6 2.1971 -1.1965 -0.0005 20 1 -0.3632 -0.0004 1.0277 21 1 -0.3633 0.8903 -0.5134 22 1 -0.3633 -0.8897 -0.5142 23 1 1.6565 2.1325 0.0005 24 1 4.1176 2.1382 0.0090 25 1 6.1479 -0.7747 0.6593 26 1 6.1428 0.9783 0.3504 27 1 5.6394 -1.9676 -2.3459 28 1 7.3749 -1.6022 -2.4967 29 1 6.7285 -2.2346 -0.9636 30 1 6.0977 -0.6465 -5.0417 31 1 4.4630 -2.7122 0.8820 32 1 1.6571 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140950903.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:14 Heat of formation + Delta-G solvation = -21.455383 kcal Electronic energy + Delta-G solvation = -15130.974840 eV Core-core repulsion = 12670.409694 eV Total energy + Delta-G solvation = -2460.565146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74197 -37.64800 -37.34044 -34.17221 -32.59687 -30.66420 -29.20137 -27.87786 -25.92301 -23.47081 -23.18320 -21.53659 -18.86000 -18.58120 -17.09045 -16.80052 -16.34467 -16.07317 -15.37335 -15.02083 -14.61813 -14.43745 -14.29388 -13.53596 -13.35976 -12.97357 -12.90616 -12.70121 -12.59553 -12.42894 -12.18931 -12.07877 -11.92736 -11.78761 -11.19078 -10.63160 -9.57989 -9.22880 -8.76495 -7.80822 -5.28602 0.48899 0.53626 1.44174 1.47425 1.53817 2.50544 2.82859 3.33346 3.45255 3.91699 4.03210 4.07442 4.26359 4.39070 4.57146 4.70770 4.83823 4.88078 4.92168 4.97124 5.03989 5.22663 5.34770 5.35295 5.57534 5.63837 5.70975 5.81663 5.83078 6.13618 6.32428 7.04111 7.15754 7.88051 8.33074 9.21954 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030155 B = 0.009227 C = 0.008196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.322006 B = 3033.751690 C = 3415.516589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.107 4.107 5 C -0.138 4.138 6 C 0.188 3.812 7 N -0.605 5.605 8 C 0.197 3.803 9 C -0.261 4.261 10 H 0.074 0.926 11 C -0.057 4.057 12 N -0.939 5.939 13 Si 0.970 3.030 14 H -0.275 1.275 15 H -0.296 1.296 16 H -0.275 1.275 17 C 0.104 3.896 18 O -0.502 6.502 19 C -0.163 4.163 20 H 0.087 0.913 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.141 0.859 24 H 0.121 0.879 25 H 0.064 0.936 26 H 0.056 0.944 27 H -0.005 1.005 28 H 0.010 0.990 29 H 0.028 0.972 30 H 0.246 0.754 31 H 0.397 0.603 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 0.620 11.125 13.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.092 4.092 3 C -0.157 4.157 4 C -0.126 4.126 5 C -0.141 4.141 6 C 0.062 3.938 7 N -0.326 5.326 8 C 0.052 3.948 9 C -0.392 4.392 10 H 0.092 0.908 11 C -0.252 4.252 12 N -0.586 5.586 13 Si 0.798 3.202 14 H -0.201 1.201 15 H -0.222 1.222 16 H -0.201 1.201 17 C 0.059 3.941 18 O -0.314 6.314 19 C -0.181 4.181 20 H 0.105 0.895 21 H 0.093 0.907 22 H 0.087 0.913 23 H 0.159 0.841 24 H 0.139 0.861 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.013 0.987 28 H 0.029 0.971 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.254 0.746 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.340 0.604 10.353 13.308 hybrid contribution 0.452 0.326 -0.607 0.824 sum -7.888 0.930 9.745 12.572 Atomic orbital electron populations 1.20777 0.88680 1.03311 1.03331 1.20077 0.97688 0.92130 0.99308 1.21257 0.93698 0.98561 1.02198 1.21081 0.94788 0.97291 0.99407 1.21411 0.99349 0.93210 1.00175 1.19883 0.87622 0.99865 0.86442 1.44244 1.74176 1.03171 1.11048 1.20341 0.96827 0.83640 0.93986 1.19569 1.41232 0.90466 0.87910 0.90845 1.25873 1.01206 0.99461 0.98655 1.70296 1.51300 1.26082 1.10878 0.85295 0.78596 0.78814 0.77479 1.20079 1.22223 1.20075 1.18457 0.90188 0.85064 1.00419 1.84908 1.76561 1.35871 1.34028 1.21421 0.93032 0.99133 1.04547 0.89482 0.90713 0.91287 0.84074 0.86079 0.91818 0.92546 0.98655 0.97116 0.95399 0.94528 0.74589 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.19 10.01 71.24 0.71 -1.48 16 2 C -0.09 -2.75 5.88 -19.88 -0.12 -2.87 16 3 C -0.14 -4.41 9.70 22.28 0.22 -4.19 16 4 C -0.11 -3.96 9.67 22.25 0.22 -3.74 16 5 C -0.14 -5.59 5.48 -19.77 -0.11 -5.70 16 6 C 0.19 7.99 5.51 85.63 0.47 8.46 16 7 N -0.60 -32.03 2.91 -731.30 -2.13 -34.16 16 8 C 0.20 10.57 7.95 127.77 1.02 11.59 16 9 C -0.26 -14.94 9.68 84.03 0.81 -14.12 16 10 H 0.07 4.00 7.84 -2.91 -0.02 3.98 16 11 C -0.06 -3.35 5.14 84.86 0.44 -2.92 16 12 N -0.94 -58.76 10.56 21.65 0.23 -58.53 16 13 Si 0.97 46.69 29.57 68.60 2.03 48.71 16 14 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 16 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 17 C 0.10 3.96 6.68 22.51 0.15 4.11 16 18 O -0.50 -18.05 11.49 -92.37 -1.06 -19.11 16 19 C -0.16 -5.42 9.64 22.37 0.22 -5.20 16 20 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 22 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 23 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 24 H 0.12 4.28 8.03 -2.91 -0.02 4.25 16 25 H 0.06 2.41 7.57 -2.39 -0.02 2.39 16 26 H 0.06 2.28 7.89 -2.38 -0.02 2.26 16 27 H 0.00 -0.30 7.40 -2.39 -0.02 -0.32 16 28 H 0.01 0.59 7.19 -2.39 -0.02 0.57 16 29 H 0.03 1.29 7.66 -2.39 -0.02 1.27 16 30 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.40 9.51 9.06 -74.06 -0.67 8.84 16 32 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -71.31 272.56 3.53 -67.78 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.44 Total: 11.38 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 4.02 Total: -16.07 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -1.90 Total: -92.69 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.06 Total: -19.11 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -71.31 3.53 -67.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140950903.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.323 kcal (2) G-P(sol) polarization free energy of solvation -71.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds