Wall clock time and date at job start Sun Mar 29 2020 21:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36767 * 119.99702 * 2 1 4 4 H 1.08003 * 119.99693 * 203.87690 * 3 2 1 5 5 C 1.39066 * 120.00214 * 23.87211 * 3 2 1 6 6 N 1.31370 * 119.99545 * 15.14880 * 5 3 2 7 7 Si 1.86789 * 120.00219 * 195.14997 * 5 3 2 8 8 H 1.48506 * 109.47134 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47521 * 119.99938 * 7 5 3 10 10 H 1.48494 * 109.47416 * 240.00142 * 7 5 3 11 11 C 1.34769 * 120.00456 * 180.27171 * 2 1 3 12 12 O 1.21833 * 120.00341 * 179.72587 * 11 2 1 13 13 C 1.41383 * 119.99921 * 359.72650 * 11 2 1 14 14 C 1.35692 * 120.00129 * 179.97438 * 13 11 2 15 15 C 1.41716 * 119.99932 * 179.97438 * 14 13 11 16 16 C 1.38136 * 126.95666 * 180.02562 * 15 14 13 17 17 N 1.33313 * 107.57699 * 179.97438 * 16 15 14 18 18 C 1.30824 * 109.80009 * 0.02562 * 17 16 15 19 19 N 1.34700 * 109.43906 * 359.76344 * 18 17 16 20 20 H 0.97005 * 126.45608 * 180.26124 * 19 18 17 21 21 H 1.08997 * 109.47522 * 264.54631 * 1 2 3 22 22 H 1.08997 * 109.47290 * 24.55450 * 1 2 3 23 23 H 1.09000 * 109.46833 * 144.54991 * 1 2 3 24 24 H 0.97001 * 119.99587 * 179.97438 * 6 5 3 25 25 H 1.08000 * 119.99911 * 359.97438 * 13 11 2 26 26 H 1.08000 * 119.99960 * 359.97438 * 14 13 11 27 27 H 1.08001 * 126.20949 * 359.97438 * 16 15 14 28 28 H 1.07994 * 125.27836 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1488 1.1845 0.0000 4 1 3.1595 1.2245 -0.3786 5 6 1.5427 2.3373 0.4874 6 7 0.4502 2.2490 1.2117 7 14 2.2818 4.0112 0.1122 8 1 3.5018 3.8391 -0.7168 9 1 1.2925 4.8344 -0.6289 10 1 2.6383 4.6911 1.3833 11 6 2.1389 -1.1671 -0.0055 12 8 3.3573 -1.1670 -0.0106 13 6 1.4321 -2.3915 -0.0055 14 6 2.1106 -3.5666 -0.0116 15 6 1.4021 -4.7939 -0.0110 16 6 1.9429 -6.0651 -0.0162 17 7 0.9310 -6.9330 -0.0129 18 6 -0.2068 -6.2873 -0.0065 19 7 0.0304 -4.9613 -0.0003 20 1 -0.6362 -4.2566 0.0087 21 1 -0.3634 -0.0977 1.0230 22 1 -0.3634 0.9347 -0.4270 23 1 -0.3633 -0.8372 -0.5960 24 1 0.0277 3.0531 1.5520 25 1 0.3521 -2.3916 -0.0006 26 1 3.1906 -3.5665 -0.0169 27 1 2.9945 -6.3110 -0.0218 28 1 -1.1843 -6.7462 -0.0024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142273297.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:10 Heat of formation + Delta-G solvation = 49.419435 kcal Electronic energy + Delta-G solvation = -14205.160883 eV Core-core repulsion = 11644.128756 eV Total energy + Delta-G solvation = -2561.032127 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.81241 -38.67924 -34.99328 -33.65085 -32.07251 -31.76087 -28.75036 -26.46832 -25.03855 -23.13415 -21.34674 -20.63183 -18.55254 -17.54536 -16.99083 -16.17952 -14.93652 -14.88357 -14.52639 -14.01413 -13.92747 -13.61735 -13.12611 -12.74033 -12.01005 -11.73346 -11.44023 -11.30895 -10.93113 -10.45730 -10.40871 -10.26158 -10.03840 -9.77476 -9.15938 -8.48864 -7.82116 -7.57890 -6.52246 -3.95108 1.04763 2.72631 3.09167 3.14894 3.17460 3.24817 3.34038 4.02957 4.38787 4.69120 4.86911 5.07394 5.14894 5.42727 5.54744 5.55447 5.88965 6.08952 6.26304 6.65885 6.73135 6.77761 6.87614 7.01192 7.38391 7.40405 8.02839 8.06798 8.36841 9.07354 9.27543 9.91704 10.52026 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.071186 B = 0.005769 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.240250 B = 4852.196898 C = 5179.961564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.429 5.429 3 C -0.297 4.297 4 H 0.104 0.896 5 C 0.029 3.971 6 N -0.869 5.869 7 Si 0.929 3.071 8 H -0.265 1.265 9 H -0.279 1.279 10 H -0.279 1.279 11 C 0.459 3.541 12 O -0.600 6.600 13 C -0.170 4.170 14 C -0.051 4.051 15 C 0.013 3.987 16 C -0.003 4.003 17 N -0.497 5.497 18 C 0.179 3.821 19 N -0.562 5.562 20 H 0.421 0.579 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.027 0.973 24 H 0.271 0.729 25 H 0.105 0.895 26 H 0.149 0.851 27 H 0.176 0.824 28 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.512 -8.560 -2.134 10.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.145 5.145 3 C -0.425 4.425 4 H 0.122 0.878 5 C -0.176 4.176 6 N -0.507 5.507 7 Si 0.755 3.245 8 H -0.189 1.189 9 H -0.205 1.205 10 H -0.205 1.205 11 C 0.252 3.748 12 O -0.488 6.488 13 C -0.193 4.193 14 C -0.074 4.074 15 C -0.101 4.101 16 C -0.154 4.154 17 N -0.216 5.216 18 C -0.103 4.103 19 N -0.166 5.166 20 H 0.260 0.740 21 H 0.071 0.929 22 H 0.095 0.905 23 H 0.046 0.954 24 H 0.081 0.919 25 H 0.123 0.877 26 H 0.166 0.834 27 H 0.193 0.807 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.012 -9.242 -2.040 10.710 hybrid contribution -0.562 2.143 0.027 2.216 sum -5.574 -7.099 -2.013 9.248 Atomic orbital electron populations 1.21552 0.81401 1.00245 1.00518 1.43658 1.05515 1.05371 1.59982 1.19834 1.00568 0.84015 1.38112 0.87830 1.25463 0.96628 1.00567 0.94960 1.69993 1.19902 1.30043 1.30751 0.85815 0.79272 0.80895 0.78534 1.18926 1.20459 1.20518 1.16644 0.87912 0.83961 0.86301 1.90667 1.13401 1.87359 1.57414 1.22205 0.99129 0.94314 1.03605 1.20466 1.00257 0.88058 0.98664 1.19404 0.82408 0.96741 1.11585 1.22924 0.98877 0.87243 1.06377 1.69982 0.97918 1.34251 1.19455 1.24873 0.99713 0.79755 1.05951 1.43459 1.07759 1.09474 1.55896 0.73994 0.92856 0.90497 0.95402 0.91907 0.87746 0.83396 0.80692 0.77783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.29 8.26 59.85 0.49 2.79 15 2 N -0.43 -10.96 3.00 -125.54 -0.38 -11.34 15 3 C -0.30 -8.18 9.23 -15.04 -0.14 -8.32 15 4 H 0.10 2.99 7.44 -52.48 -0.39 2.60 15 5 C 0.03 0.74 4.98 -17.44 -0.09 0.65 15 6 N -0.87 -22.50 10.95 55.50 0.61 -21.89 15 7 Si 0.93 20.11 29.58 -169.99 -5.03 15.08 15 8 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 9 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 10 H -0.28 -6.04 7.11 56.52 0.40 -5.63 15 11 C 0.46 11.38 7.39 -15.07 -0.11 11.26 15 12 O -0.60 -16.94 15.81 5.07 0.08 -16.86 15 13 C -0.17 -3.25 8.66 -39.30 -0.34 -3.59 15 14 C -0.05 -0.88 9.43 -39.17 -0.37 -1.25 15 15 C 0.01 0.19 6.79 -83.70 -0.57 -0.38 15 16 C 0.00 -0.04 11.92 -16.95 -0.20 -0.24 15 17 N -0.50 -7.17 11.19 -14.03 -0.16 -7.32 15 18 C 0.18 2.04 12.99 -90.42 -1.17 0.86 15 19 N -0.56 -6.69 6.02 -11.75 -0.07 -6.76 15 20 H 0.42 3.97 8.01 -40.82 -0.33 3.64 15 21 H 0.05 1.16 7.89 -51.93 -0.41 0.75 15 22 H 0.08 1.74 6.75 -51.93 -0.35 1.39 15 23 H 0.03 0.48 6.40 -51.93 -0.33 0.15 15 24 H 0.27 6.56 8.31 -40.82 -0.34 6.22 15 25 H 0.10 1.68 5.19 -52.49 -0.27 1.41 15 26 H 0.15 2.66 7.46 -52.49 -0.39 2.27 15 27 H 0.18 2.15 8.06 -52.49 -0.42 1.73 15 28 H 0.21 1.40 8.06 -52.49 -0.42 0.97 15 LS Contribution 251.07 15.07 3.78 3.78 Total: -1.00 -32.72 251.07 -6.11 -38.83 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -2.45 Total: 4.69 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.50 Total: 1.78 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.00 Total: -47.31 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.08 Total: -16.86 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.72 -6.11 -38.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142273297.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.252 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds