Wall clock time and date at job start Sun Mar 29 2020 21:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36767 * 119.99702 * 2 1 4 4 H 1.08003 * 119.99693 * 203.87690 * 3 2 1 5 5 C 1.39066 * 120.00214 * 23.87211 * 3 2 1 6 6 N 1.31370 * 119.99545 * 15.14880 * 5 3 2 7 7 Si 1.86789 * 120.00219 * 195.14997 * 5 3 2 8 8 H 1.48506 * 109.47134 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47521 * 119.99938 * 7 5 3 10 10 H 1.48494 * 109.47416 * 240.00142 * 7 5 3 11 11 C 1.34769 * 120.00456 * 180.27171 * 2 1 3 12 12 O 1.21833 * 120.00341 * 179.72587 * 11 2 1 13 13 C 1.41383 * 119.99921 * 359.72650 * 11 2 1 14 14 C 1.35692 * 120.00129 * 179.97438 * 13 11 2 15 15 C 1.41716 * 119.99932 * 179.97438 * 14 13 11 16 16 C 1.38136 * 126.95666 * 180.02562 * 15 14 13 17 17 N 1.33313 * 107.57699 * 179.97438 * 16 15 14 18 18 C 1.30824 * 109.80009 * 0.02562 * 17 16 15 19 19 N 1.34700 * 109.43906 * 359.76344 * 18 17 16 20 20 H 0.97005 * 126.45608 * 180.26124 * 19 18 17 21 21 H 1.08997 * 109.47522 * 264.54631 * 1 2 3 22 22 H 1.08997 * 109.47290 * 24.55450 * 1 2 3 23 23 H 1.09000 * 109.46833 * 144.54991 * 1 2 3 24 24 H 0.97001 * 119.99587 * 179.97438 * 6 5 3 25 25 H 1.08000 * 119.99911 * 359.97438 * 13 11 2 26 26 H 1.08000 * 119.99960 * 359.97438 * 14 13 11 27 27 H 1.08001 * 126.20949 * 359.97438 * 16 15 14 28 28 H 1.07994 * 125.27836 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1488 1.1845 0.0000 4 1 3.1595 1.2245 -0.3786 5 6 1.5427 2.3373 0.4874 6 7 0.4502 2.2490 1.2117 7 14 2.2818 4.0112 0.1122 8 1 3.5018 3.8391 -0.7168 9 1 1.2925 4.8344 -0.6289 10 1 2.6383 4.6911 1.3833 11 6 2.1389 -1.1671 -0.0055 12 8 3.3573 -1.1670 -0.0106 13 6 1.4321 -2.3915 -0.0055 14 6 2.1106 -3.5666 -0.0116 15 6 1.4021 -4.7939 -0.0110 16 6 1.9429 -6.0651 -0.0162 17 7 0.9310 -6.9330 -0.0129 18 6 -0.2068 -6.2873 -0.0065 19 7 0.0304 -4.9613 -0.0003 20 1 -0.6362 -4.2566 0.0087 21 1 -0.3634 -0.0977 1.0230 22 1 -0.3634 0.9347 -0.4270 23 1 -0.3633 -0.8372 -0.5960 24 1 0.0277 3.0531 1.5520 25 1 0.3521 -2.3916 -0.0006 26 1 3.1906 -3.5665 -0.0169 27 1 2.9945 -6.3110 -0.0218 28 1 -1.1843 -6.7462 -0.0024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142273297.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:10 Heat of formation + Delta-G solvation = 27.194140 kcal Electronic energy + Delta-G solvation = -14206.124644 eV Core-core repulsion = 11644.128756 eV Total energy + Delta-G solvation = -2561.995888 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.87776 -40.53067 -36.85526 -35.10378 -33.72628 -33.14988 -30.08977 -28.23890 -26.76285 -24.59295 -22.50493 -21.81173 -20.05687 -18.96878 -18.85423 -17.77981 -16.75158 -16.14641 -15.98799 -15.75512 -15.28206 -14.91760 -14.44724 -14.21189 -13.80937 -13.44219 -13.24598 -12.96610 -12.64538 -12.31970 -12.12953 -11.54671 -11.14107 -11.06713 -10.91477 -10.45695 -9.74227 -8.84914 -8.43938 -5.99883 -0.27335 1.34077 1.39705 1.54039 1.58216 2.17388 2.19636 2.25484 2.60268 3.13881 3.15975 3.79747 4.00701 4.08150 4.25301 4.51922 4.55400 4.71279 4.77175 4.94739 5.24815 5.35615 5.40448 5.46274 5.66759 6.07558 6.45285 6.48516 7.02196 7.11948 7.39744 8.01002 8.59563 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.071186 B = 0.005769 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.240250 B = 4852.196898 C = 5179.961564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.451 5.451 3 C -0.345 4.345 4 H 0.072 0.928 5 C -0.001 4.001 6 N -0.888 5.888 7 Si 0.992 3.008 8 H -0.273 1.273 9 H -0.262 1.262 10 H -0.274 1.274 11 C 0.455 3.545 12 O -0.650 6.650 13 C -0.209 4.209 14 C 0.000 4.000 15 C -0.027 4.027 16 C 0.013 3.987 17 N -0.534 5.534 18 C 0.214 3.786 19 N -0.552 5.552 20 H 0.435 0.565 21 H 0.045 0.955 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.277 0.723 25 H 0.137 0.863 26 H 0.134 0.866 27 H 0.189 0.811 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 -10.271 -2.286 12.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.167 5.167 3 C -0.473 4.473 4 H 0.090 0.910 5 C -0.204 4.204 6 N -0.525 5.525 7 Si 0.815 3.185 8 H -0.198 1.198 9 H -0.186 1.186 10 H -0.200 1.200 11 C 0.250 3.750 12 O -0.541 6.541 13 C -0.231 4.231 14 C -0.023 4.023 15 C -0.141 4.141 16 C -0.139 4.139 17 N -0.253 5.253 18 C -0.069 4.069 19 N -0.156 5.156 20 H 0.276 0.724 21 H 0.064 0.936 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.155 0.845 26 H 0.152 0.848 27 H 0.206 0.794 28 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -6.967 -10.939 -2.189 13.153 hybrid contribution 0.014 2.247 0.079 2.248 sum -6.953 -8.692 -2.110 11.329 Atomic orbital electron populations 1.21517 0.79278 1.01153 1.00666 1.43829 1.06931 1.04985 1.60947 1.19702 1.00353 0.86111 1.41139 0.91000 1.26167 0.96974 1.03162 0.94109 1.70042 1.20506 1.31124 1.30846 0.84909 0.78489 0.76784 0.78363 1.19790 1.18616 1.19972 1.17502 0.87641 0.85541 0.84307 1.90610 1.15789 1.88409 1.59332 1.21896 1.00437 0.92023 1.08733 1.20474 0.99831 0.88731 0.93253 1.19081 0.83931 0.95623 1.15482 1.23335 0.99954 0.87164 1.03482 1.70083 0.98827 1.34806 1.21568 1.25930 1.00799 0.79215 1.00913 1.43478 1.06881 1.10352 1.54888 0.72364 0.93607 0.92107 0.91176 0.91311 0.84504 0.84805 0.79424 0.72943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.02 8.26 127.77 1.06 6.08 15 2 N -0.45 -23.77 3.00 -669.27 -2.01 -25.78 15 3 C -0.34 -19.92 9.23 84.12 0.78 -19.14 15 4 H 0.07 4.47 7.44 -2.91 -0.02 4.44 15 5 C 0.00 -0.06 4.98 84.96 0.42 0.36 15 6 N -0.89 -46.49 10.95 21.68 0.24 -46.25 15 7 Si 0.99 42.03 29.58 68.60 2.03 44.06 15 8 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 9 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 11 C 0.46 23.29 7.39 85.02 0.63 23.92 15 12 O -0.65 -38.50 15.81 -4.78 -0.08 -38.57 15 13 C -0.21 -7.87 8.66 22.45 0.19 -7.67 15 14 C 0.00 -0.01 9.43 22.54 0.21 0.21 15 15 C -0.03 -0.73 6.79 38.97 0.26 -0.47 15 16 C 0.01 0.34 11.92 84.44 1.01 1.34 15 17 N -0.53 -13.32 11.19 -198.30 -2.22 -15.54 15 18 C 0.21 3.79 12.99 180.28 2.34 6.13 15 19 N -0.55 -10.86 6.02 -191.10 -1.15 -12.01 15 20 H 0.44 6.27 8.01 -92.70 -0.74 5.53 15 21 H 0.05 2.00 7.89 -2.39 -0.02 1.98 15 22 H 0.06 2.77 6.75 -2.39 -0.02 2.75 15 23 H 0.07 2.34 6.40 -2.39 -0.02 2.33 15 24 H 0.28 13.41 8.31 -92.71 -0.77 12.64 15 25 H 0.14 4.10 5.19 -2.91 -0.02 4.09 15 26 H 0.13 4.83 7.46 -2.91 -0.02 4.81 15 27 H 0.19 4.18 8.06 -2.91 -0.02 4.16 15 28 H 0.25 1.76 8.06 -2.91 -0.02 1.74 15 Total: -1.00 -74.32 251.07 4.17 -70.15 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.45 Total: 13.17 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 6.90 Total: 10.76 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -5.14 Total: -99.57 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.08 Total: -38.57 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -74.32 4.17 -70.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142273297.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.345 kcal (2) G-P(sol) polarization free energy of solvation -74.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds