Wall clock time and date at job start Sun Mar 29 2020 22:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38059 * 119.57318 * 2 1 4 4 C 1.38843 * 119.32665 * 179.74802 * 3 2 1 5 5 C 1.38342 * 118.50387 * 0.49061 * 4 3 2 6 6 C 1.50701 * 120.44960 * 179.75761 * 5 4 3 7 7 N 1.46501 * 109.46953 * 3.27249 * 6 5 4 8 8 C 1.46503 * 120.00299 * 268.97382 * 7 6 5 9 9 C 1.36939 * 120.00257 * 89.25090 * 7 6 5 10 10 H 1.07998 * 119.99664 * 336.76212 * 9 7 6 11 11 C 1.38810 * 120.00123 * 156.75184 * 9 7 6 12 12 N 1.31622 * 120.00458 * 347.39745 * 11 9 7 13 13 Si 1.86801 * 119.99894 * 167.38902 * 11 9 7 14 14 H 1.48503 * 109.47215 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46820 * 120.00483 * 13 11 9 16 16 H 1.48495 * 109.47651 * 240.00283 * 13 11 9 17 17 C 1.39089 * 119.09919 * 359.49009 * 5 4 3 18 18 N 1.39006 * 119.70299 * 180.25204 * 17 5 4 19 19 N 1.31949 * 119.56889 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.47517 * 270.02181 * 1 2 3 21 21 H 1.09000 * 109.47126 * 30.02443 * 1 2 3 22 22 H 1.09000 * 109.47293 * 150.02229 * 1 2 3 23 23 H 1.08000 * 120.34057 * 0.02562 * 3 2 1 24 24 H 1.08004 * 120.74539 * 180.25518 * 4 3 2 25 25 H 1.09000 * 109.47336 * 243.27325 * 6 5 4 26 26 H 1.08994 * 109.47093 * 123.26675 * 6 5 4 27 27 H 1.09000 * 109.47443 * 265.15662 * 8 7 6 28 28 H 1.08999 * 109.46462 * 25.14732 * 8 7 6 29 29 H 1.08993 * 109.47426 * 145.14968 * 8 7 6 30 30 H 0.97000 * 120.00238 * 179.97438 * 12 11 9 31 31 H 0.96999 * 120.00278 * 5.64268 * 18 17 5 32 32 H 0.97007 * 119.99658 * 185.64798 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2007 0.0000 4 6 3.5767 1.1948 0.0053 5 6 4.2317 -0.0238 0.0001 6 6 5.7376 -0.0814 0.0000 7 7 6.2783 1.2776 0.0849 8 6 6.5727 2.0267 -1.1392 9 6 6.5138 1.8456 1.3084 10 1 5.9829 1.4911 2.1795 11 6 7.4351 2.8769 1.4291 12 7 8.2576 3.1442 0.4369 13 14 7.5076 3.8855 2.9997 14 1 6.4855 3.3878 3.9553 15 1 8.8565 3.7586 3.6077 16 1 7.2387 5.3117 2.6851 17 6 3.4815 -1.1950 0.0005 18 7 4.1267 -2.4262 0.0006 19 7 2.1581 -1.1476 0.0005 20 1 -0.3634 0.0004 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8902 -0.5135 23 1 1.6469 2.1352 0.0004 24 1 4.1328 2.1206 0.0096 25 1 6.0832 -0.5531 -0.9199 26 1 6.0790 -0.6623 0.8567 27 1 7.6241 1.9014 -1.3979 28 1 5.9514 1.6520 -1.9527 29 1 6.3616 3.0837 -0.9780 30 1 8.9011 3.8650 0.5211 31 1 5.0923 -2.4678 0.0829 32 1 3.6112 -3.2439 -0.0818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143208133.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:07 Heat of formation + Delta-G solvation = 56.565035 kcal Electronic energy + Delta-G solvation = -14950.864267 eV Core-core repulsion = 12525.975091 eV Total energy + Delta-G solvation = -2424.889176 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79933 -35.87464 -34.64468 -32.43837 -30.70021 -30.13862 -27.91113 -25.86605 -24.65906 -22.30141 -21.75446 -20.14825 -17.04376 -16.59888 -16.50655 -14.93513 -14.85149 -14.40313 -14.23950 -13.50042 -13.20529 -13.10317 -12.54548 -12.50049 -12.15634 -11.60189 -11.37053 -10.97778 -10.85887 -10.72311 -10.43983 -10.18306 -10.00764 -9.90535 -8.98745 -8.78217 -8.55582 -7.21426 -6.79041 -5.74663 -3.22736 1.83221 2.10806 3.36421 3.44393 3.46709 3.92408 4.43119 4.48035 4.98595 5.34058 5.39145 5.42835 5.75692 5.77188 5.79297 5.95417 6.00760 6.15666 6.34495 6.36687 6.55401 6.75996 6.83614 7.13291 7.26517 7.37702 7.70394 7.73031 7.80983 7.87420 8.37578 8.72060 9.21757 9.84244 10.33280 11.29882 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034045 B = 0.008023 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.244029 B = 3489.210413 C = 3809.776012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.146 3.854 3 C -0.235 4.235 4 C -0.010 4.010 5 C -0.206 4.206 6 C 0.194 3.806 7 N -0.597 5.597 8 C 0.161 3.839 9 C -0.255 4.255 10 H 0.068 0.932 11 C 0.004 3.996 12 N -0.907 5.907 13 Si 0.902 3.098 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.289 1.289 17 C 0.395 3.605 18 N -0.857 5.857 19 N -0.554 5.554 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.121 0.879 24 H 0.147 0.853 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.032 0.968 28 H -0.002 1.002 29 H 0.042 0.958 30 H 0.252 0.748 31 H 0.407 0.593 32 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.899 -6.326 -2.058 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.009 3.991 3 C -0.258 4.258 4 C -0.035 4.035 5 C -0.216 4.216 6 C 0.066 3.934 7 N -0.319 5.319 8 C 0.017 3.983 9 C -0.385 4.385 10 H 0.086 0.914 11 C -0.195 4.195 12 N -0.552 5.552 13 Si 0.732 3.268 14 H -0.203 1.203 15 H -0.217 1.217 16 H -0.216 1.216 17 C 0.158 3.842 18 N -0.402 5.402 19 N -0.273 5.273 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.139 0.861 24 H 0.164 0.836 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.237 0.763 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -10.227 -6.892 -2.078 12.506 hybrid contribution 0.799 1.081 0.887 1.610 sum -9.428 -5.810 -1.192 11.138 Atomic orbital electron populations 1.20610 0.89843 1.02575 1.02341 1.20667 0.95729 0.87854 0.94880 1.21658 0.95243 0.98224 1.10663 1.21501 0.92867 0.99074 0.90083 1.21595 1.00041 0.91919 1.08008 1.19467 0.86722 0.88516 0.98695 1.43840 1.74179 1.10448 1.03478 1.20829 0.97355 0.95257 0.84904 1.19218 1.17391 1.15181 0.86666 0.91402 1.25028 0.96089 1.00880 0.97490 1.70082 1.21424 1.31996 1.31651 0.86214 0.77413 0.80139 0.82992 1.20279 1.21712 1.21568 1.18163 0.88051 0.86178 0.91797 1.42126 1.09629 1.04596 1.83855 1.66827 1.07762 1.30201 1.22532 0.91116 0.91182 0.91270 0.86111 0.83574 0.93519 0.92689 0.95006 0.98326 0.93934 0.93774 0.76281 0.77624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.17 36.00 0.37 -0.81 16 2 C 0.15 2.42 6.78 -82.61 -0.56 1.86 16 3 C -0.24 -4.06 9.73 -39.42 -0.38 -4.45 16 4 C -0.01 -0.19 9.27 -39.32 -0.36 -0.56 16 5 C -0.21 -4.03 5.91 -104.27 -0.62 -4.65 16 6 C 0.19 3.99 4.86 -5.19 -0.03 3.97 16 7 N -0.60 -14.68 1.74 -182.50 -0.32 -14.99 16 8 C 0.16 3.91 8.43 59.85 0.50 4.42 16 9 C -0.26 -6.89 9.20 -15.06 -0.14 -7.03 16 10 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 11 C 0.00 0.10 5.11 -17.43 -0.09 0.01 16 12 N -0.91 -26.11 10.69 55.49 0.59 -25.52 16 13 Si 0.90 21.75 29.57 -169.99 -5.03 16.72 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 C 0.40 7.03 7.73 -155.01 -1.20 5.83 16 18 N -0.86 -11.90 9.00 31.12 0.28 -11.62 16 19 N -0.55 -9.87 10.31 -8.67 -0.09 -9.96 16 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 22 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 24 H 0.15 3.18 6.37 -52.48 -0.33 2.85 16 25 H 0.05 0.90 8.06 -51.93 -0.42 0.48 16 26 H 0.06 1.12 7.76 -51.93 -0.40 0.71 16 27 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 28 H 0.00 -0.04 8.03 -51.93 -0.42 -0.46 16 29 H 0.04 1.10 7.33 -51.93 -0.38 0.72 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.41 5.09 7.45 -40.82 -0.30 4.79 16 32 H 0.40 4.68 8.95 -40.82 -0.37 4.32 16 LS Contribution 269.71 15.07 4.06 4.06 Total: -1.00 -30.48 269.71 -7.24 -37.72 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.24 Total: 4.99 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.51 Total: -1.41 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.47 Total: -62.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.48 -7.24 -37.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143208133.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.287 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds