Wall clock time and date at job start Sun Mar 29 2020 22:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38059 * 119.57318 * 2 1 4 4 C 1.38843 * 119.32665 * 179.74802 * 3 2 1 5 5 C 1.38342 * 118.50387 * 0.49061 * 4 3 2 6 6 C 1.50701 * 120.44960 * 179.75761 * 5 4 3 7 7 N 1.46501 * 109.46953 * 3.27249 * 6 5 4 8 8 C 1.46503 * 120.00299 * 268.97382 * 7 6 5 9 9 C 1.36939 * 120.00257 * 89.25090 * 7 6 5 10 10 H 1.07998 * 119.99664 * 336.76212 * 9 7 6 11 11 C 1.38810 * 120.00123 * 156.75184 * 9 7 6 12 12 N 1.31622 * 120.00458 * 347.39745 * 11 9 7 13 13 Si 1.86801 * 119.99894 * 167.38902 * 11 9 7 14 14 H 1.48503 * 109.47215 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46820 * 120.00483 * 13 11 9 16 16 H 1.48495 * 109.47651 * 240.00283 * 13 11 9 17 17 C 1.39089 * 119.09919 * 359.49009 * 5 4 3 18 18 N 1.39006 * 119.70299 * 180.25204 * 17 5 4 19 19 N 1.31949 * 119.56889 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.47517 * 270.02181 * 1 2 3 21 21 H 1.09000 * 109.47126 * 30.02443 * 1 2 3 22 22 H 1.09000 * 109.47293 * 150.02229 * 1 2 3 23 23 H 1.08000 * 120.34057 * 0.02562 * 3 2 1 24 24 H 1.08004 * 120.74539 * 180.25518 * 4 3 2 25 25 H 1.09000 * 109.47336 * 243.27325 * 6 5 4 26 26 H 1.08994 * 109.47093 * 123.26675 * 6 5 4 27 27 H 1.09000 * 109.47443 * 265.15662 * 8 7 6 28 28 H 1.08999 * 109.46462 * 25.14732 * 8 7 6 29 29 H 1.08993 * 109.47426 * 145.14968 * 8 7 6 30 30 H 0.97000 * 120.00238 * 179.97438 * 12 11 9 31 31 H 0.96999 * 120.00278 * 5.64268 * 18 17 5 32 32 H 0.97007 * 119.99658 * 185.64798 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2007 0.0000 4 6 3.5767 1.1948 0.0053 5 6 4.2317 -0.0238 0.0001 6 6 5.7376 -0.0814 0.0000 7 7 6.2783 1.2776 0.0849 8 6 6.5727 2.0267 -1.1392 9 6 6.5138 1.8456 1.3084 10 1 5.9829 1.4911 2.1795 11 6 7.4351 2.8769 1.4291 12 7 8.2576 3.1442 0.4369 13 14 7.5076 3.8855 2.9997 14 1 6.4855 3.3878 3.9553 15 1 8.8565 3.7586 3.6077 16 1 7.2387 5.3117 2.6851 17 6 3.4815 -1.1950 0.0005 18 7 4.1267 -2.4262 0.0006 19 7 2.1581 -1.1476 0.0005 20 1 -0.3634 0.0004 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8902 -0.5135 23 1 1.6469 2.1352 0.0004 24 1 4.1328 2.1206 0.0096 25 1 6.0832 -0.5531 -0.9199 26 1 6.0790 -0.6623 0.8567 27 1 7.6241 1.9014 -1.3979 28 1 5.9514 1.6520 -1.9527 29 1 6.3616 3.0837 -0.9780 30 1 8.9011 3.8650 0.5211 31 1 5.0923 -2.4678 0.0829 32 1 3.6112 -3.2439 -0.0818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143208133.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:06 Heat of formation + Delta-G solvation = 37.726616 kcal Electronic energy + Delta-G solvation = -14951.681162 eV Core-core repulsion = 12525.975091 eV Total energy + Delta-G solvation = -2425.706071 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.16895 -37.67476 -35.95449 -34.13067 -32.47056 -31.33215 -29.43266 -27.90104 -26.18427 -23.77961 -23.33657 -21.74983 -18.77614 -18.20155 -17.80312 -16.78192 -16.32861 -15.82996 -15.68646 -15.23755 -14.91880 -14.48488 -14.19833 -13.78085 -13.38420 -13.15855 -12.88450 -12.81959 -12.62802 -12.43799 -12.32014 -12.02044 -11.89767 -11.41043 -10.71213 -10.32420 -10.19424 -8.81189 -8.51293 -7.83705 -5.33431 0.46396 0.68891 1.44655 1.46891 1.56733 2.49573 2.72335 3.05876 3.29849 3.63362 3.80508 4.14330 4.27895 4.44491 4.68031 4.70746 4.72384 4.85628 4.88283 4.94015 4.96384 5.27322 5.29867 5.42433 5.63198 5.69709 5.75479 5.90888 6.32258 6.47688 6.71978 7.14400 7.44392 7.85102 8.29401 9.19418 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034045 B = 0.008023 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.244029 B = 3489.210413 C = 3809.776012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.147 3.853 3 C -0.243 4.243 4 C -0.026 4.026 5 C -0.229 4.229 6 C 0.199 3.801 7 N -0.609 5.609 8 C 0.179 3.821 9 C -0.255 4.255 10 H 0.064 0.936 11 C -0.049 4.049 12 N -0.937 5.937 13 Si 0.964 3.036 14 H -0.270 1.270 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.395 3.605 18 N -0.841 5.841 19 N -0.564 5.564 20 H 0.085 0.915 21 H 0.092 0.908 22 H 0.076 0.924 23 H 0.143 0.857 24 H 0.119 0.881 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.008 0.992 28 H 0.023 0.977 29 H 0.018 0.982 30 H 0.249 0.751 31 H 0.414 0.586 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.706 -7.220 -1.667 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.010 3.990 3 C -0.265 4.265 4 C -0.052 4.052 5 C -0.238 4.238 6 C 0.072 3.928 7 N -0.331 5.331 8 C 0.034 3.966 9 C -0.386 4.386 10 H 0.081 0.919 11 C -0.244 4.244 12 N -0.583 5.583 13 Si 0.792 3.208 14 H -0.195 1.195 15 H -0.218 1.218 16 H -0.217 1.217 17 C 0.157 3.843 18 N -0.387 5.387 19 N -0.284 5.284 20 H 0.103 0.897 21 H 0.110 0.890 22 H 0.095 0.905 23 H 0.161 0.839 24 H 0.137 0.863 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.245 0.755 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -12.046 -7.842 -1.685 14.472 hybrid contribution 1.267 1.277 0.737 1.944 sum -10.779 -6.566 -0.948 12.657 Atomic orbital electron populations 1.20720 0.86513 1.04092 1.03691 1.21396 0.97888 0.87157 0.92571 1.21864 0.94225 0.99757 1.10674 1.21394 0.94188 0.98147 0.91481 1.21358 0.99103 0.92801 1.10549 1.19509 0.87461 0.86458 0.99328 1.43967 1.74317 1.12125 1.02729 1.20538 0.96270 0.94109 0.85709 1.19393 1.16588 1.15165 0.87411 0.91866 1.25719 0.96197 1.02124 1.00330 1.70225 1.22214 1.32531 1.33376 0.85253 0.77225 0.78443 0.79831 1.19498 1.21803 1.21672 1.18262 0.88252 0.86716 0.91103 1.42081 1.10112 1.03968 1.82517 1.67012 1.07469 1.30738 1.23146 0.89656 0.88952 0.90525 0.83934 0.86279 0.92214 0.92703 0.97398 0.95825 0.96333 0.94203 0.75480 0.76165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 10.17 71.23 0.72 -1.21 16 2 C 0.15 4.51 6.78 42.50 0.29 4.79 16 3 C -0.24 -7.99 9.73 22.37 0.22 -7.78 16 4 C -0.03 -1.04 9.27 22.44 0.21 -0.83 16 5 C -0.23 -8.77 5.91 -19.63 -0.12 -8.89 16 6 C 0.20 8.11 4.86 85.63 0.42 8.53 16 7 N -0.61 -30.22 1.74 -731.32 -1.27 -31.50 16 8 C 0.18 8.85 8.43 127.77 1.08 9.93 16 9 C -0.26 -13.94 9.20 84.03 0.77 -13.16 16 10 H 0.06 3.45 7.86 -2.91 -0.02 3.43 16 11 C -0.05 -2.70 5.11 84.86 0.43 -2.27 16 12 N -0.94 -55.05 10.69 21.65 0.23 -54.82 16 13 Si 0.96 45.16 29.57 68.60 2.03 47.19 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 15 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 16 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 17 C 0.40 13.36 7.73 133.04 1.03 14.39 16 18 N -0.84 -21.59 9.00 -55.45 -0.50 -22.09 16 19 N -0.56 -18.77 10.31 -181.34 -1.87 -20.64 16 20 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.09 1.53 8.08 -2.39 -0.02 1.51 16 22 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 24 H 0.12 5.30 6.37 -2.91 -0.02 5.28 16 25 H 0.06 2.24 8.06 -2.39 -0.02 2.22 16 26 H 0.05 2.20 7.76 -2.39 -0.02 2.18 16 27 H 0.01 0.42 7.34 -2.39 -0.02 0.40 16 28 H 0.02 1.02 8.03 -2.39 -0.02 1.00 16 29 H 0.02 0.97 7.33 -2.39 -0.02 0.95 16 30 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.41 9.57 7.45 -92.71 -0.69 8.87 16 32 H 0.41 8.63 8.95 -92.70 -0.83 7.80 16 Total: -1.00 -64.83 269.71 3.29 -61.55 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.39 Total: 16.81 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.05 Total: 3.50 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -3.41 Total: -129.05 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -64.83 3.29 -61.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143208133.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.274 kcal (2) G-P(sol) polarization free energy of solvation -64.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds