Wall clock time and date at job start Sun Mar 29 2020 21:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38755 * 120.02759 * 2 1 4 4 O 1.35903 * 120.05945 * 0.03964 * 3 2 1 5 5 C 1.38708 * 119.88847 * 180.25293 * 3 2 1 6 6 C 1.38167 * 119.94589 * 359.76873 * 5 3 2 7 7 C 1.38251 * 120.05251 * 0.02562 * 6 5 3 8 8 C 1.38119 * 120.02718 * 179.78654 * 2 1 3 9 9 C 1.50700 * 119.97479 * 0.02562 * 8 2 1 10 10 N 1.46501 * 109.47178 * 279.81858 * 9 8 2 11 11 C 1.46501 * 119.99621 * 274.07839 * 10 9 8 12 12 C 1.36930 * 120.00096 * 93.79731 * 10 9 8 13 13 H 1.07997 * 120.00433 * 354.36215 * 12 10 9 14 14 C 1.38817 * 119.99887 * 174.36041 * 12 10 9 15 15 N 1.31624 * 120.00012 * 351.42830 * 14 12 10 16 16 Si 1.86803 * 119.99975 * 171.42634 * 14 12 10 17 17 H 1.48492 * 109.47361 * 90.00390 * 16 14 12 18 18 H 1.48505 * 109.46704 * 210.00321 * 16 14 12 19 19 H 1.48500 * 109.46989 * 329.99967 * 16 14 12 20 20 H 1.08998 * 109.47327 * 272.93233 * 1 2 3 21 21 H 1.09006 * 109.47100 * 32.93409 * 1 2 3 22 22 H 1.08999 * 109.47065 * 152.92858 * 1 2 3 23 23 H 0.96694 * 114.00110 * 270.21481 * 4 3 2 24 24 H 1.08001 * 120.03087 * 179.74730 * 5 3 2 25 25 H 1.07994 * 119.97469 * 180.02562 * 6 5 3 26 26 H 1.07995 * 119.94689 * 179.97438 * 7 6 5 27 27 H 1.08997 * 109.47215 * 159.81179 * 9 8 2 28 28 H 1.09007 * 109.47212 * 39.81206 * 9 8 2 29 29 H 1.09008 * 109.46775 * 243.80582 * 11 10 9 30 30 H 1.09005 * 109.47012 * 3.79836 * 11 10 9 31 31 H 1.08993 * 109.47090 * 123.80585 * 11 10 9 32 32 H 0.96999 * 119.99711 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2013 0.0000 4 8 1.5236 2.3793 0.0008 5 6 3.5884 1.1980 -0.0053 6 6 4.2752 -0.0009 -0.0057 7 6 3.5811 -1.1965 -0.0014 8 6 2.1982 -1.1958 0.0045 9 6 1.4447 -2.5009 0.0087 10 7 0.9960 -2.8013 1.3706 11 6 1.8897 -3.4979 2.2993 12 6 -0.2564 -2.4260 1.7773 13 1 -0.8793 -1.8297 1.1271 14 6 -0.7256 -2.8119 3.0255 15 7 -0.0421 -3.6743 3.7477 16 14 -2.3271 -2.1074 3.6801 17 1 -3.4571 -2.9754 3.2623 18 1 -2.2715 -2.0466 5.1629 19 1 -2.5254 -0.7401 3.1357 20 1 -0.3634 0.0526 1.0263 21 1 -0.3634 0.8626 -0.5587 22 1 -0.3633 -0.9151 -0.4677 23 1 1.3241 2.7189 -0.8823 24 1 4.1312 2.1317 -0.0094 25 1 5.3552 -0.0041 -0.0095 26 1 4.1196 -2.1326 -0.0022 27 1 2.0985 -3.2990 -0.3429 28 1 0.5796 -2.4232 -0.6499 29 1 1.4589 -4.4641 2.5623 30 1 2.8596 -3.6495 1.8254 31 1 2.0154 -2.8986 3.2009 32 1 -0.3698 -3.9436 4.6200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144118546.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:17 Heat of formation + Delta-G solvation = 10.142760 kcal Electronic energy + Delta-G solvation = -15256.922864 eV Core-core repulsion = 12797.727916 eV Total energy + Delta-G solvation = -2459.194948 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.54651 -36.75901 -35.22554 -32.43962 -31.13244 -29.46945 -26.68357 -26.13061 -25.08119 -21.86451 -21.35776 -19.90701 -17.68566 -16.75372 -15.67133 -15.41464 -14.93889 -14.59773 -13.71056 -13.38434 -13.03596 -12.73019 -12.51911 -11.95541 -11.89733 -11.47308 -11.31414 -11.07146 -10.82199 -10.70615 -10.69689 -10.20043 -10.05632 -9.81381 -9.56198 -8.52513 -8.13368 -8.02871 -6.88319 -5.59306 -3.03220 1.72342 1.84202 3.40846 3.47409 3.48520 4.08675 4.53361 4.58963 5.29856 5.31713 5.46771 5.59273 5.68485 5.80346 5.89763 6.04484 6.19877 6.26957 6.43327 6.46965 6.63483 6.78224 6.81936 6.88125 6.95256 7.24579 7.34026 7.63008 7.76925 7.96634 8.00498 8.41019 9.29445 9.92288 10.35199 11.39100 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030242 B = 0.010091 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.657540 B = 2774.084814 C = 3351.570464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.085 4.085 3 C 0.090 3.910 4 O -0.497 6.497 5 C -0.159 4.159 6 C -0.118 4.118 7 C -0.122 4.122 8 C -0.072 4.072 9 C 0.183 3.817 10 N -0.599 5.599 11 C 0.167 3.833 12 C -0.247 4.247 13 H 0.084 0.916 14 C -0.007 4.007 15 N -0.916 5.916 16 Si 0.903 3.097 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.280 1.280 20 H 0.085 0.915 21 H 0.047 0.953 22 H 0.071 0.929 23 H 0.379 0.621 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.057 0.943 30 H -0.008 1.008 31 H 0.027 0.973 32 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.253 6.674 -9.360 12.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.086 4.086 3 C 0.046 3.954 4 O -0.306 6.306 5 C -0.178 4.178 6 C -0.137 4.137 7 C -0.141 4.141 8 C -0.076 4.076 9 C 0.055 3.945 10 N -0.320 5.320 11 C 0.023 3.977 12 C -0.376 4.376 13 H 0.101 0.899 14 C -0.203 4.203 15 N -0.564 5.564 16 Si 0.733 3.267 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.206 1.206 20 H 0.103 0.897 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.233 0.767 24 H 0.135 0.865 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.011 0.989 31 H 0.046 0.954 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.212 6.500 -8.537 11.929 hybrid contribution -0.694 0.628 0.170 0.951 sum 4.518 7.128 -8.367 11.884 Atomic orbital electron populations 1.20888 0.90819 1.01150 1.03402 1.20065 0.96873 0.91759 0.99886 1.18337 0.89736 0.84659 1.02703 1.84857 1.76812 1.36323 1.32612 1.21166 0.93412 0.98284 1.04943 1.20860 0.99150 0.92232 1.01422 1.21029 0.93957 0.97612 1.01525 1.21062 0.93786 0.97349 0.95417 1.19817 0.96094 0.90120 0.88451 1.44050 1.13585 1.66435 1.07960 1.21059 0.87920 0.97874 0.90892 1.19557 0.91043 1.26979 1.00038 0.89866 1.24852 0.98587 0.99090 0.97798 1.70181 1.38940 1.34538 1.12752 0.86262 0.83296 0.78795 0.78314 1.21589 1.21680 1.20584 0.89681 0.93378 0.91004 0.76710 0.86511 0.86585 0.86523 0.93597 0.92120 0.92430 0.98940 0.95409 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 7.76 36.01 0.28 -1.68 16 2 C -0.08 -1.60 5.89 -104.47 -0.62 -2.22 16 3 C 0.09 1.55 6.68 -39.22 -0.26 1.29 16 4 O -0.50 -7.66 12.60 -19.43 -0.24 -7.90 16 5 C -0.16 -2.51 9.99 -39.43 -0.39 -2.90 16 6 C -0.12 -1.83 10.04 -39.60 -0.40 -2.23 16 7 C -0.12 -2.10 9.67 -39.56 -0.38 -2.48 16 8 C -0.07 -1.39 5.46 -104.65 -0.57 -1.96 16 9 C 0.18 3.74 5.28 -5.19 -0.03 3.71 16 10 N -0.60 -15.04 2.92 -182.50 -0.53 -15.57 16 11 C 0.17 4.25 9.00 59.85 0.54 4.78 16 12 C -0.25 -6.66 8.64 -15.06 -0.13 -6.79 16 13 H 0.08 2.11 4.89 -52.49 -0.26 1.86 16 14 C -0.01 -0.20 5.39 -17.43 -0.09 -0.30 16 15 N -0.92 -26.93 9.63 55.49 0.53 -26.40 16 16 Si 0.90 22.19 29.56 -169.99 -5.03 17.17 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H 0.08 1.82 7.00 -51.93 -0.36 1.45 16 21 H 0.05 0.75 7.63 -51.93 -0.40 0.35 16 22 H 0.07 1.32 5.06 -51.93 -0.26 1.05 16 23 H 0.38 3.79 9.06 45.56 0.41 4.20 16 24 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 25 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 26 H 0.12 1.82 8.03 -52.49 -0.42 1.39 16 27 H 0.05 0.86 7.90 -51.93 -0.41 0.45 16 28 H 0.06 1.19 6.25 -51.93 -0.32 0.87 16 29 H 0.06 1.59 6.70 -51.92 -0.35 1.24 16 30 H -0.01 -0.18 7.88 -51.93 -0.41 -0.59 16 31 H 0.03 0.77 7.44 -51.93 -0.39 0.38 16 32 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 262.08 15.07 3.95 3.95 Total: -1.00 -31.17 262.08 -6.52 -37.69 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -3.15 Total: 1.83 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.06 Total: -10.76 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.00 Total: -41.97 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.24 Total: -7.90 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.17 -6.52 -37.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144118546.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.837 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds