Wall clock time and date at job start Sun Mar 29 2020 21:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38755 * 120.02759 * 2 1 4 4 O 1.35903 * 120.05945 * 0.03964 * 3 2 1 5 5 C 1.38708 * 119.88847 * 180.25293 * 3 2 1 6 6 C 1.38167 * 119.94589 * 359.76873 * 5 3 2 7 7 C 1.38251 * 120.05251 * 0.02562 * 6 5 3 8 8 C 1.38119 * 120.02718 * 179.78654 * 2 1 3 9 9 C 1.50700 * 119.97479 * 0.02562 * 8 2 1 10 10 N 1.46501 * 109.47178 * 279.81858 * 9 8 2 11 11 C 1.46501 * 119.99621 * 274.07839 * 10 9 8 12 12 C 1.36930 * 120.00096 * 93.79731 * 10 9 8 13 13 H 1.07997 * 120.00433 * 354.36215 * 12 10 9 14 14 C 1.38817 * 119.99887 * 174.36041 * 12 10 9 15 15 N 1.31624 * 120.00012 * 351.42830 * 14 12 10 16 16 Si 1.86803 * 119.99975 * 171.42634 * 14 12 10 17 17 H 1.48492 * 109.47361 * 90.00390 * 16 14 12 18 18 H 1.48505 * 109.46704 * 210.00321 * 16 14 12 19 19 H 1.48500 * 109.46989 * 329.99967 * 16 14 12 20 20 H 1.08998 * 109.47327 * 272.93233 * 1 2 3 21 21 H 1.09006 * 109.47100 * 32.93409 * 1 2 3 22 22 H 1.08999 * 109.47065 * 152.92858 * 1 2 3 23 23 H 0.96694 * 114.00110 * 270.21481 * 4 3 2 24 24 H 1.08001 * 120.03087 * 179.74730 * 5 3 2 25 25 H 1.07994 * 119.97469 * 180.02562 * 6 5 3 26 26 H 1.07995 * 119.94689 * 179.97438 * 7 6 5 27 27 H 1.08997 * 109.47215 * 159.81179 * 9 8 2 28 28 H 1.09007 * 109.47212 * 39.81206 * 9 8 2 29 29 H 1.09008 * 109.46775 * 243.80582 * 11 10 9 30 30 H 1.09005 * 109.47012 * 3.79836 * 11 10 9 31 31 H 1.08993 * 109.47090 * 123.80585 * 11 10 9 32 32 H 0.96999 * 119.99711 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2013 0.0000 4 8 1.5236 2.3793 0.0008 5 6 3.5884 1.1980 -0.0053 6 6 4.2752 -0.0009 -0.0057 7 6 3.5811 -1.1965 -0.0014 8 6 2.1982 -1.1958 0.0045 9 6 1.4447 -2.5009 0.0087 10 7 0.9960 -2.8013 1.3706 11 6 1.8897 -3.4979 2.2993 12 6 -0.2564 -2.4260 1.7773 13 1 -0.8793 -1.8297 1.1271 14 6 -0.7256 -2.8119 3.0255 15 7 -0.0421 -3.6743 3.7477 16 14 -2.3271 -2.1074 3.6801 17 1 -3.4571 -2.9754 3.2623 18 1 -2.2715 -2.0466 5.1629 19 1 -2.5254 -0.7401 3.1357 20 1 -0.3634 0.0526 1.0263 21 1 -0.3634 0.8626 -0.5587 22 1 -0.3633 -0.9151 -0.4677 23 1 1.3241 2.7189 -0.8823 24 1 4.1312 2.1317 -0.0094 25 1 5.3552 -0.0041 -0.0095 26 1 4.1196 -2.1326 -0.0022 27 1 2.0985 -3.2990 -0.3429 28 1 0.5796 -2.4232 -0.6499 29 1 1.4589 -4.4641 2.5623 30 1 2.8596 -3.6495 1.8254 31 1 2.0154 -2.8986 3.2009 32 1 -0.3698 -3.9436 4.6200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144118546.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:17 Heat of formation + Delta-G solvation = -10.274700 kcal Electronic energy + Delta-G solvation = -15257.808232 eV Core-core repulsion = 12797.727916 eV Total energy + Delta-G solvation = -2460.080316 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.85863 -38.19288 -36.88671 -34.01758 -32.85707 -31.00425 -28.25074 -27.96354 -26.76178 -23.59781 -22.73772 -21.40881 -19.05212 -18.62528 -17.16040 -16.78766 -16.64723 -15.93537 -15.49353 -15.01603 -14.86286 -14.21125 -14.00292 -13.50843 -13.35836 -13.07222 -12.98245 -12.69625 -12.69345 -12.49018 -12.19316 -12.07258 -11.74888 -11.55569 -11.24074 -10.60544 -9.49865 -9.33782 -8.90257 -7.69321 -5.14312 0.43822 0.52160 1.44685 1.46793 1.54329 2.51668 2.82302 3.35490 3.41886 3.87057 4.05891 4.07724 4.23830 4.36805 4.51188 4.73310 4.76559 4.84985 4.89334 5.02885 5.05023 5.16328 5.41240 5.51974 5.54419 5.64212 5.68396 5.86301 5.88686 6.08789 6.34276 6.94400 7.20605 7.92479 8.31228 9.28038 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030242 B = 0.010091 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.657540 B = 2774.084814 C = 3351.570464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.112 4.112 3 C 0.087 3.913 4 O -0.506 6.506 5 C -0.158 4.158 6 C -0.111 4.111 7 C -0.131 4.131 8 C -0.092 4.092 9 C 0.182 3.818 10 N -0.615 5.615 11 C 0.184 3.816 12 C -0.240 4.240 13 H 0.094 0.906 14 C -0.070 4.070 15 N -0.949 5.949 16 Si 0.960 3.040 17 H -0.284 1.284 18 H -0.300 1.300 19 H -0.271 1.271 20 H 0.050 0.950 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.403 0.597 24 H 0.144 0.856 25 H 0.151 0.849 26 H 0.131 0.869 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.024 0.976 31 H -0.007 1.007 32 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 8.266 -10.811 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C 0.042 3.958 4 O -0.319 6.319 5 C -0.176 4.176 6 C -0.129 4.129 7 C -0.150 4.150 8 C -0.095 4.095 9 C 0.056 3.944 10 N -0.337 5.337 11 C 0.040 3.960 12 C -0.370 4.370 13 H 0.112 0.888 14 C -0.263 4.263 15 N -0.599 5.599 16 Si 0.789 3.211 17 H -0.211 1.211 18 H -0.227 1.227 19 H -0.196 1.196 20 H 0.069 0.931 21 H 0.092 0.908 22 H 0.084 0.916 23 H 0.261 0.739 24 H 0.162 0.838 25 H 0.169 0.831 26 H 0.149 0.851 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.012 0.988 32 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.258 8.126 -10.059 14.366 hybrid contribution -0.925 0.233 0.478 1.066 sum 5.333 8.360 -9.581 13.789 Atomic orbital electron populations 1.20733 0.91188 1.02076 1.01476 1.20224 0.96968 0.92653 1.01480 1.18465 0.90534 0.84620 1.02156 1.84790 1.76726 1.35455 1.34883 1.21536 0.92922 0.99706 1.03468 1.21253 1.00927 0.91315 0.99441 1.21268 0.93244 0.99195 1.01292 1.20870 0.94762 0.96421 0.97478 1.19941 0.96805 0.91595 0.86059 1.44259 1.13199 1.66714 1.09546 1.20689 0.89263 0.95842 0.90239 1.19966 0.91852 1.25318 0.99834 0.88797 1.25594 1.01742 1.00259 0.98660 1.70382 1.40479 1.36359 1.12719 0.85353 0.80265 0.78541 0.76951 1.21074 1.22699 1.19601 0.93117 0.90811 0.91581 0.73894 0.83788 0.83116 0.85146 0.91922 0.91800 0.95152 0.95776 0.98810 0.94966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.55 7.76 71.24 0.55 -3.00 16 2 C -0.11 -4.08 5.89 -19.77 -0.12 -4.19 16 3 C 0.09 2.77 6.68 22.51 0.15 2.92 16 4 O -0.51 -14.16 12.60 -92.45 -1.17 -15.33 16 5 C -0.16 -4.39 9.99 22.37 0.22 -4.16 16 6 C -0.11 -3.01 10.04 22.26 0.22 -2.79 16 7 C -0.13 -4.15 9.67 22.29 0.22 -3.93 16 8 C -0.09 -3.40 5.46 -19.88 -0.11 -3.51 16 9 C 0.18 7.27 5.28 85.63 0.45 7.72 16 10 N -0.61 -30.94 2.92 -731.29 -2.13 -33.07 16 11 C 0.18 9.51 9.00 127.77 1.15 10.66 16 12 C -0.24 -13.03 8.64 84.04 0.73 -12.30 16 13 H 0.09 4.78 4.89 -2.91 -0.01 4.77 16 14 C -0.07 -4.02 5.39 84.86 0.46 -3.57 16 15 N -0.95 -57.52 9.63 21.65 0.21 -57.31 16 16 Si 0.96 46.44 29.56 68.60 2.03 48.47 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H 0.05 2.16 7.00 -2.39 -0.02 2.14 16 21 H 0.07 2.18 7.63 -2.38 -0.02 2.16 16 22 H 0.07 2.39 5.06 -2.39 -0.01 2.37 16 23 H 0.40 6.76 9.06 -74.06 -0.67 6.09 16 24 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 25 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 26 H 0.13 3.67 8.03 -2.91 -0.02 3.64 16 27 H 0.06 2.26 7.90 -2.39 -0.02 2.24 16 28 H 0.06 2.47 6.25 -2.38 -0.01 2.46 16 29 H 0.03 1.71 6.70 -2.38 -0.02 1.70 16 30 H 0.02 1.05 7.88 -2.38 -0.02 1.03 16 31 H -0.01 -0.39 7.44 -2.39 -0.02 -0.41 16 32 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -67.44 262.08 3.32 -64.11 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.46 Total: 9.28 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 3.92 Total: -16.15 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -1.92 Total: -90.38 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -1.17 Total: -15.33 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -67.44 3.32 -64.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144118546.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.839 kcal (2) G-P(sol) polarization free energy of solvation -67.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds