Wall clock time and date at job start Sun Mar 29 2020 22:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47285 * 2 1 4 4 C 1.52997 * 109.47035 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47101 * 179.97438 * 4 3 2 6 6 C 1.38833 * 120.00244 * 180.02562 * 5 4 3 7 7 C 1.39954 * 119.96695 * 359.97438 * 6 5 4 8 8 N 1.32135 * 120.31843 * 179.97438 * 7 6 5 9 9 C 1.31932 * 120.26736 * 0.02950 * 8 7 6 10 10 C 1.40678 * 119.93720 * 359.97438 * 9 8 7 11 11 C 1.41266 * 120.15974 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00035 * 6.13012 * 11 10 9 13 13 C 1.40054 * 120.00528 * 185.86063 * 11 10 9 14 14 N 1.30730 * 119.99675 * 353.97179 * 13 11 10 15 15 Si 1.86800 * 120.00450 * 173.97005 * 13 11 10 16 16 H 1.48501 * 109.46840 * 89.99733 * 15 13 11 17 17 H 1.48497 * 109.47080 * 209.99831 * 15 13 11 18 18 H 1.48498 * 109.46912 * 330.00039 * 15 13 11 19 19 N 1.32234 * 119.96716 * 180.30650 * 6 5 4 20 20 H 1.08995 * 109.46943 * 300.00376 * 1 2 3 21 21 H 1.08993 * 109.46660 * 60.00108 * 1 2 3 22 22 H 1.09000 * 109.47045 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47197 * 239.99285 * 2 1 3 24 24 H 1.09006 * 109.47243 * 119.99694 * 2 1 3 25 25 H 1.08994 * 109.46956 * 59.99701 * 3 2 1 26 26 H 1.09001 * 109.46559 * 299.99566 * 3 2 1 27 27 H 1.09009 * 109.47135 * 59.99662 * 4 3 2 28 28 H 1.08998 * 109.47498 * 299.99882 * 4 3 2 29 29 H 0.97005 * 120.00217 * 359.97438 * 5 4 3 30 30 H 1.07998 * 119.84426 * 0.02758 * 7 6 5 31 31 H 1.07997 * 120.02951 * 180.02562 * 9 8 7 32 32 H 0.97005 * 120.00089 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 5.4234 3.0773 -0.0001 7 6 6.3322 2.0130 0.0009 8 7 7.6328 2.2465 0.0003 9 6 8.0860 3.4855 -0.0007 10 6 7.1822 4.5636 -0.0016 11 6 7.6623 5.8922 -0.0021 12 1 8.7205 6.0840 -0.1017 13 6 6.7656 6.9610 0.1208 14 7 5.4776 6.7372 0.1174 15 14 7.4099 8.7062 0.2896 16 1 7.5596 9.3111 -1.0584 17 1 6.4532 9.5117 1.0902 18 1 8.7290 8.6830 0.9711 19 7 5.8634 4.3242 0.0055 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 1.6767 1.9563 0.8899 26 1 1.6768 1.9562 -0.8901 27 1 3.9338 0.9284 -0.8891 28 1 3.9331 0.9288 0.8908 29 1 3.4281 3.5610 -0.0011 30 1 5.9689 0.9960 0.0014 31 1 9.1497 3.6719 -0.0016 32 1 4.8564 7.4774 0.2021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154827980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:17 Heat of formation + Delta-G solvation = 24.425039 kcal Electronic energy + Delta-G solvation = -14381.606728 eV Core-core repulsion = 11955.323857 eV Total energy + Delta-G solvation = -2426.282871 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.86770 -36.44452 -34.13121 -33.69919 -31.54531 -29.73514 -27.59202 -25.79203 -23.30433 -22.37015 -20.98132 -20.81532 -17.44368 -16.46615 -15.64705 -15.27977 -14.87116 -14.83320 -13.89629 -13.80562 -13.59443 -12.96642 -12.78136 -12.32893 -11.60485 -11.49718 -11.34404 -11.29403 -11.08608 -10.89599 -10.66363 -10.63651 -10.34357 -9.81294 -9.57440 -9.34669 -8.31033 -7.35408 -6.66290 -6.41759 -4.62925 2.73856 3.05634 3.08362 3.15416 3.31368 3.89355 4.09344 4.74798 4.93497 4.95004 5.08224 5.41397 5.57932 5.68962 5.76775 5.87210 5.95872 5.98257 6.06744 6.13972 6.31359 6.33340 6.38592 6.58020 6.84446 7.07026 7.17616 7.64595 8.00304 8.09302 8.49339 8.59455 8.90203 9.45493 10.04444 10.21964 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036096 B = 0.006336 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.530575 B = 4417.874299 C = 5160.441066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.130 4.130 4 C 0.138 3.862 5 N -0.733 5.733 6 C 0.372 3.628 7 C -0.170 4.170 8 N -0.408 5.408 9 C -0.109 4.109 10 C 0.246 3.754 11 C -0.418 4.418 12 H 0.090 0.910 13 C 0.068 3.932 14 N -0.711 5.711 15 Si 0.910 3.090 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.259 1.259 19 N -0.510 5.510 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.395 0.605 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.885 -4.969 0.089 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.168 4.168 4 C 0.013 3.987 5 N -0.370 5.370 6 C 0.129 3.871 7 C -0.332 4.332 8 N -0.120 5.120 9 C -0.279 4.279 10 C 0.118 3.882 11 C -0.451 4.451 12 H 0.108 0.892 13 C -0.158 4.158 14 N -0.332 5.332 15 Si 0.734 3.266 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.183 1.183 19 N -0.237 5.237 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.230 0.770 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.113 -5.120 0.111 9.594 hybrid contribution -0.083 1.071 0.077 1.077 sum -8.195 -4.049 0.188 9.143 Atomic orbital electron populations 1.21764 0.95886 1.01401 1.01835 1.21436 0.95741 0.96416 1.02305 1.21788 0.95079 0.97268 1.02660 1.21127 0.92856 0.84122 1.00643 1.44144 1.03515 1.06079 1.83310 1.19534 0.85042 0.92145 0.90399 1.21926 0.89344 0.96891 1.24999 1.67503 1.14906 1.23847 1.05724 1.22897 0.99234 0.88699 1.17075 1.19095 0.86997 0.94051 0.88095 1.19617 0.95033 0.89104 1.41303 0.89186 1.26131 0.94607 1.01509 0.93563 1.70118 1.02411 1.32868 1.27783 0.86276 0.80005 0.81073 0.79224 1.19321 1.20103 1.18308 1.69047 1.15193 1.15511 1.23912 0.92774 0.92765 0.92872 0.91790 0.91794 0.91498 0.91490 0.92966 0.92963 0.77002 0.86274 0.85289 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.21 5.93 -26.73 -0.16 -1.37 16 3 C -0.13 -1.57 5.33 -26.73 -0.14 -1.72 16 4 C 0.14 2.15 4.90 -4.05 -0.02 2.13 16 5 N -0.73 -14.82 5.72 -60.28 -0.34 -15.16 16 6 C 0.37 9.35 7.66 -155.02 -1.19 8.16 16 7 C -0.17 -4.23 10.50 -16.78 -0.18 -4.40 16 8 N -0.41 -10.75 10.47 -12.11 -0.13 -10.88 16 9 C -0.11 -2.90 10.97 -16.59 -0.18 -3.08 16 10 C 0.25 6.90 6.54 -84.83 -0.55 6.35 16 11 C -0.42 -11.11 9.15 -37.75 -0.35 -11.46 16 12 H 0.09 2.20 7.86 -52.48 -0.41 1.79 16 13 C 0.07 1.71 5.49 -17.34 -0.10 1.61 16 14 N -0.71 -18.62 11.51 55.55 0.64 -17.98 16 15 Si 0.91 18.23 29.56 -169.99 -5.03 13.20 16 16 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 17 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 19 N -0.51 -14.28 8.09 -10.14 -0.08 -14.36 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.81 7.93 -51.92 -0.41 0.40 16 28 H 0.05 0.82 7.93 -51.93 -0.41 0.40 16 29 H 0.40 7.84 8.60 -40.82 -0.35 7.49 16 30 H 0.12 2.63 6.70 -52.49 -0.35 2.28 16 31 H 0.13 3.12 8.06 -52.49 -0.42 2.69 16 32 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -30.21 275.42 -7.74 -37.94 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.46 Total: 7.82 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.49 Total: -4.74 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.09 Total: -58.38 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.21 -7.74 -37.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154827980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.369 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds