Wall clock time and date at job start Sun Mar 29 2020 22:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47285 * 2 1 4 4 C 1.52997 * 109.47035 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47101 * 179.97438 * 4 3 2 6 6 C 1.38833 * 120.00244 * 180.02562 * 5 4 3 7 7 C 1.39954 * 119.96695 * 359.97438 * 6 5 4 8 8 N 1.32135 * 120.31843 * 179.97438 * 7 6 5 9 9 C 1.31932 * 120.26736 * 0.02950 * 8 7 6 10 10 C 1.40678 * 119.93720 * 359.97438 * 9 8 7 11 11 C 1.41266 * 120.15974 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00035 * 6.13012 * 11 10 9 13 13 C 1.40054 * 120.00528 * 185.86063 * 11 10 9 14 14 N 1.30730 * 119.99675 * 353.97179 * 13 11 10 15 15 Si 1.86800 * 120.00450 * 173.97005 * 13 11 10 16 16 H 1.48501 * 109.46840 * 89.99733 * 15 13 11 17 17 H 1.48497 * 109.47080 * 209.99831 * 15 13 11 18 18 H 1.48498 * 109.46912 * 330.00039 * 15 13 11 19 19 N 1.32234 * 119.96716 * 180.30650 * 6 5 4 20 20 H 1.08995 * 109.46943 * 300.00376 * 1 2 3 21 21 H 1.08993 * 109.46660 * 60.00108 * 1 2 3 22 22 H 1.09000 * 109.47045 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47197 * 239.99285 * 2 1 3 24 24 H 1.09006 * 109.47243 * 119.99694 * 2 1 3 25 25 H 1.08994 * 109.46956 * 59.99701 * 3 2 1 26 26 H 1.09001 * 109.46559 * 299.99566 * 3 2 1 27 27 H 1.09009 * 109.47135 * 59.99662 * 4 3 2 28 28 H 1.08998 * 109.47498 * 299.99882 * 4 3 2 29 29 H 0.97005 * 120.00217 * 359.97438 * 5 4 3 30 30 H 1.07998 * 119.84426 * 0.02758 * 7 6 5 31 31 H 1.07997 * 120.02951 * 180.02562 * 9 8 7 32 32 H 0.97005 * 120.00089 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 5.4234 3.0773 -0.0001 7 6 6.3322 2.0130 0.0009 8 7 7.6328 2.2465 0.0003 9 6 8.0860 3.4855 -0.0007 10 6 7.1822 4.5636 -0.0016 11 6 7.6623 5.8922 -0.0021 12 1 8.7205 6.0840 -0.1017 13 6 6.7656 6.9610 0.1208 14 7 5.4776 6.7372 0.1174 15 14 7.4099 8.7062 0.2896 16 1 7.5596 9.3111 -1.0584 17 1 6.4532 9.5117 1.0902 18 1 8.7290 8.6830 0.9711 19 7 5.8634 4.3242 0.0055 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 1.6767 1.9563 0.8899 26 1 1.6768 1.9562 -0.8901 27 1 3.9338 0.9284 -0.8891 28 1 3.9331 0.9288 0.8908 29 1 3.4281 3.5610 -0.0011 30 1 5.9689 0.9960 0.0014 31 1 9.1497 3.6719 -0.0016 32 1 4.8564 7.4774 0.2021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154827980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:16 Heat of formation + Delta-G solvation = 5.288165 kcal Electronic energy + Delta-G solvation = -14382.436565 eV Core-core repulsion = 11955.323857 eV Total energy + Delta-G solvation = -2427.112708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.79747 -37.79031 -35.86627 -35.20226 -33.42117 -31.38303 -28.96826 -27.74389 -24.64558 -24.18533 -22.62298 -21.96246 -19.37256 -18.27897 -17.15446 -16.73572 -16.66585 -16.53857 -15.48273 -15.21794 -14.86643 -14.32254 -14.30752 -13.49635 -13.27338 -13.05635 -12.95514 -12.62764 -12.54204 -12.06487 -11.96297 -11.84942 -11.73437 -11.52590 -11.37608 -11.27538 -10.22445 -9.33002 -8.48178 -8.33206 -6.64442 0.84087 1.25155 1.42838 1.54890 1.60034 2.21800 2.53274 2.83470 3.89269 3.91253 4.05632 4.20239 4.20830 4.45380 4.49500 4.54334 4.65934 4.73452 4.92944 4.97106 4.97660 5.09694 5.15662 5.21859 5.27344 5.38532 5.47801 5.72423 6.09790 6.24652 6.64944 6.70477 7.00756 7.45765 8.07860 8.35401 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036096 B = 0.006336 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.530575 B = 4417.874299 C = 5160.441066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.120 4.120 4 C 0.134 3.866 5 N -0.725 5.725 6 C 0.363 3.637 7 C -0.178 4.178 8 N -0.417 5.417 9 C -0.135 4.135 10 C 0.215 3.785 11 C -0.442 4.442 12 H 0.102 0.898 13 C 0.023 3.977 14 N -0.744 5.744 15 Si 0.995 3.005 16 H -0.260 1.260 17 H -0.268 1.268 18 H -0.252 1.252 19 N -0.542 5.542 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.396 0.604 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.642 -4.646 0.193 9.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.158 4.158 4 C 0.010 3.990 5 N -0.360 5.360 6 C 0.118 3.882 7 C -0.341 4.341 8 N -0.129 5.129 9 C -0.303 4.303 10 C 0.087 3.913 11 C -0.475 4.475 12 H 0.120 0.880 13 C -0.200 4.200 14 N -0.365 5.365 15 Si 0.814 3.186 16 H -0.185 1.185 17 H -0.193 1.193 18 H -0.176 1.176 19 N -0.270 5.270 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.231 0.769 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.888 -4.837 0.212 10.122 hybrid contribution 0.060 0.884 0.036 0.887 sum -8.828 -3.953 0.248 9.676 Atomic orbital electron populations 1.21751 0.94751 1.02281 1.01956 1.21427 0.96669 0.94720 1.02771 1.21730 0.92297 0.98971 1.02774 1.21410 0.95211 0.81579 1.00823 1.44364 1.01722 1.08104 1.81831 1.19893 0.87042 0.91610 0.89673 1.22346 0.89049 0.98103 1.24581 1.67504 1.15742 1.23786 1.05854 1.23076 0.99871 0.88735 1.18654 1.19550 0.87628 0.95223 0.88912 1.20073 0.96150 0.89526 1.41703 0.88009 1.27125 0.94540 1.05931 0.92447 1.70198 1.03860 1.34837 1.27650 0.85017 0.79468 0.74617 0.79489 1.18480 1.19277 1.17583 1.69058 1.15451 1.16961 1.25507 0.92682 0.92663 0.91649 0.91350 0.91369 0.91410 0.91377 0.92653 0.92675 0.76930 0.83679 0.83962 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 71.98 0.71 -1.57 16 2 C -0.12 -2.09 5.93 30.60 0.18 -1.91 16 3 C -0.12 -2.69 5.33 30.59 0.16 -2.53 16 4 C 0.13 3.98 4.90 86.38 0.42 4.40 16 5 N -0.72 -29.00 5.72 -344.63 -1.97 -30.97 16 6 C 0.36 18.35 7.66 133.37 1.02 19.37 16 7 C -0.18 -8.85 10.50 85.06 0.89 -7.96 16 8 N -0.42 -22.13 10.47 -192.24 -2.01 -24.15 16 9 C -0.13 -7.29 10.97 85.27 0.94 -6.36 16 10 C 0.21 12.31 6.54 40.15 0.26 12.57 16 11 C -0.44 -23.77 9.15 23.46 0.21 -23.56 16 12 H 0.10 5.00 7.86 -2.91 -0.02 4.98 16 13 C 0.02 1.14 5.49 85.30 0.47 1.61 16 14 N -0.74 -39.15 11.51 21.84 0.25 -38.90 16 15 Si 0.99 36.73 29.56 68.60 2.03 38.76 16 16 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 17 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 18 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 19 N -0.54 -30.89 8.09 -186.00 -1.51 -32.40 16 20 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 21 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.64 7.93 -2.38 -0.02 1.62 16 28 H 0.06 1.64 7.93 -2.39 -0.02 1.62 16 29 H 0.40 15.66 8.60 -92.70 -0.80 14.86 16 30 H 0.15 6.24 6.70 -2.91 -0.02 6.22 16 31 H 0.14 7.02 8.06 -2.91 -0.02 7.00 16 32 H 0.28 13.29 8.29 -92.70 -0.77 12.52 16 Total: -1.00 -64.95 275.42 2.38 -62.56 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.32 Total: 31.01 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 5.28 Total: -5.91 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -5.24 Total: -126.42 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -64.95 2.38 -62.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154827980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.853 kcal (2) G-P(sol) polarization free energy of solvation -64.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds