Wall clock time and date at job start Sun Mar 29 2020 22:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 C 1.38682 * 120.40525 * 74.71766 * 5 2 1 7 7 C 1.38647 * 118.55371 * 179.76253 * 6 5 2 8 8 N 1.32245 * 119.19519 * 0.51251 * 7 6 5 9 9 C 1.32526 * 120.74468 * 359.75280 * 8 7 6 10 10 N 1.38434 * 119.21538 * 179.97438 * 9 8 7 11 11 C 1.36990 * 120.00054 * 359.97438 * 10 9 8 12 12 H 1.08000 * 119.99763 * 359.97438 * 11 10 9 13 13 C 1.38834 * 120.00221 * 179.97438 * 11 10 9 14 14 N 1.31535 * 120.00250 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99578 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47024 * 90.00302 * 15 13 11 17 17 H 1.48503 * 109.46781 * 209.99632 * 15 13 11 18 18 H 1.48496 * 109.47333 * 329.99891 * 15 13 11 19 19 N 1.32221 * 120.39982 * 254.99953 * 5 2 1 20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 23 23 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 24 24 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 25 25 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 26 26 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 27 27 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 29 29 H 1.07998 * 120.72614 * 0.02562 * 6 5 2 30 30 H 1.07996 * 120.39729 * 180.23815 * 7 6 5 31 31 H 0.96996 * 120.00326 * 179.97438 * 10 9 8 32 32 H 0.97001 * 120.00221 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0324 -0.7103 -1.2305 6 6 1.9691 -0.0943 -2.4714 7 6 2.4468 -0.7809 -3.5772 8 7 2.9360 -1.9992 -3.4182 9 6 2.9771 -2.5617 -2.2189 10 7 3.4953 -3.8387 -2.0889 11 6 3.9575 -4.5060 -3.1924 12 1 3.9172 -4.0359 -4.1639 13 6 4.4778 -5.7866 -3.0620 14 7 4.9220 -6.4271 -4.1215 15 14 4.5468 -6.5999 -1.3817 16 1 3.2900 -7.3547 -1.1452 17 1 5.7013 -7.5324 -1.3303 18 1 4.7039 -5.5593 -0.3341 19 7 2.5337 -1.9305 -1.1410 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6766 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6767 -1.7490 1.2492 27 1 3.1301 -0.7209 1.2493 28 1 1.6767 -0.2075 2.1392 29 1 1.5607 0.9002 -2.5737 30 1 2.4156 -0.3280 -4.5571 31 1 3.5312 -4.2611 -1.2165 32 1 5.2852 -7.3219 -4.0304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533664.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:35 Heat of formation + Delta-G solvation = 27.089503 kcal Electronic energy + Delta-G solvation = -14867.491062 eV Core-core repulsion = 12441.323731 eV Total energy + Delta-G solvation = -2426.167331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.69346 -38.33876 -36.77699 -34.21887 -33.55038 -31.08488 -28.17260 -28.05873 -26.70721 -25.15730 -23.57435 -20.68169 -20.30256 -18.24084 -17.71187 -16.65836 -16.30258 -15.93564 -15.45810 -15.02484 -14.81323 -14.71077 -14.41921 -14.10774 -13.34242 -13.03980 -12.88628 -12.53675 -12.50282 -12.20441 -12.12709 -12.05808 -11.89594 -11.87170 -11.25433 -11.22092 -10.78891 -9.66090 -9.23805 -8.47359 -5.89665 0.51588 0.61919 1.25151 1.30307 1.34240 2.14350 2.48282 2.83458 3.38819 3.41492 3.77762 4.06376 4.15970 4.30994 4.35451 4.68034 4.76408 4.84704 4.86957 4.94286 4.97535 5.07247 5.08615 5.26784 5.32413 5.46797 5.49603 5.56465 5.69501 6.06318 6.48370 6.63051 6.98980 7.26265 7.89156 8.68172 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039196 B = 0.007822 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.184700 B = 3578.710849 C = 4101.836654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.020 4.020 3 C -0.131 4.131 4 C -0.124 4.124 5 C 0.216 3.784 6 C -0.325 4.325 7 C 0.177 3.823 8 N -0.610 5.610 9 C 0.507 3.493 10 N -0.559 5.559 11 C -0.298 4.298 12 H 0.088 0.912 13 C -0.011 4.011 14 N -0.922 5.922 15 Si 0.950 3.050 16 H -0.260 1.260 17 H -0.266 1.266 18 H -0.253 1.253 19 N -0.605 5.605 20 H 0.067 0.933 21 H 0.036 0.964 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.166 0.834 30 H 0.183 0.817 31 H 0.393 0.607 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 14.153 10.223 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.022 4.022 3 C -0.188 4.188 4 C -0.181 4.181 5 C 0.066 3.934 6 C -0.353 4.353 7 C 0.009 3.991 8 N -0.336 5.336 9 C 0.152 3.848 10 N -0.179 5.179 11 C -0.428 4.428 12 H 0.106 0.894 13 C -0.211 4.211 14 N -0.562 5.562 15 Si 0.772 3.228 16 H -0.185 1.185 17 H -0.191 1.191 18 H -0.178 1.178 19 N -0.330 5.330 20 H 0.086 0.914 21 H 0.056 0.944 22 H 0.107 0.893 23 H 0.104 0.896 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.184 0.816 30 H 0.200 0.800 31 H 0.229 0.771 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.131 12.766 10.055 17.746 hybrid contribution 0.144 -0.364 0.200 0.440 sum -6.987 12.403 10.255 17.544 Atomic orbital electron populations 1.21805 0.91584 1.01550 1.03697 1.19683 0.96889 0.95529 0.90050 1.21862 1.00553 0.92536 1.03870 1.21636 1.00128 0.99994 0.96344 1.21807 0.87729 0.87852 0.96008 1.22260 1.14450 1.05079 0.93514 1.23389 0.87529 0.87738 1.00484 1.67950 1.25847 1.14655 1.25170 1.19299 0.92164 0.87713 0.85631 1.40482 1.57337 1.10721 1.09328 1.19243 1.36930 0.98185 0.88443 0.89426 1.25781 0.96622 0.96535 1.02154 1.69785 1.41345 1.14108 1.30952 0.85546 0.79461 0.79328 0.78510 1.18510 1.19054 1.17796 1.67615 1.21698 1.12506 1.31230 0.91373 0.94443 0.89278 0.89559 0.93770 0.90763 0.93846 0.94398 0.90232 0.81610 0.80048 0.77069 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 8.41 71.98 0.61 -1.98 16 2 C -0.02 -0.50 0.88 -52.93 -0.05 -0.55 16 3 C -0.13 -2.39 8.10 71.98 0.58 -1.81 16 4 C -0.12 -3.15 7.83 71.98 0.56 -2.59 16 5 C 0.22 7.41 5.57 42.61 0.24 7.65 16 6 C -0.32 -10.09 9.20 22.47 0.21 -9.89 16 7 C 0.18 6.50 11.30 84.73 0.96 7.46 16 8 N -0.61 -29.60 9.10 -197.89 -1.80 -31.40 16 9 C 0.51 25.22 8.38 261.43 2.19 27.41 16 10 N -0.56 -29.43 5.23 -194.34 -1.02 -30.45 16 11 C -0.30 -17.53 10.17 84.03 0.85 -16.67 16 12 H 0.09 5.77 7.28 -2.91 -0.02 5.75 16 13 C -0.01 -0.61 5.50 84.88 0.47 -0.15 16 14 N -0.92 -55.26 13.96 21.65 0.30 -54.96 16 15 Si 0.95 42.06 27.74 68.60 1.90 43.96 16 16 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.25 -10.55 6.52 99.48 0.65 -9.90 16 19 N -0.60 -26.04 9.21 -185.93 -1.71 -27.75 16 20 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 21 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 1.16 6.79 -2.39 -0.02 1.15 16 26 H 0.04 1.28 7.88 -2.39 -0.02 1.26 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.17 3.67 6.85 -2.91 -0.02 3.65 16 30 H 0.18 5.15 8.06 -2.91 -0.02 5.13 16 31 H 0.39 19.20 5.87 -92.71 -0.54 18.66 16 32 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -69.26 269.33 4.81 -64.46 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.51 Total: 27.25 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 6.62 Total: 8.88 kcal Atomic # 7 Polarization: -140.33 SS G_CDS: -4.23 Total: -144.55 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.90 Total: 43.96 kcal Total: -69.26 4.81 -64.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533664.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.548 kcal (2) G-P(sol) polarization free energy of solvation -69.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds