Wall clock time and date at job start Sun Mar 29 2020 21:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 120.00614 * 2 1 4 4 O 1.21608 * 119.99719 * 0.02562 * 3 2 1 5 5 C 1.47447 * 120.00309 * 179.97438 * 3 2 1 6 6 C 1.39962 * 120.61261 * 5.68548 * 5 3 2 7 7 C 1.38343 * 118.37029 * 180.23950 * 6 5 3 8 8 C 1.38463 * 119.51142 * 359.50042 * 7 6 5 9 9 N 1.31776 * 121.22066 * 0.28600 * 8 7 6 10 10 C 1.32493 * 121.77961 * 359.96721 * 9 8 7 11 11 N 1.38222 * 119.83245 * 179.97438 * 10 9 8 12 12 C 1.36888 * 119.99764 * 354.53638 * 11 10 9 13 13 H 1.08002 * 120.00154 * 359.97438 * 12 11 10 14 14 C 1.38871 * 120.00302 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99895 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00469 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47099 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47148 * 120.00141 * 16 14 12 19 19 H 1.48497 * 109.47572 * 240.00017 * 16 14 12 20 20 H 1.08993 * 109.47589 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46964 * 300.00250 * 1 2 3 22 22 H 1.09000 * 109.46617 * 59.99968 * 1 2 3 23 23 H 0.97001 * 119.99687 * 179.97438 * 2 1 3 24 24 H 1.08001 * 120.81546 * 0.02562 * 6 5 3 25 25 H 1.08005 * 120.24709 * 179.78397 * 7 6 5 26 26 H 1.08003 * 119.38582 * 180.25709 * 8 7 6 27 27 H 0.96994 * 120.00339 * 174.54068 * 11 10 9 28 28 H 0.96993 * 120.00564 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5310 2.2203 0.0005 5 6 3.6135 1.1670 0.0006 6 6 4.3262 -0.0317 -0.1182 7 6 5.7086 0.0216 -0.1073 8 6 6.3430 1.2468 0.0091 9 7 5.6543 2.3653 0.1154 10 6 4.3294 2.3716 0.1155 11 7 3.6475 3.5684 0.2298 12 6 4.3363 4.7298 0.4547 13 1 5.4126 4.7109 0.5431 14 6 3.6514 5.9324 0.5690 15 7 2.3408 5.9555 0.4618 16 14 4.5912 7.5171 0.8766 17 1 6.0445 7.2230 0.9574 18 1 4.3400 8.4659 -0.2379 19 1 4.1365 8.1225 2.1540 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 1.9500 -0.8401 0.0004 24 1 3.8097 -0.9754 -0.2126 25 1 6.2887 -0.8853 -0.1934 26 1 7.4223 1.2865 0.0132 27 1 2.6809 3.5854 0.1508 28 1 1.8623 6.7953 0.5420 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534051.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:21 Heat of formation + Delta-G solvation = 7.516162 kcal Electronic energy + Delta-G solvation = -14646.612748 eV Core-core repulsion = 12083.763559 eV Total energy + Delta-G solvation = -2562.849189 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.63865 -37.90952 -35.41010 -33.95869 -32.03036 -31.42998 -28.81140 -26.46810 -24.72143 -23.19756 -21.28484 -20.16802 -17.77999 -17.34876 -16.67861 -15.62619 -14.81558 -14.63965 -14.36913 -14.13161 -13.41413 -13.24328 -13.14757 -12.26099 -12.23706 -11.89753 -11.76952 -11.43210 -11.34191 -10.52631 -10.39971 -10.37527 -9.20366 -8.99598 -8.77558 -8.64130 -8.23348 -7.03442 -6.66805 -3.79346 1.83256 2.50330 3.15099 3.16096 3.22601 3.76051 3.80206 3.99890 4.72591 5.01465 5.30383 5.31637 5.52271 5.62340 5.77440 5.84907 6.03949 6.18809 6.51538 6.63687 6.87902 6.92736 7.12269 7.29455 7.56686 7.91490 8.03331 8.63402 8.90048 9.00988 9.29655 9.82291 10.45348 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.026861 B = 0.010077 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.148650 B = 2778.053683 C = 3799.933759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.745 5.745 3 C 0.566 3.434 4 O -0.551 6.551 5 C -0.329 4.329 6 C 0.020 3.980 7 C -0.329 4.329 8 C 0.184 3.816 9 N -0.540 5.540 10 C 0.357 3.643 11 N -0.478 5.478 12 C -0.289 4.289 13 H 0.117 0.883 14 C 0.020 3.980 15 N -0.859 5.859 16 Si 0.941 3.059 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.277 1.277 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.396 0.604 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.137 0.863 27 H 0.429 0.571 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.671 -9.996 -0.496 10.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.397 5.397 3 C 0.359 3.641 4 O -0.430 6.430 5 C -0.343 4.343 6 C -0.006 4.006 7 C -0.356 4.356 8 C 0.010 3.990 9 N -0.257 5.257 10 C 0.108 3.892 11 N -0.087 5.087 12 C -0.421 4.421 13 H 0.135 0.865 14 C -0.187 4.187 15 N -0.492 5.492 16 Si 0.766 3.234 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.203 1.203 20 H 0.085 0.915 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.229 0.771 24 H 0.127 0.873 25 H 0.129 0.871 26 H 0.154 0.846 27 H 0.279 0.721 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.215 -7.825 -0.358 7.836 hybrid contribution -0.280 -0.592 0.001 0.654 sum -0.065 -8.417 -0.357 8.425 Atomic orbital electron populations 1.21401 0.80507 1.01130 1.02103 1.45566 1.06922 1.08641 1.78593 1.18248 0.87381 0.83079 0.75362 1.90500 1.69803 1.30550 1.52183 1.19268 0.91410 0.94229 1.29433 1.20978 0.94192 0.95082 0.90365 1.21039 0.94374 0.98483 1.21682 1.22278 0.98662 0.87658 0.90381 1.67191 1.06607 1.30232 1.21665 1.17895 0.87762 0.85353 0.98140 1.42216 1.11813 1.02864 1.51850 1.20311 0.94622 0.83956 1.43192 0.86484 1.25673 0.95824 1.00602 0.96613 1.69786 1.06772 1.28851 1.43819 0.85623 0.79795 0.79805 0.78158 1.18555 1.20257 1.20276 0.91458 0.92628 0.92671 0.77060 0.87318 0.87123 0.84567 0.72098 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 10.70 59.85 0.64 1.90 15 2 N -0.74 -11.91 5.67 -68.17 -0.39 -12.29 15 3 C 0.57 12.29 7.75 -12.51 -0.10 12.19 15 4 O -0.55 -14.26 13.68 5.27 0.07 -14.19 15 5 C -0.33 -7.29 5.91 -104.61 -0.62 -7.91 15 6 C 0.02 0.35 9.63 -38.90 -0.37 -0.02 15 7 C -0.33 -5.70 10.09 -39.46 -0.40 -6.10 15 8 C 0.18 3.55 11.17 -17.49 -0.20 3.36 15 9 N -0.54 -12.93 9.08 -12.17 -0.11 -13.04 15 10 C 0.36 9.15 7.44 -155.14 -1.15 7.99 15 11 N -0.48 -13.51 5.29 -10.95 -0.06 -13.57 15 12 C -0.29 -8.13 9.70 -15.06 -0.15 -8.27 15 13 H 0.12 3.24 7.09 -52.49 -0.37 2.87 15 14 C 0.02 0.54 5.50 -17.45 -0.10 0.45 15 15 N -0.86 -24.43 13.05 55.49 0.72 -23.71 15 16 Si 0.94 20.52 29.55 -169.99 -5.02 15.49 15 17 H -0.26 -5.56 7.11 56.52 0.40 -5.16 15 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 20 H 0.07 0.63 8.14 -51.93 -0.42 0.20 15 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.40 4.99 6.96 -40.82 -0.28 4.70 15 24 H 0.11 1.47 6.55 -52.49 -0.34 1.13 15 25 H 0.11 1.55 8.06 -52.48 -0.42 1.12 15 26 H 0.14 2.11 8.06 -52.48 -0.42 1.69 15 27 H 0.43 12.65 4.40 -40.92 -0.18 12.47 15 28 H 0.28 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 249.37 15.07 3.76 3.76 Total: -1.00 -32.38 249.37 -5.89 -38.27 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -2.43 Total: 15.68 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -2.44 Total: 3.59 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: 0.17 Total: -62.60 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.07 Total: -14.19 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.38 -5.89 -38.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534051.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.788 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds