Wall clock time and date at job start Sun Mar 29 2020 21:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 120.00614 * 2 1 4 4 O 1.21608 * 119.99719 * 0.02562 * 3 2 1 5 5 C 1.47447 * 120.00309 * 179.97438 * 3 2 1 6 6 C 1.39962 * 120.61261 * 5.68548 * 5 3 2 7 7 C 1.38343 * 118.37029 * 180.23950 * 6 5 3 8 8 C 1.38463 * 119.51142 * 359.50042 * 7 6 5 9 9 N 1.31776 * 121.22066 * 0.28600 * 8 7 6 10 10 C 1.32493 * 121.77961 * 359.96721 * 9 8 7 11 11 N 1.38222 * 119.83245 * 179.97438 * 10 9 8 12 12 C 1.36888 * 119.99764 * 354.53638 * 11 10 9 13 13 H 1.08002 * 120.00154 * 359.97438 * 12 11 10 14 14 C 1.38871 * 120.00302 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99895 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00469 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47099 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47148 * 120.00141 * 16 14 12 19 19 H 1.48497 * 109.47572 * 240.00017 * 16 14 12 20 20 H 1.08993 * 109.47589 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46964 * 300.00250 * 1 2 3 22 22 H 1.09000 * 109.46617 * 59.99968 * 1 2 3 23 23 H 0.97001 * 119.99687 * 179.97438 * 2 1 3 24 24 H 1.08001 * 120.81546 * 0.02562 * 6 5 3 25 25 H 1.08005 * 120.24709 * 179.78397 * 7 6 5 26 26 H 1.08003 * 119.38582 * 180.25709 * 8 7 6 27 27 H 0.96994 * 120.00339 * 174.54068 * 11 10 9 28 28 H 0.96993 * 120.00564 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5310 2.2203 0.0005 5 6 3.6135 1.1670 0.0006 6 6 4.3262 -0.0317 -0.1182 7 6 5.7086 0.0216 -0.1073 8 6 6.3430 1.2468 0.0091 9 7 5.6543 2.3653 0.1154 10 6 4.3294 2.3716 0.1155 11 7 3.6475 3.5684 0.2298 12 6 4.3363 4.7298 0.4547 13 1 5.4126 4.7109 0.5431 14 6 3.6514 5.9324 0.5690 15 7 2.3408 5.9555 0.4618 16 14 4.5912 7.5171 0.8766 17 1 6.0445 7.2230 0.9574 18 1 4.3400 8.4659 -0.2379 19 1 4.1365 8.1225 2.1540 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 1.9500 -0.8401 0.0004 24 1 3.8097 -0.9754 -0.2126 25 1 6.2887 -0.8853 -0.1934 26 1 7.4223 1.2865 0.0132 27 1 2.6809 3.5854 0.1508 28 1 1.8623 6.7953 0.5420 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534051.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:21 Heat of formation + Delta-G solvation = -17.355826 kcal Electronic energy + Delta-G solvation = -14647.691279 eV Core-core repulsion = 12083.763559 eV Total energy + Delta-G solvation = -2563.927720 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.34429 -39.59826 -37.16931 -35.53687 -33.86713 -33.07572 -30.52155 -27.88252 -26.55310 -24.77962 -22.98732 -21.78093 -19.65167 -18.90957 -18.33620 -17.28998 -16.57359 -16.20805 -16.04397 -15.62346 -15.12161 -14.89955 -14.82304 -13.78757 -13.73058 -13.45942 -13.09191 -13.07776 -13.01423 -12.45778 -12.12355 -12.06892 -10.92358 -10.75667 -10.53425 -10.08233 -9.92258 -8.81023 -8.55112 -5.82579 0.20339 0.88348 1.36680 1.46865 1.54990 2.10241 2.23765 2.40556 2.90063 3.26337 3.50019 3.99152 4.12378 4.31754 4.49623 4.61721 4.63088 4.84768 4.95258 5.08364 5.32924 5.34584 5.50176 5.55192 5.80166 6.20087 6.64706 6.72956 7.14732 7.35943 7.48427 7.95895 8.61147 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.026861 B = 0.010077 C = 0.007367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.148650 B = 2778.053683 C = 3799.933759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.719 5.719 3 C 0.557 3.443 4 O -0.599 6.599 5 C -0.346 4.346 6 C 0.025 3.975 7 C -0.295 4.295 8 C 0.174 3.826 9 N -0.584 5.584 10 C 0.356 3.644 11 N -0.531 5.531 12 C -0.319 4.319 13 H 0.108 0.892 14 C -0.034 4.034 15 N -0.918 5.918 16 Si 1.013 2.987 17 H -0.256 1.256 18 H -0.272 1.272 19 H -0.272 1.272 20 H 0.122 0.878 21 H 0.041 0.959 22 H 0.043 0.957 23 H 0.416 0.584 24 H 0.164 0.836 25 H 0.165 0.835 26 H 0.177 0.823 27 H 0.417 0.583 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.227 -13.958 -0.721 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.372 5.372 3 C 0.350 3.650 4 O -0.482 6.482 5 C -0.360 4.360 6 C 0.000 4.000 7 C -0.320 4.320 8 C 0.005 3.995 9 N -0.303 5.303 10 C 0.111 3.889 11 N -0.146 5.146 12 C -0.450 4.450 13 H 0.125 0.875 14 C -0.234 4.234 15 N -0.555 5.555 16 Si 0.834 3.166 17 H -0.179 1.179 18 H -0.197 1.197 19 H -0.197 1.197 20 H 0.140 0.860 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.254 0.746 24 H 0.182 0.818 25 H 0.183 0.817 26 H 0.194 0.806 27 H 0.265 0.735 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.863 -11.935 -0.589 12.094 hybrid contribution -0.599 -0.024 0.001 0.599 sum 1.265 -11.959 -0.588 12.040 Atomic orbital electron populations 1.21644 0.78684 1.04321 1.00934 1.45373 1.08071 1.07678 1.76058 1.18440 0.87607 0.83890 0.75111 1.90503 1.70624 1.32811 1.54283 1.19713 0.92296 0.94842 1.29135 1.21590 0.94719 0.95468 0.88262 1.21735 0.94540 0.99534 1.16192 1.23182 1.00639 0.87438 0.88218 1.67250 1.06260 1.32981 1.23840 1.18659 0.88949 0.86027 0.95306 1.42205 1.11239 1.03700 1.57436 1.20344 0.94223 0.85099 1.45346 0.87463 1.26608 0.96648 1.03586 0.96589 1.69910 1.08364 1.29322 1.47902 0.84591 0.78420 0.75484 0.78101 1.17933 1.19694 1.19686 0.85952 0.94042 0.93784 0.74609 0.81818 0.81742 0.80645 0.73489 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.16 10.70 127.77 1.37 3.53 15 2 N -0.72 -20.87 5.67 -487.86 -2.76 -23.64 15 3 C 0.56 23.94 7.75 86.67 0.67 24.61 15 4 O -0.60 -32.43 13.68 -4.05 -0.06 -32.48 15 5 C -0.35 -14.82 5.91 -19.86 -0.12 -14.94 15 6 C 0.03 0.77 9.63 22.71 0.22 0.99 15 7 C -0.30 -8.34 10.09 22.35 0.23 -8.11 15 8 C 0.17 6.05 11.17 84.75 0.95 7.00 15 9 N -0.58 -27.74 9.08 -192.42 -1.75 -29.49 15 10 C 0.36 18.58 7.44 133.66 0.99 19.57 15 11 N -0.53 -31.94 5.29 -188.57 -1.00 -32.93 15 12 C -0.32 -19.23 9.70 84.06 0.82 -18.41 15 13 H 0.11 6.34 7.09 -2.91 -0.02 6.32 15 14 C -0.03 -1.98 5.50 84.89 0.47 -1.51 15 15 N -0.92 -56.37 13.05 21.66 0.28 -56.09 15 16 Si 1.01 44.72 29.55 68.60 2.03 46.75 15 17 H -0.26 -10.76 7.11 99.48 0.71 -10.05 15 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 20 H 0.12 1.69 8.14 -2.39 -0.02 1.67 15 21 H 0.04 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.04 1.21 8.14 -2.39 -0.02 1.19 15 23 H 0.42 8.31 6.96 -92.71 -0.65 7.67 15 24 H 0.16 3.16 6.55 -2.91 -0.02 3.14 15 25 H 0.17 3.08 8.06 -2.91 -0.02 3.06 15 26 H 0.18 4.59 8.06 -2.91 -0.02 4.57 15 27 H 0.42 26.50 4.40 -94.20 -0.41 26.09 15 28 H 0.28 15.76 8.31 -92.71 -0.77 14.99 15 Total: -1.00 -79.53 249.37 2.48 -77.05 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: 0.15 Total: 38.12 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.59 Total: 12.71 kcal Atomic # 7 Polarization: -136.92 SS G_CDS: -5.23 Total: -142.14 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.06 Total: -32.48 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -79.53 2.48 -77.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534051.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.689 kcal (2) G-P(sol) polarization free energy of solvation -79.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds