Wall clock time and date at job start Sun Mar 29 2020 21:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34769 * 120.00426 * 2 1 4 4 O 1.21521 * 119.99722 * 359.97438 * 3 2 1 5 5 C 1.48148 * 120.00279 * 180.02562 * 3 2 1 6 6 C 1.40030 * 120.87843 * 359.97238 * 5 3 2 7 7 C 1.38045 * 119.18578 * 180.02562 * 6 5 3 8 8 N 1.31850 * 121.00388 * 359.73651 * 7 6 5 9 9 C 1.32436 * 121.94337 * 0.53892 * 8 7 6 10 10 N 1.38832 * 119.65258 * 179.75187 * 9 8 7 11 11 C 1.36881 * 120.00237 * 179.72210 * 10 9 8 12 12 H 1.08002 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.38840 * 120.00027 * 179.71883 * 11 10 9 14 14 N 1.31554 * 119.99784 * 0.27473 * 13 11 10 15 15 Si 1.86803 * 119.99929 * 180.27655 * 13 11 10 16 16 H 1.48496 * 109.47141 * 59.99745 * 15 13 11 17 17 H 1.48497 * 109.46782 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46993 * 300.00022 * 15 13 11 19 19 C 1.39199 * 120.69874 * 359.46177 * 9 8 7 20 20 H 1.09000 * 109.47003 * 59.99754 * 1 2 3 21 21 H 1.08999 * 109.46866 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46598 * 300.00131 * 1 2 3 23 23 H 0.97003 * 119.99416 * 180.02562 * 2 1 3 24 24 H 1.08000 * 120.41076 * 0.02562 * 6 5 3 25 25 H 1.07993 * 119.50210 * 179.97438 * 7 6 5 26 26 H 0.97000 * 120.00212 * 359.71511 * 10 9 8 27 27 H 0.97005 * 119.99679 * 179.97438 * 14 13 11 28 28 H 1.07999 * 120.53771 * 180.27760 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5314 2.2195 -0.0005 5 6 3.6205 1.1670 -0.0006 6 6 4.3391 -0.0348 -0.0005 7 6 5.7190 0.0060 -0.0005 8 7 6.3645 1.1556 -0.0058 9 6 5.7276 2.3168 -0.0007 10 7 6.4552 3.4992 -0.0013 11 6 5.8043 4.7034 -0.0018 12 1 4.7247 4.7337 -0.0021 13 6 6.5320 5.8858 0.0034 14 7 7.8470 5.8489 0.0034 15 14 5.6436 7.5291 0.0106 16 1 4.7923 7.6263 1.2234 17 1 6.6399 8.6302 0.0148 18 1 4.7925 7.6369 -1.2016 19 6 4.3365 2.3643 -0.0007 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 1.9500 -0.8401 -0.0004 24 1 3.8203 -0.9820 -0.0005 25 1 6.2783 -0.9179 -0.0001 26 1 7.4248 3.4721 -0.0014 27 1 8.3553 6.6750 0.0066 28 1 3.8198 3.3127 -0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534696.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:28 Heat of formation + Delta-G solvation = 3.971277 kcal Electronic energy + Delta-G solvation = -14235.851891 eV Core-core repulsion = 11672.848984 eV Total energy + Delta-G solvation = -2563.002907 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.76244 -38.41131 -35.35574 -34.40778 -32.14987 -31.54047 -28.52345 -26.97340 -24.96899 -23.23588 -21.78398 -20.12577 -17.99879 -17.92266 -16.02886 -15.54467 -15.11374 -14.95639 -14.56149 -14.43401 -13.52480 -13.33275 -13.17440 -12.95160 -12.66416 -12.29685 -11.79307 -11.35225 -11.08622 -10.48011 -10.43423 -10.33510 -9.77846 -9.12949 -8.93147 -8.77197 -8.46802 -7.09091 -6.70367 -3.89997 1.64184 2.26987 3.13542 3.13798 3.16911 3.42193 3.52063 3.95108 4.64848 4.80176 5.06036 5.17904 5.29652 5.51381 5.53227 5.77595 5.88408 6.19833 6.32411 6.53642 6.61889 6.84605 6.95266 7.23850 7.42336 7.71149 7.77033 8.49011 8.52168 8.85637 9.19945 9.57146 10.45065 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.031204 B = 0.007796 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.110710 B = 3590.794935 C = 4472.758328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.735 5.735 3 C 0.562 3.438 4 O -0.538 6.538 5 C -0.053 4.053 6 C -0.293 4.293 7 C 0.161 3.839 8 N -0.569 5.569 9 C 0.353 3.647 10 N -0.520 5.520 11 C -0.305 4.305 12 H 0.108 0.892 13 C 0.027 3.973 14 N -0.879 5.879 15 Si 0.937 3.063 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.269 1.269 19 C -0.187 4.187 20 H 0.057 0.943 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.403 0.597 24 H 0.110 0.890 25 H 0.139 0.861 26 H 0.406 0.594 27 H 0.279 0.721 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 -9.697 0.018 12.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.388 5.388 3 C 0.350 3.650 4 O -0.415 6.415 5 C -0.063 4.063 6 C -0.321 4.321 7 C -0.002 4.002 8 N -0.291 5.291 9 C 0.109 3.891 10 N -0.125 5.125 11 C -0.436 4.436 12 H 0.125 0.875 13 C -0.179 4.179 14 N -0.515 5.515 15 Si 0.763 3.237 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.194 1.194 19 C -0.216 4.216 20 H 0.076 0.924 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.238 0.762 24 H 0.128 0.872 25 H 0.157 0.843 26 H 0.242 0.758 27 H 0.089 0.911 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.703 -8.349 0.012 11.360 hybrid contribution -0.629 0.280 0.009 0.689 sum -8.332 -8.069 0.020 11.598 Atomic orbital electron populations 1.21490 0.79980 1.01787 1.02220 1.45698 1.07328 1.08998 1.76759 1.18611 0.87809 0.83271 0.75314 1.90731 1.70211 1.31373 1.49178 1.19625 0.91074 0.94502 1.01106 1.21147 0.95428 0.96005 1.19564 1.21901 0.91035 0.94487 0.92746 1.66957 1.40801 0.97362 1.24009 1.18180 0.88068 0.86345 0.96515 1.40857 1.08701 1.01320 1.61616 1.19826 0.93610 0.81838 1.48308 0.87451 1.25396 0.95629 1.00359 0.96479 1.69690 1.05259 1.30077 1.46442 0.85796 0.78746 0.79641 0.79546 1.19364 1.20532 1.19366 1.21294 0.93096 0.98089 1.09092 0.92388 0.90911 0.92394 0.76218 0.87164 0.84329 0.75810 0.91062 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 10.70 59.85 0.64 1.59 15 2 N -0.73 -9.76 5.67 -67.94 -0.39 -10.15 15 3 C 0.56 10.37 7.80 -12.19 -0.10 10.27 15 4 O -0.54 -11.77 16.44 5.35 0.09 -11.68 15 5 C -0.05 -1.05 5.90 -104.69 -0.62 -1.67 15 6 C -0.29 -4.97 9.61 -38.98 -0.37 -5.34 15 7 C 0.16 2.93 11.17 -17.61 -0.20 2.73 15 8 N -0.57 -12.65 10.37 -12.48 -0.13 -12.78 15 9 C 0.35 8.49 7.61 -155.13 -1.18 7.31 15 10 N -0.52 -13.38 5.44 -11.17 -0.06 -13.44 15 11 C -0.31 -7.99 9.54 -15.07 -0.14 -8.14 15 12 H 0.11 2.74 5.65 -52.49 -0.30 2.44 15 13 C 0.03 0.69 5.50 -17.45 -0.10 0.60 15 14 N -0.88 -23.41 13.05 55.49 0.72 -22.68 15 15 Si 0.94 19.97 29.55 -169.99 -5.02 14.95 15 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 19 C -0.19 -4.31 8.90 -38.75 -0.34 -4.65 15 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.07 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.40 4.21 6.97 -40.82 -0.28 3.93 15 24 H 0.11 1.40 6.53 -52.49 -0.34 1.06 15 25 H 0.14 1.97 8.06 -52.49 -0.42 1.55 15 26 H 0.41 10.69 8.01 -40.82 -0.33 10.37 15 27 H 0.28 6.98 8.31 -40.82 -0.34 6.64 15 28 H 0.14 3.26 5.62 -52.49 -0.29 2.97 15 LS Contribution 252.15 15.07 3.80 3.80 Total: -1.00 -30.02 252.15 -5.77 -35.79 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -2.37 Total: 13.49 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -2.41 Total: 2.71 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.15 Total: -59.05 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.02 -5.77 -35.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534696.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.759 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds