Wall clock time and date at job start Sun Mar 29 2020 21:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34769 * 120.00426 * 2 1 4 4 O 1.21521 * 119.99722 * 359.97438 * 3 2 1 5 5 C 1.48148 * 120.00279 * 180.02562 * 3 2 1 6 6 C 1.40030 * 120.87843 * 359.97238 * 5 3 2 7 7 C 1.38045 * 119.18578 * 180.02562 * 6 5 3 8 8 N 1.31850 * 121.00388 * 359.73651 * 7 6 5 9 9 C 1.32436 * 121.94337 * 0.53892 * 8 7 6 10 10 N 1.38832 * 119.65258 * 179.75187 * 9 8 7 11 11 C 1.36881 * 120.00237 * 179.72210 * 10 9 8 12 12 H 1.08002 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.38840 * 120.00027 * 179.71883 * 11 10 9 14 14 N 1.31554 * 119.99784 * 0.27473 * 13 11 10 15 15 Si 1.86803 * 119.99929 * 180.27655 * 13 11 10 16 16 H 1.48496 * 109.47141 * 59.99745 * 15 13 11 17 17 H 1.48497 * 109.46782 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46993 * 300.00022 * 15 13 11 19 19 C 1.39199 * 120.69874 * 359.46177 * 9 8 7 20 20 H 1.09000 * 109.47003 * 59.99754 * 1 2 3 21 21 H 1.08999 * 109.46866 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46598 * 300.00131 * 1 2 3 23 23 H 0.97003 * 119.99416 * 180.02562 * 2 1 3 24 24 H 1.08000 * 120.41076 * 0.02562 * 6 5 3 25 25 H 1.07993 * 119.50210 * 179.97438 * 7 6 5 26 26 H 0.97000 * 120.00212 * 359.71511 * 10 9 8 27 27 H 0.97005 * 119.99679 * 179.97438 * 14 13 11 28 28 H 1.07999 * 120.53771 * 180.27760 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5314 2.2195 -0.0005 5 6 3.6205 1.1670 -0.0006 6 6 4.3391 -0.0348 -0.0005 7 6 5.7190 0.0060 -0.0005 8 7 6.3645 1.1556 -0.0058 9 6 5.7276 2.3168 -0.0007 10 7 6.4552 3.4992 -0.0013 11 6 5.8043 4.7034 -0.0018 12 1 4.7247 4.7337 -0.0021 13 6 6.5320 5.8858 0.0034 14 7 7.8470 5.8489 0.0034 15 14 5.6436 7.5291 0.0106 16 1 4.7923 7.6263 1.2234 17 1 6.6399 8.6302 0.0148 18 1 4.7925 7.6369 -1.2016 19 6 4.3365 2.3643 -0.0007 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 1.9500 -0.8401 -0.0004 24 1 3.8203 -0.9820 -0.0005 25 1 6.2783 -0.9179 -0.0001 26 1 7.4248 3.4721 -0.0014 27 1 8.3553 6.6750 0.0066 28 1 3.8198 3.3127 -0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534696.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:27 Heat of formation + Delta-G solvation = -18.675998 kcal Electronic energy + Delta-G solvation = -14236.833951 eV Core-core repulsion = 11672.848984 eV Total energy + Delta-G solvation = -2563.984967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.32444 -39.99052 -37.12010 -35.70202 -33.92696 -33.21303 -30.21779 -28.15226 -26.81463 -24.70681 -23.44035 -21.57233 -19.79327 -19.45038 -17.64399 -17.05098 -16.75408 -16.27531 -16.14857 -16.02528 -15.21363 -14.98065 -14.75989 -14.47853 -13.89244 -13.59951 -13.11023 -13.09383 -12.73502 -12.16081 -12.13704 -12.11928 -11.31925 -10.80727 -10.58611 -10.15096 -10.12054 -8.84389 -8.56831 -5.86171 0.03441 0.64651 1.38629 1.45964 1.50244 1.99794 2.17611 2.22949 2.87322 3.08303 3.39799 3.78363 3.99599 4.38431 4.49830 4.50541 4.64562 4.70483 4.95719 5.01945 5.18845 5.22791 5.37576 5.45500 5.67503 6.07454 6.52272 6.65586 7.07314 7.18153 7.36506 7.76237 8.61122 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.031204 B = 0.007796 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.110710 B = 3590.794935 C = 4472.758328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.709 5.709 3 C 0.556 3.444 4 O -0.582 6.582 5 C -0.054 4.054 6 C -0.249 4.249 7 C 0.154 3.846 8 N -0.584 5.584 9 C 0.348 3.652 10 N -0.554 5.554 11 C -0.326 4.326 12 H 0.100 0.900 13 C -0.019 4.019 14 N -0.920 5.920 15 Si 1.000 3.000 16 H -0.267 1.267 17 H -0.272 1.272 18 H -0.267 1.267 19 C -0.228 4.228 20 H 0.050 0.950 21 H 0.122 0.878 22 H 0.050 0.950 23 H 0.421 0.579 24 H 0.171 0.829 25 H 0.191 0.809 26 H 0.395 0.605 27 H 0.280 0.720 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.048 -13.195 0.021 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.361 5.361 3 C 0.344 3.656 4 O -0.462 6.462 5 C -0.065 4.065 6 C -0.275 4.275 7 C -0.008 4.008 8 N -0.306 5.306 9 C 0.107 3.893 10 N -0.163 5.163 11 C -0.456 4.456 12 H 0.118 0.882 13 C -0.220 4.220 14 N -0.558 5.558 15 Si 0.822 3.178 16 H -0.192 1.192 17 H -0.197 1.197 18 H -0.192 1.192 19 C -0.257 4.257 20 H 0.069 0.931 21 H 0.141 0.859 22 H 0.069 0.931 23 H 0.259 0.741 24 H 0.188 0.812 25 H 0.208 0.792 26 H 0.230 0.770 27 H 0.089 0.911 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.504 -11.969 0.015 15.283 hybrid contribution -0.282 0.829 0.007 0.876 sum -9.786 -11.140 0.022 14.828 Atomic orbital electron populations 1.21777 0.77844 1.04847 1.01565 1.45559 1.08641 1.07907 1.74019 1.18517 0.87275 0.84218 0.75612 1.90721 1.70685 1.33344 1.51464 1.19990 0.92418 0.94412 0.99647 1.21847 0.95167 0.97153 1.13320 1.22900 0.92248 0.94775 0.90851 1.67045 1.41904 0.97979 1.23670 1.18466 0.88491 0.86701 0.95617 1.40771 1.07980 1.01768 1.65757 1.19939 0.93439 0.82825 1.49403 0.88206 1.26207 0.96301 1.03160 0.96344 1.69783 1.06375 1.30613 1.49024 0.84872 0.77667 0.75856 0.79375 1.19162 1.19661 1.19160 1.21193 0.92959 0.98751 1.12789 0.93108 0.85943 0.93113 0.74091 0.81175 0.79189 0.77040 0.91100 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.42 10.70 127.77 1.37 2.79 15 2 N -0.71 -15.64 5.67 -487.17 -2.76 -18.40 15 3 C 0.56 19.35 7.80 86.88 0.68 20.02 15 4 O -0.58 -25.44 16.44 -3.78 -0.06 -25.50 15 5 C -0.05 -2.03 5.90 -19.91 -0.12 -2.15 15 6 C -0.25 -7.12 9.61 22.66 0.22 -6.90 15 7 C 0.15 4.91 11.17 84.64 0.95 5.85 15 8 N -0.58 -25.30 10.37 -193.39 -2.00 -27.30 15 9 C 0.35 17.19 7.61 133.13 1.01 18.21 15 10 N -0.55 -30.25 5.44 -189.27 -1.03 -31.28 15 11 C -0.33 -18.22 9.54 84.05 0.80 -17.41 15 12 H 0.10 5.52 5.65 -2.91 -0.02 5.51 15 13 C -0.02 -1.05 5.50 84.88 0.47 -0.58 15 14 N -0.92 -51.64 13.05 21.65 0.28 -51.36 15 15 Si 1.00 42.87 29.55 68.60 2.03 44.89 15 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 17 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 18 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 19 C -0.23 -10.76 8.90 22.81 0.20 -10.56 15 20 H 0.05 0.99 8.14 -2.39 -0.02 0.97 15 21 H 0.12 0.94 8.14 -2.39 -0.02 0.92 15 22 H 0.05 0.99 8.14 -2.39 -0.02 0.97 15 23 H 0.42 6.03 6.97 -92.71 -0.65 5.38 15 24 H 0.17 2.87 6.53 -2.91 -0.02 2.85 15 25 H 0.19 4.14 8.06 -2.91 -0.02 4.11 15 26 H 0.40 22.25 8.01 -92.71 -0.74 21.51 15 27 H 0.28 14.66 8.31 -92.70 -0.77 13.89 15 28 H 0.11 5.65 5.62 -2.91 -0.02 5.63 15 Total: -1.00 -71.13 252.15 1.85 -69.28 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.17 Total: 30.40 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.58 Total: 9.27 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -5.51 Total: -128.34 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.06 Total: -25.50 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -71.13 1.85 -69.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534696.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.603 kcal (2) G-P(sol) polarization free energy of solvation -71.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds