Wall clock time and date at job start Sun Mar 29 2020 22:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47690 * 2 1 4 4 C 1.53003 * 109.46925 * 120.00475 * 2 1 3 5 5 C 1.50700 * 109.46871 * 174.99651 * 4 2 1 6 6 C 1.38175 * 120.40019 * 124.99919 * 5 4 2 7 7 C 1.39673 * 118.32168 * 180.02562 * 6 5 4 8 8 N 1.38519 * 120.53829 * 179.97438 * 7 6 5 9 9 C 1.36931 * 119.99930 * 0.02562 * 8 7 6 10 10 H 1.08002 * 120.00438 * 359.97438 * 9 8 7 11 11 C 1.38853 * 119.99605 * 179.71906 * 9 8 7 12 12 N 1.31536 * 119.99829 * 180.27495 * 11 9 8 13 13 Si 1.86800 * 120.00284 * 0.27761 * 11 9 8 14 14 H 1.48498 * 109.47112 * 89.99976 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00087 * 13 11 9 16 16 H 1.48498 * 109.47011 * 329.99709 * 13 11 9 17 17 N 1.33064 * 118.92140 * 0.25079 * 7 6 5 18 18 C 1.31705 * 120.68555 * 359.48905 * 17 7 6 19 19 N 1.31822 * 121.85043 * 0.52610 * 18 17 7 20 20 H 1.09001 * 109.46425 * 300.00561 * 1 2 3 21 21 H 1.09005 * 109.46799 * 59.99558 * 1 2 3 22 22 H 1.08994 * 109.47461 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46425 * 239.99439 * 2 1 3 24 24 H 1.08996 * 109.47342 * 59.99517 * 3 2 1 25 25 H 1.09000 * 109.47262 * 180.02562 * 3 2 1 26 26 H 1.09013 * 109.46808 * 300.00310 * 3 2 1 27 27 H 1.08997 * 109.47571 * 54.98907 * 4 2 1 28 28 H 1.09004 * 109.46404 * 294.99274 * 4 2 1 29 29 H 1.08000 * 120.84205 * 0.03736 * 6 5 4 30 30 H 0.97000 * 119.99650 * 179.97438 * 8 7 6 31 31 H 0.97005 * 120.00078 * 180.02562 * 12 11 9 32 32 H 1.08001 * 119.07417 * 180.24408 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5419 -0.8296 1.1888 6 6 4.3199 -0.3479 2.2242 7 6 5.7076 -0.4702 2.1228 8 7 6.5311 -0.0026 3.1336 9 6 5.9861 0.5848 4.2440 10 1 4.9142 0.6840 4.3315 11 6 6.8114 1.0483 5.2599 12 7 6.2877 1.6077 6.3290 13 14 8.6654 0.8775 5.1084 14 1 9.2211 2.0841 4.4448 15 1 9.2618 0.7376 6.4612 16 1 8.9872 -0.3252 4.2989 17 7 6.2258 -1.0383 1.0368 18 6 5.4453 -1.4880 0.0760 19 7 4.1326 -1.3875 0.1418 20 1 -0.3632 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6769 1.9563 0.8899 25 1 3.1302 1.4423 -0.0005 26 1 1.6768 1.9563 -0.8901 27 1 1.6053 -1.7198 1.2952 28 1 1.7517 -0.1583 2.1369 29 1 3.8665 0.1115 3.0901 30 1 7.4938 -0.0920 3.0552 31 1 6.8643 1.9318 7.0386 32 1 5.8936 -1.9481 -0.7922 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155535004.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:38 Heat of formation + Delta-G solvation = 29.285014 kcal Electronic energy + Delta-G solvation = -14658.618963 eV Core-core repulsion = 12232.546836 eV Total energy + Delta-G solvation = -2426.072127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88817 -36.51708 -35.57101 -32.63128 -31.83574 -29.90156 -26.93270 -26.87962 -25.10159 -22.76591 -21.40563 -19.57862 -18.65119 -16.84316 -15.92691 -14.99325 -14.66536 -14.39137 -14.25920 -13.83553 -13.41083 -13.25703 -13.04990 -12.30623 -12.07400 -11.97619 -11.73641 -11.52177 -11.00495 -10.83290 -10.64991 -10.62449 -10.39207 -10.27710 -9.53248 -9.29230 -8.79410 -8.15912 -7.55934 -6.64798 -4.01118 2.10100 2.35671 2.99289 2.99968 3.03821 3.88968 4.39399 4.63066 4.91790 5.03713 5.11729 5.24745 5.27590 5.49161 5.75973 5.83347 5.94406 5.98111 6.07265 6.15221 6.19150 6.26495 6.43442 6.52984 6.55842 6.65883 6.79694 7.28742 7.37801 7.75932 8.09893 8.40560 8.98126 9.04235 9.44036 10.45139 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036549 B = 0.007255 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.906612 B = 3858.347739 C = 4387.051073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.060 4.060 5 C 0.190 3.810 6 C -0.291 4.291 7 C 0.387 3.613 8 N -0.547 5.547 9 C -0.310 4.310 10 H 0.122 0.878 11 C 0.049 3.951 12 N -0.864 5.864 13 Si 0.883 3.117 14 H -0.266 1.266 15 H -0.272 1.272 16 H -0.264 1.264 17 N -0.614 5.614 18 C 0.329 3.671 19 N -0.604 5.604 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.132 0.868 30 H 0.384 0.616 31 H 0.280 0.720 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.594 -2.073 -8.100 10.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.201 4.201 4 C -0.098 4.098 5 C 0.051 3.949 6 C -0.322 4.322 7 C 0.140 3.860 8 N -0.157 5.157 9 C -0.440 4.440 10 H 0.139 0.861 11 C -0.158 4.158 12 N -0.500 5.500 13 Si 0.708 3.292 14 H -0.191 1.191 15 H -0.197 1.197 16 H -0.189 1.189 17 N -0.344 5.344 18 C 0.037 3.963 19 N -0.330 5.330 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.150 0.850 30 H 0.219 0.781 31 H 0.091 0.909 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.196 -2.194 -8.312 10.045 hybrid contribution 1.115 0.360 0.913 1.485 sum -4.082 -1.834 -7.399 8.647 Atomic orbital electron populations 1.21854 0.95657 1.01400 1.01415 1.21001 0.94646 0.96235 0.98618 1.21811 1.01448 0.95893 1.00972 1.20531 0.89724 1.00981 0.98552 1.20908 0.95542 0.89746 0.88663 1.21717 0.93313 1.13702 1.03482 1.18238 0.88432 0.91884 0.87487 1.41010 1.06802 1.52342 1.15590 1.19450 0.96153 1.34597 0.93758 0.86059 1.25016 0.99428 0.96327 0.95064 1.69652 1.36489 1.36649 1.07191 0.86570 0.84199 0.79483 0.78951 1.19129 1.19698 1.18919 1.67750 1.41436 1.21312 1.03901 1.24068 0.86016 0.91600 0.94636 1.68003 1.12231 1.25303 1.27443 0.92854 0.92985 0.92848 0.90080 0.92872 0.92709 0.93339 0.90608 0.90738 0.84977 0.78066 0.90947 0.80903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.19 37.16 0.34 -1.27 16 2 C -0.09 -1.18 2.85 -90.62 -0.26 -1.44 16 3 C -0.14 -2.04 9.01 37.15 0.33 -1.70 16 4 C -0.06 -0.92 5.12 -27.88 -0.14 -1.06 16 5 C 0.19 3.64 5.18 -82.32 -0.43 3.22 16 6 C -0.29 -6.32 9.02 -39.07 -0.35 -6.67 16 7 C 0.39 9.00 7.68 -154.72 -1.19 7.81 16 8 N -0.55 -13.16 5.23 -10.98 -0.06 -13.21 16 9 C -0.31 -8.00 10.05 -15.05 -0.15 -8.15 16 10 H 0.12 3.28 5.96 -52.49 -0.31 2.97 16 11 C 0.05 1.24 5.50 -17.45 -0.10 1.15 16 12 N -0.86 -23.31 13.96 55.49 0.77 -22.53 16 13 Si 0.88 19.08 27.74 -169.99 -4.72 14.36 16 14 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.26 -5.53 6.51 56.52 0.37 -5.17 16 17 N -0.61 -13.45 10.47 -13.79 -0.14 -13.59 16 18 C 0.33 6.34 12.28 -92.21 -1.13 5.20 16 19 N -0.60 -11.68 9.93 -10.87 -0.11 -11.79 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.08 1.20 7.84 -51.93 -0.41 0.79 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.91 7.38 -51.93 -0.38 0.53 16 26 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.10 7.93 -51.93 -0.41 0.68 16 29 H 0.13 2.90 6.02 -52.49 -0.32 2.59 16 30 H 0.38 8.87 5.87 -40.82 -0.24 8.63 16 31 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.17 2.66 8.06 -52.49 -0.42 2.23 16 LS Contribution 270.17 15.07 4.07 4.07 Total: -1.00 -27.43 270.17 -7.45 -34.88 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.20 Total: 10.74 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -3.07 Total: -2.92 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.46 Total: -61.13 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.72 Total: 14.36 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.43 -7.45 -34.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155535004.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.161 kcal (2) G-P(sol) polarization free energy of solvation -27.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds