Wall clock time and date at job start Sun Mar 29 2020 22:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47690 * 2 1 4 4 C 1.53003 * 109.46925 * 120.00475 * 2 1 3 5 5 C 1.50700 * 109.46871 * 174.99651 * 4 2 1 6 6 C 1.38175 * 120.40019 * 124.99919 * 5 4 2 7 7 C 1.39673 * 118.32168 * 180.02562 * 6 5 4 8 8 N 1.38519 * 120.53829 * 179.97438 * 7 6 5 9 9 C 1.36931 * 119.99930 * 0.02562 * 8 7 6 10 10 H 1.08002 * 120.00438 * 359.97438 * 9 8 7 11 11 C 1.38853 * 119.99605 * 179.71906 * 9 8 7 12 12 N 1.31536 * 119.99829 * 180.27495 * 11 9 8 13 13 Si 1.86800 * 120.00284 * 0.27761 * 11 9 8 14 14 H 1.48498 * 109.47112 * 89.99976 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00087 * 13 11 9 16 16 H 1.48498 * 109.47011 * 329.99709 * 13 11 9 17 17 N 1.33064 * 118.92140 * 0.25079 * 7 6 5 18 18 C 1.31705 * 120.68555 * 359.48905 * 17 7 6 19 19 N 1.31822 * 121.85043 * 0.52610 * 18 17 7 20 20 H 1.09001 * 109.46425 * 300.00561 * 1 2 3 21 21 H 1.09005 * 109.46799 * 59.99558 * 1 2 3 22 22 H 1.08994 * 109.47461 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46425 * 239.99439 * 2 1 3 24 24 H 1.08996 * 109.47342 * 59.99517 * 3 2 1 25 25 H 1.09000 * 109.47262 * 180.02562 * 3 2 1 26 26 H 1.09013 * 109.46808 * 300.00310 * 3 2 1 27 27 H 1.08997 * 109.47571 * 54.98907 * 4 2 1 28 28 H 1.09004 * 109.46404 * 294.99274 * 4 2 1 29 29 H 1.08000 * 120.84205 * 0.03736 * 6 5 4 30 30 H 0.97000 * 119.99650 * 179.97438 * 8 7 6 31 31 H 0.97005 * 120.00078 * 180.02562 * 12 11 9 32 32 H 1.08001 * 119.07417 * 180.24408 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5419 -0.8296 1.1888 6 6 4.3199 -0.3479 2.2242 7 6 5.7076 -0.4702 2.1228 8 7 6.5311 -0.0026 3.1336 9 6 5.9861 0.5848 4.2440 10 1 4.9142 0.6840 4.3315 11 6 6.8114 1.0483 5.2599 12 7 6.2877 1.6077 6.3290 13 14 8.6654 0.8775 5.1084 14 1 9.2211 2.0841 4.4448 15 1 9.2618 0.7376 6.4612 16 1 8.9872 -0.3252 4.2989 17 7 6.2258 -1.0383 1.0368 18 6 5.4453 -1.4880 0.0760 19 7 4.1326 -1.3875 0.1418 20 1 -0.3632 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6769 1.9563 0.8899 25 1 3.1302 1.4423 -0.0005 26 1 1.6768 1.9563 -0.8901 27 1 1.6053 -1.7198 1.2952 28 1 1.7517 -0.1583 2.1369 29 1 3.8665 0.1115 3.0901 30 1 7.4938 -0.0920 3.0552 31 1 6.8643 1.9318 7.0386 32 1 5.8936 -1.9481 -0.7922 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155535004.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:38 Heat of formation + Delta-G solvation = 14.287686 kcal Electronic energy + Delta-G solvation = -14659.269296 eV Core-core repulsion = 12232.546836 eV Total energy + Delta-G solvation = -2426.722459 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.56262 -38.03072 -37.08674 -34.43831 -33.46161 -31.60922 -28.29973 -27.93413 -26.96148 -24.42246 -22.99337 -20.83952 -20.48529 -18.55796 -17.62597 -16.52908 -16.14555 -16.08381 -15.77523 -15.35944 -14.92063 -14.72356 -14.45486 -14.15096 -13.49562 -13.27916 -13.03253 -12.72422 -12.56108 -12.53165 -12.09799 -11.91188 -11.78357 -11.49343 -11.24719 -11.08429 -10.47265 -9.83847 -9.36602 -8.56651 -5.99865 0.45355 0.64200 1.26328 1.30518 1.34050 2.10250 2.63074 2.81737 3.32694 3.48695 3.69711 4.01279 4.13645 4.17568 4.36901 4.59443 4.72202 4.82268 4.83577 4.88634 4.99287 5.04618 5.08953 5.18331 5.31437 5.41373 5.48757 5.59059 5.63094 5.95040 6.34722 6.51815 7.13537 7.19420 7.70949 8.56908 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036549 B = 0.007255 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.906612 B = 3858.347739 C = 4387.051073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.062 4.062 5 C 0.202 3.798 6 C -0.316 4.316 7 C 0.381 3.619 8 N -0.562 5.562 9 C -0.320 4.320 10 H 0.094 0.906 11 C 0.002 3.998 12 N -0.911 5.911 13 Si 0.947 3.053 14 H -0.261 1.261 15 H -0.266 1.266 16 H -0.254 1.254 17 N -0.626 5.626 18 C 0.328 3.672 19 N -0.596 5.596 20 H 0.057 0.943 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.022 0.978 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.387 0.613 31 H 0.284 0.716 32 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 -2.963 -10.027 12.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.199 4.199 4 C -0.099 4.099 5 C 0.062 3.938 6 C -0.346 4.346 7 C 0.135 3.865 8 N -0.176 5.176 9 C -0.449 4.449 10 H 0.112 0.888 11 C -0.201 4.201 12 N -0.548 5.548 13 Si 0.769 3.231 14 H -0.185 1.185 15 H -0.191 1.191 16 H -0.179 1.179 17 N -0.355 5.355 18 C 0.037 3.963 19 N -0.320 5.320 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.138 0.862 30 H 0.223 0.777 31 H 0.093 0.907 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.594 -3.106 -10.284 12.112 hybrid contribution 1.053 0.543 1.280 1.745 sum -4.541 -2.563 -9.004 10.405 Atomic orbital electron populations 1.21800 0.93087 1.02472 1.02372 1.20964 0.96699 0.95204 0.97038 1.21802 0.99289 0.96810 1.02041 1.20696 0.86968 1.02395 0.99890 1.21494 0.97427 0.87502 0.87357 1.21821 0.93283 1.15177 1.04315 1.18621 0.89047 0.91177 0.87662 1.40831 1.06881 1.54156 1.15717 1.19270 0.95232 1.35518 0.94913 0.88789 1.25730 1.03957 0.95913 0.94469 1.69755 1.38224 1.38583 1.08265 0.85583 0.78464 0.79847 0.79219 1.18517 1.19076 1.17859 1.67844 1.42085 1.21635 1.03937 1.25002 0.86044 0.90274 0.94979 1.68170 1.12403 1.24489 1.26950 0.92377 0.91616 0.91757 0.90806 0.92739 0.95890 0.91429 0.88853 0.90337 0.86171 0.77727 0.90658 0.76651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.19 71.99 0.66 -1.96 16 2 C -0.08 -2.00 2.85 -10.79 -0.03 -2.03 16 3 C -0.14 -3.82 9.01 71.98 0.65 -3.17 16 4 C -0.06 -1.78 5.12 29.85 0.15 -1.63 16 5 C 0.20 7.53 5.18 42.44 0.22 7.75 16 6 C -0.32 -13.86 9.02 22.60 0.20 -13.66 16 7 C 0.38 17.79 7.68 133.16 1.02 18.81 16 8 N -0.56 -27.45 5.23 -188.66 -0.99 -28.44 16 9 C -0.32 -17.13 10.05 84.04 0.84 -16.29 16 10 H 0.09 5.41 5.96 -2.91 -0.02 5.39 16 11 C 0.00 0.09 5.50 84.88 0.47 0.56 16 12 N -0.91 -50.75 13.96 21.65 0.30 -50.45 16 13 Si 0.95 39.64 27.74 68.60 1.90 41.54 16 14 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 15 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 16 H -0.25 -10.09 6.51 99.48 0.65 -9.44 16 17 N -0.63 -26.58 10.47 -197.55 -2.07 -28.64 16 18 C 0.33 11.81 12.28 180.90 2.22 14.04 16 19 N -0.60 -21.72 9.93 -188.32 -1.87 -23.59 16 20 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 22 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 23 H 0.07 1.98 7.84 -2.39 -0.02 1.96 16 24 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.02 0.74 7.38 -2.39 -0.02 0.72 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.52 16 27 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.08 2.22 7.93 -2.39 -0.02 2.20 16 29 H 0.12 5.54 6.02 -2.91 -0.02 5.52 16 30 H 0.39 17.85 5.87 -92.71 -0.54 17.30 16 31 H 0.28 14.58 8.31 -92.70 -0.77 13.81 16 32 H 0.22 5.76 8.06 -2.91 -0.02 5.74 16 Total: -1.00 -59.63 270.17 4.21 -55.42 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.52 Total: 31.73 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 6.41 Total: 2.42 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -4.62 Total: -131.12 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.90 Total: 41.54 kcal Total: -59.63 4.21 -55.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155535004.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.711 kcal (2) G-P(sol) polarization free energy of solvation -59.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds