Wall clock time and date at job start Sun Mar 29 2020 22:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 C 1.53003 * 109.47046 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46871 * 179.97438 * 4 3 2 6 6 C 1.38175 * 120.40019 * 124.99919 * 5 4 3 7 7 C 1.39673 * 118.32168 * 180.02562 * 6 5 4 8 8 N 1.38519 * 120.53829 * 179.97438 * 7 6 5 9 9 C 1.36931 * 119.99930 * 0.02562 * 8 7 6 10 10 H 1.08002 * 120.00438 * 359.97438 * 9 8 7 11 11 C 1.38853 * 119.99605 * 179.71906 * 9 8 7 12 12 N 1.31536 * 119.99829 * 180.27495 * 11 9 8 13 13 Si 1.86800 * 120.00284 * 0.27761 * 11 9 8 14 14 H 1.48498 * 109.47112 * 89.99976 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00087 * 13 11 9 16 16 H 1.48498 * 109.47011 * 329.99709 * 13 11 9 17 17 N 1.33064 * 118.92140 * 0.25079 * 7 6 5 18 18 C 1.31705 * 120.68555 * 359.48905 * 17 7 6 19 19 N 1.31822 * 121.85043 * 0.52610 * 18 17 7 20 20 H 1.09007 * 109.46995 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46952 * 299.99876 * 1 2 3 22 22 H 1.08990 * 109.47391 * 60.00256 * 1 2 3 23 23 H 1.09001 * 109.46715 * 239.99658 * 2 1 3 24 24 H 1.09003 * 109.47278 * 120.00041 * 2 1 3 25 25 H 1.08993 * 109.47180 * 59.99724 * 3 2 1 26 26 H 1.09000 * 109.46587 * 299.99599 * 3 2 1 27 27 H 1.08997 * 109.47571 * 59.99090 * 4 3 2 28 28 H 1.09004 * 109.46404 * 299.99457 * 4 3 2 29 29 H 1.08000 * 120.84205 * 0.03736 * 6 5 4 30 30 H 0.97000 * 119.99650 * 179.97438 * 8 7 6 31 31 H 0.97005 * 120.00078 * 180.02562 * 12 11 9 32 32 H 1.08001 * 119.07417 * 180.24408 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 -0.0013 6 6 4.9502 3.2950 0.9745 7 6 5.3876 4.6208 0.9327 8 7 6.2674 5.1022 1.8883 9 6 6.7158 4.2761 2.8840 10 1 6.3833 3.2494 2.9247 11 6 7.6022 4.7571 3.8384 12 7 8.0372 3.9621 4.7918 13 14 8.1770 6.5331 3.7686 14 1 7.2518 7.3842 4.5590 15 1 9.5464 6.6328 4.3341 16 1 8.1897 6.9941 2.3570 17 7 4.9411 5.4155 -0.0367 18 6 4.1082 4.9597 -0.9494 19 7 3.6770 3.7140 -0.9374 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 1.9562 -0.8900 27 1 3.9331 0.9287 -0.8907 28 1 3.9336 0.9286 0.8892 29 1 5.2899 2.6242 1.7498 30 1 6.5664 6.0242 1.8515 31 1 8.6562 4.2981 5.4589 32 1 3.7653 5.6263 -1.7268 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155537916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:41 Heat of formation + Delta-G solvation = 25.956913 kcal Electronic energy + Delta-G solvation = -14323.836013 eV Core-core repulsion = 11897.619569 eV Total energy + Delta-G solvation = -2426.216444 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.84596 -36.22879 -35.42809 -32.86543 -32.18023 -30.11864 -28.80568 -25.19592 -24.31732 -22.65283 -21.19714 -20.39506 -18.67047 -16.78865 -16.03019 -15.25101 -14.73121 -14.38887 -14.18750 -13.98861 -13.46389 -13.17732 -12.95064 -12.80173 -12.28674 -11.98630 -11.71083 -11.24923 -11.01370 -10.86170 -10.79249 -10.64062 -10.37785 -10.28841 -9.54072 -9.30247 -8.81045 -8.16746 -7.56694 -6.65171 -4.01516 2.09106 2.34811 2.99169 2.99879 3.03706 3.88724 4.38689 4.62255 4.88293 5.02603 5.09053 5.14689 5.27031 5.37203 5.57537 5.79328 5.84765 5.91991 5.99301 6.10098 6.13824 6.25051 6.34586 6.47287 6.53005 6.62002 6.77842 7.28108 7.37174 7.75383 8.09181 8.40057 8.97480 9.03724 9.43368 10.44728 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036898 B = 0.006288 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.659781 B = 4451.967044 C = 5051.452048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.108 4.108 4 C -0.063 4.063 5 C 0.185 3.815 6 C -0.291 4.291 7 C 0.387 3.613 8 N -0.546 5.546 9 C -0.310 4.310 10 H 0.122 0.878 11 C 0.049 3.951 12 N -0.864 5.864 13 Si 0.883 3.117 14 H -0.266 1.266 15 H -0.272 1.272 16 H -0.264 1.264 17 N -0.614 5.614 18 C 0.329 3.671 19 N -0.604 5.604 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.133 0.867 30 H 0.384 0.616 31 H 0.280 0.720 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.975 -3.378 -6.471 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.101 4.101 5 C 0.047 3.953 6 C -0.322 4.322 7 C 0.139 3.861 8 N -0.157 5.157 9 C -0.440 4.440 10 H 0.139 0.861 11 C -0.158 4.158 12 N -0.499 5.499 13 Si 0.708 3.292 14 H -0.191 1.191 15 H -0.197 1.197 16 H -0.189 1.189 17 N -0.344 5.344 18 C 0.037 3.963 19 N -0.330 5.330 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.151 0.849 30 H 0.220 0.780 31 H 0.091 0.909 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.960 -2.943 -6.647 10.780 hybrid contribution 0.940 0.771 0.836 1.475 sum -7.020 -2.172 -5.811 9.368 Atomic orbital electron populations 1.21763 0.96216 1.01097 1.01795 1.21559 0.95594 0.97320 1.01798 1.21469 0.94278 0.96030 1.02768 1.20447 0.95916 0.91279 1.02485 1.20967 0.90341 0.94981 0.89018 1.21731 1.08003 0.97106 1.05377 1.18236 0.90101 0.89432 0.88308 1.41012 1.39144 1.12361 1.23170 1.19453 1.24954 0.96707 1.02871 0.86053 1.25018 0.96378 0.99023 0.95411 1.69652 1.30761 1.35805 1.13727 0.86565 0.79650 0.83729 0.79236 1.19121 1.19689 1.18908 1.67751 1.20049 1.39043 1.07528 1.24076 0.88607 0.90190 0.93431 1.68010 1.31891 1.04695 1.28430 0.93149 0.92868 0.92802 0.92146 0.92157 0.92370 0.90896 0.90618 0.90748 0.84899 0.78045 0.90935 0.80852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.13 -1.39 5.93 -26.73 -0.16 -1.55 16 3 C -0.11 -1.47 5.08 -26.73 -0.14 -1.61 16 4 C -0.06 -0.97 5.64 -27.88 -0.16 -1.13 16 5 C 0.19 3.60 6.20 -82.32 -0.51 3.09 16 6 C -0.29 -6.37 9.02 -39.07 -0.35 -6.72 16 7 C 0.39 9.04 7.68 -154.72 -1.19 7.85 16 8 N -0.55 -13.17 5.23 -10.98 -0.06 -13.23 16 9 C -0.31 -8.02 10.05 -15.05 -0.15 -8.17 16 10 H 0.12 3.28 5.96 -52.49 -0.31 2.97 16 11 C 0.05 1.25 5.50 -17.45 -0.10 1.15 16 12 N -0.86 -23.29 13.96 55.49 0.77 -22.51 16 13 Si 0.88 19.06 27.74 -169.99 -4.72 14.34 16 14 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 16 H -0.26 -5.52 6.51 56.52 0.37 -5.16 16 17 N -0.61 -13.51 10.47 -13.79 -0.14 -13.66 16 18 C 0.33 6.38 12.28 -92.21 -1.13 5.25 16 19 N -0.60 -11.82 10.03 -10.87 -0.11 -11.93 16 20 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.05 7.98 -51.93 -0.41 0.64 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.08 7.93 -51.93 -0.41 0.67 16 29 H 0.13 2.92 6.02 -52.49 -0.32 2.61 16 30 H 0.38 8.88 5.87 -40.82 -0.24 8.64 16 31 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 272.59 15.07 4.11 4.11 Total: -1.00 -27.59 272.59 -7.90 -35.50 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.25 Total: 10.34 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.51 Total: -2.97 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.46 Total: -61.32 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.72 Total: 14.34 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.59 -7.90 -35.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.452 kcal (2) G-P(sol) polarization free energy of solvation -27.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds