Wall clock time and date at job start Sun Mar 29 2020 22:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 C 1.53003 * 109.47046 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46871 * 179.97438 * 4 3 2 6 6 C 1.38175 * 120.40019 * 124.99919 * 5 4 3 7 7 C 1.39673 * 118.32168 * 180.02562 * 6 5 4 8 8 N 1.38519 * 120.53829 * 179.97438 * 7 6 5 9 9 C 1.36931 * 119.99930 * 0.02562 * 8 7 6 10 10 H 1.08002 * 120.00438 * 359.97438 * 9 8 7 11 11 C 1.38853 * 119.99605 * 179.71906 * 9 8 7 12 12 N 1.31536 * 119.99829 * 180.27495 * 11 9 8 13 13 Si 1.86800 * 120.00284 * 0.27761 * 11 9 8 14 14 H 1.48498 * 109.47112 * 89.99976 * 13 11 9 15 15 H 1.48499 * 109.47134 * 210.00087 * 13 11 9 16 16 H 1.48498 * 109.47011 * 329.99709 * 13 11 9 17 17 N 1.33064 * 118.92140 * 0.25079 * 7 6 5 18 18 C 1.31705 * 120.68555 * 359.48905 * 17 7 6 19 19 N 1.31822 * 121.85043 * 0.52610 * 18 17 7 20 20 H 1.09007 * 109.46995 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46952 * 299.99876 * 1 2 3 22 22 H 1.08990 * 109.47391 * 60.00256 * 1 2 3 23 23 H 1.09001 * 109.46715 * 239.99658 * 2 1 3 24 24 H 1.09003 * 109.47278 * 120.00041 * 2 1 3 25 25 H 1.08993 * 109.47180 * 59.99724 * 3 2 1 26 26 H 1.09000 * 109.46587 * 299.99599 * 3 2 1 27 27 H 1.08997 * 109.47571 * 59.99090 * 4 3 2 28 28 H 1.09004 * 109.46404 * 299.99457 * 4 3 2 29 29 H 1.08000 * 120.84205 * 0.03736 * 6 5 4 30 30 H 0.97000 * 119.99650 * 179.97438 * 8 7 6 31 31 H 0.97005 * 120.00078 * 180.02562 * 12 11 9 32 32 H 1.08001 * 119.07417 * 180.24408 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 -0.0013 6 6 4.9502 3.2950 0.9745 7 6 5.3876 4.6208 0.9327 8 7 6.2674 5.1022 1.8883 9 6 6.7158 4.2761 2.8840 10 1 6.3833 3.2494 2.9247 11 6 7.6022 4.7571 3.8384 12 7 8.0372 3.9621 4.7918 13 14 8.1770 6.5331 3.7686 14 1 7.2518 7.3842 4.5590 15 1 9.5464 6.6328 4.3341 16 1 8.1897 6.9941 2.3570 17 7 4.9411 5.4155 -0.0367 18 6 4.1082 4.9597 -0.9494 19 7 3.6770 3.7140 -0.9374 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 1.9562 -0.8900 27 1 3.9331 0.9287 -0.8907 28 1 3.9336 0.9286 0.8892 29 1 5.2899 2.6242 1.7498 30 1 6.5664 6.0242 1.8515 31 1 8.6562 4.2981 5.4589 32 1 3.7653 5.6263 -1.7268 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:41 Heat of formation + Delta-G solvation = 11.170904 kcal Electronic energy + Delta-G solvation = -14324.477182 eV Core-core repulsion = 11897.619569 eV Total energy + Delta-G solvation = -2426.857613 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.53440 -37.87929 -36.73574 -34.51768 -33.81011 -31.77318 -30.13834 -27.03675 -25.61009 -24.29122 -22.47713 -21.70420 -20.52523 -18.52001 -17.70674 -16.48707 -16.34877 -16.10381 -15.71938 -15.52116 -14.92717 -14.61289 -14.31690 -14.10693 -13.91121 -13.48818 -13.01779 -12.66876 -12.55891 -12.19085 -12.09158 -11.99336 -11.72603 -11.40017 -11.26313 -11.08978 -10.49903 -9.85091 -9.37779 -8.56867 -6.00188 0.43663 0.62696 1.26669 1.30836 1.34427 2.10332 2.62275 2.81294 3.31583 3.47994 3.68463 4.04115 4.14966 4.25247 4.37269 4.52625 4.58604 4.79767 4.83506 4.91499 4.96111 5.07144 5.15810 5.18638 5.35469 5.42224 5.49290 5.55809 5.62171 5.93955 6.33791 6.51204 7.12834 7.18708 7.69866 8.56615 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036898 B = 0.006288 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.659781 B = 4451.967044 C = 5051.452048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.100 4.100 4 C -0.063 4.063 5 C 0.195 3.805 6 C -0.317 4.317 7 C 0.381 3.619 8 N -0.561 5.561 9 C -0.320 4.320 10 H 0.095 0.905 11 C 0.002 3.998 12 N -0.910 5.910 13 Si 0.947 3.053 14 H -0.260 1.260 15 H -0.266 1.266 16 H -0.254 1.254 17 N -0.625 5.625 18 C 0.328 3.672 19 N -0.597 5.597 20 H 0.064 0.936 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.387 0.613 31 H 0.284 0.716 32 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 -3.054 -8.165 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.138 4.138 4 C -0.101 4.101 5 C 0.055 3.945 6 C -0.347 4.347 7 C 0.134 3.866 8 N -0.175 5.175 9 C -0.450 4.450 10 H 0.112 0.888 11 C -0.200 4.200 12 N -0.548 5.548 13 Si 0.769 3.231 14 H -0.185 1.185 15 H -0.191 1.191 16 H -0.178 1.178 17 N -0.354 5.354 18 C 0.037 3.963 19 N -0.321 5.321 20 H 0.083 0.917 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.140 0.860 30 H 0.223 0.777 31 H 0.094 0.906 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -9.114 -2.624 -8.382 12.657 hybrid contribution 1.097 0.569 1.153 1.690 sum -8.017 -2.055 -7.229 10.989 Atomic orbital electron populations 1.21759 0.95261 1.02090 1.01723 1.21528 0.96408 0.95382 1.02542 1.21404 0.92734 0.97821 1.01822 1.20591 0.97152 0.88730 1.03633 1.21590 0.88585 0.96750 0.87558 1.21851 1.09541 0.96860 1.06447 1.18619 0.89523 0.90138 0.88288 1.40836 1.40629 1.12321 1.23668 1.19276 1.25655 0.96077 1.03990 0.88761 1.25736 0.96314 1.03189 0.94808 1.69755 1.32197 1.37877 1.14930 0.85577 0.79271 0.78521 0.79708 1.18500 1.19076 1.17832 1.67848 1.20775 1.39116 1.07707 1.25021 0.87167 0.90741 0.93324 1.68181 1.31214 1.04839 1.27913 0.91662 0.93268 0.92598 0.91019 0.91824 0.93682 0.91415 0.88840 0.90180 0.85971 0.77681 0.90634 0.76546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.93 16 2 C -0.12 -2.39 5.93 30.59 0.18 -2.21 16 3 C -0.10 -2.53 5.08 30.60 0.16 -2.38 16 4 C -0.06 -1.82 5.64 29.85 0.17 -1.65 16 5 C 0.19 7.33 6.20 42.44 0.26 7.59 16 6 C -0.32 -13.93 9.02 22.60 0.20 -13.73 16 7 C 0.38 17.76 7.68 133.16 1.02 18.78 16 8 N -0.56 -27.32 5.23 -188.66 -0.99 -28.31 16 9 C -0.32 -17.12 10.05 84.04 0.84 -16.27 16 10 H 0.09 5.41 5.96 -2.91 -0.02 5.39 16 11 C 0.00 0.11 5.50 84.88 0.47 0.57 16 12 N -0.91 -50.57 13.96 21.65 0.30 -50.27 16 13 Si 0.95 39.47 27.74 68.60 1.90 41.38 16 14 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 15 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 16 H -0.25 -10.03 6.51 99.48 0.65 -9.38 16 17 N -0.63 -26.54 10.47 -197.55 -2.07 -28.61 16 18 C 0.33 11.84 12.28 180.90 2.22 14.06 16 19 N -0.60 -21.90 10.03 -188.32 -1.89 -23.79 16 20 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 21 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.79 7.98 -2.39 -0.02 1.77 16 27 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.08 2.23 7.93 -2.39 -0.02 2.22 16 29 H 0.12 5.61 6.02 -2.91 -0.02 5.59 16 30 H 0.39 17.80 5.87 -92.71 -0.54 17.25 16 31 H 0.28 14.55 8.31 -92.70 -0.77 13.78 16 32 H 0.22 5.76 8.06 -2.91 -0.02 5.74 16 Total: -1.00 -59.43 272.59 4.02 -55.42 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.51 Total: 31.35 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 6.24 Total: 2.84 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -4.64 Total: -130.98 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 1.90 Total: 41.38 kcal Total: -59.43 4.02 -55.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.589 kcal (2) G-P(sol) polarization free energy of solvation -59.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds