Wall clock time and date at job start Sun Mar 29 2020 21:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20762 * 119.99814 * 2 1 4 4 C 1.50700 * 120.00405 * 180.02562 * 2 1 3 5 5 N 1.46507 * 109.47190 * 179.97438 * 4 2 1 6 6 C 1.38827 * 119.99710 * 179.72274 * 5 4 2 7 7 C 1.39957 * 119.97184 * 0.27578 * 6 5 4 8 8 N 1.32130 * 120.31943 * 179.97438 * 7 6 5 9 9 C 1.31930 * 120.27119 * 0.02562 * 8 7 6 10 10 C 1.40689 * 119.93145 * 359.97438 * 9 8 7 11 11 C 1.41273 * 120.15097 * 180.02562 * 10 9 8 12 12 H 1.07990 * 120.00488 * 353.81896 * 11 10 9 13 13 C 1.40059 * 119.99609 * 173.82520 * 11 10 9 14 14 N 1.30738 * 120.00052 * 6.32818 * 13 11 10 15 15 Si 1.86799 * 120.00168 * 186.32811 * 13 11 10 16 16 H 1.48502 * 109.46821 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46967 * 119.99936 * 15 13 11 18 18 H 1.48499 * 109.47194 * 239.99895 * 15 13 11 19 19 N 1.32241 * 119.96439 * 180.02562 * 6 5 4 20 20 H 1.09006 * 109.46532 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46913 * 299.99130 * 1 2 3 22 22 H 1.08998 * 109.47466 * 59.99873 * 1 2 3 23 23 H 1.09000 * 109.47436 * 59.99713 * 4 2 1 24 24 H 1.08997 * 109.46866 * 299.99453 * 4 2 1 25 25 H 0.97002 * 119.99486 * 0.02562 * 5 4 2 26 26 H 1.08004 * 119.84337 * 359.96078 * 7 6 5 27 27 H 1.07995 * 120.03802 * 179.97438 * 9 8 7 28 28 H 0.96993 * 119.99999 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 7 3.7010 -1.0372 -0.0011 6 6 4.6031 -2.0924 0.0042 7 6 4.1360 -3.4117 0.0041 8 7 4.9885 -4.4212 0.0085 9 6 6.2881 -4.1941 0.0136 10 6 6.7697 -2.8722 0.0137 11 6 8.1604 -2.6238 0.0186 12 1 8.8552 -3.4439 0.1229 13 6 8.6381 -1.3136 -0.1117 14 7 7.8007 -0.3096 -0.1134 15 14 10.4717 -1.0006 -0.2831 16 1 11.1997 -2.2946 -0.2516 17 1 10.7382 -0.3134 -1.5722 18 1 10.9349 -0.1452 0.8389 19 7 5.9031 -1.8500 0.0042 20 1 -0.3632 -1.0278 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.9973 -1.8763 -0.8908 24 1 1.9973 -1.8769 0.8892 25 1 4.0242 -0.1227 -0.0006 26 1 3.0735 -3.6057 0.0006 27 1 6.9815 -5.0220 0.0176 28 1 8.1314 0.5976 -0.2041 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156780236.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:20 Heat of formation + Delta-G solvation = 8.425106 kcal Electronic energy + Delta-G solvation = -14272.370556 eV Core-core repulsion = 11709.560781 eV Total energy + Delta-G solvation = -2562.809775 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.58210 -38.71405 -34.99367 -33.84473 -31.74707 -30.80234 -29.23001 -26.04148 -25.78087 -22.39069 -21.12187 -19.71928 -17.51421 -16.91702 -15.65956 -15.53582 -15.36105 -15.07298 -14.48629 -14.38575 -13.60505 -13.17091 -12.98845 -12.62740 -12.37702 -12.06771 -11.46906 -11.35640 -11.28895 -10.69489 -10.34078 -9.91612 -9.69824 -9.65699 -9.37995 -8.36245 -7.38145 -6.74507 -6.43265 -4.65341 1.91980 2.70343 3.06147 3.10492 3.12252 3.27987 3.73250 3.89033 4.31015 4.72730 4.92958 5.19650 5.32541 5.54710 5.58332 5.77048 5.92611 6.05929 6.31123 6.51693 6.75534 7.04966 7.12643 7.44465 7.59757 7.94908 8.04929 8.45724 8.56657 8.85664 9.41155 10.01178 10.20558 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.034440 B = 0.007536 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.822134 B = 3714.439456 C = 4504.666681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.347 3.653 3 O -0.452 6.452 4 C 0.086 3.914 5 N -0.729 5.729 6 C 0.374 3.626 7 C -0.174 4.174 8 N -0.407 5.407 9 C -0.106 4.106 10 C 0.245 3.755 11 C -0.415 4.415 12 H 0.092 0.908 13 C 0.066 3.934 14 N -0.707 5.707 15 Si 0.911 3.089 16 H -0.258 1.258 17 H -0.272 1.272 18 H -0.273 1.273 19 N -0.508 5.508 20 H 0.084 0.916 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.405 0.595 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.837 1.390 -0.114 8.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.222 3.778 3 O -0.325 6.325 4 C -0.040 4.040 5 N -0.370 5.370 6 C 0.130 3.870 7 C -0.335 4.335 8 N -0.119 5.119 9 C -0.277 4.277 10 C 0.117 3.883 11 C -0.448 4.448 12 H 0.110 0.890 13 C -0.161 4.161 14 N -0.328 5.328 15 Si 0.735 3.265 16 H -0.181 1.181 17 H -0.197 1.197 18 H -0.198 1.198 19 N -0.234 5.234 20 H 0.103 0.897 21 H 0.111 0.889 22 H 0.111 0.889 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.243 0.757 26 H 0.137 0.863 27 H 0.148 0.852 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.747 2.082 -0.133 8.992 hybrid contribution 0.757 0.488 -0.089 0.905 sum -7.989 2.570 -0.221 8.396 Atomic orbital electron populations 1.22196 0.93726 1.04886 1.04787 1.24864 0.92240 0.90284 0.70372 1.90427 1.71809 1.34909 1.35383 1.21534 0.82958 0.96184 1.03345 1.43910 1.01636 1.07846 1.83564 1.19468 0.90192 0.86637 0.90682 1.21898 0.97939 0.88170 1.25529 1.67492 1.03897 1.34761 1.05702 1.22908 0.91370 0.96554 1.16862 1.19110 0.93646 0.87346 0.88214 1.19675 0.90632 0.93582 1.40864 0.89038 1.26162 1.00161 0.96061 0.93670 1.70122 1.35750 0.99667 1.27216 0.86208 0.82005 0.79638 0.78655 1.18145 1.19748 1.19790 1.69027 0.97784 1.32923 1.23673 0.89672 0.88932 0.88937 0.89223 0.89224 0.75707 0.86254 0.85195 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 10.33 36.01 0.37 -1.20 15 2 C 0.35 4.50 7.33 -29.04 -0.21 4.29 15 3 O -0.45 -7.80 16.41 6.00 0.10 -7.70 15 4 C 0.09 1.25 5.23 -5.19 -0.03 1.23 15 5 N -0.73 -15.12 5.69 -61.45 -0.35 -15.47 15 6 C 0.37 9.30 7.66 -155.02 -1.19 8.11 15 7 C -0.17 -4.16 10.50 -16.78 -0.18 -4.33 15 8 N -0.41 -10.41 10.47 -12.11 -0.13 -10.54 15 9 C -0.11 -2.78 10.97 -16.58 -0.18 -2.96 15 10 C 0.24 6.83 6.54 -84.83 -0.55 6.27 15 11 C -0.41 -11.00 9.15 -37.75 -0.35 -11.34 15 12 H 0.09 2.23 7.85 -52.49 -0.41 1.81 15 13 C 0.07 1.67 5.49 -17.33 -0.10 1.57 15 14 N -0.71 -18.83 11.51 55.55 0.64 -18.19 15 15 Si 0.91 18.36 29.56 -169.99 -5.03 13.33 15 16 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 19 N -0.51 -14.27 8.10 -10.14 -0.08 -14.35 15 20 H 0.08 0.48 8.00 -51.93 -0.42 0.06 15 21 H 0.09 0.66 8.14 -51.93 -0.42 0.24 15 22 H 0.09 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.09 1.16 7.94 -51.93 -0.41 0.75 15 24 H 0.09 1.16 7.93 -51.93 -0.41 0.75 15 25 H 0.41 8.98 7.56 -40.82 -0.31 8.67 15 26 H 0.12 2.42 6.70 -52.48 -0.35 2.07 15 27 H 0.13 3.08 8.06 -52.49 -0.42 2.65 15 28 H 0.27 6.63 8.29 -40.82 -0.34 6.29 15 LS Contribution 254.89 15.07 3.84 3.84 Total: -1.00 -32.48 254.89 -6.13 -38.61 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -2.71 Total: 8.83 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.41 Total: 1.64 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.08 Total: -58.56 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.10 Total: -7.70 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.48 -6.13 -38.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156780236.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.036 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds