Wall clock time and date at job start Sun Mar 29 2020 21:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20762 * 119.99814 * 2 1 4 4 C 1.50700 * 120.00405 * 180.02562 * 2 1 3 5 5 N 1.46507 * 109.47190 * 179.97438 * 4 2 1 6 6 C 1.38827 * 119.99710 * 179.72274 * 5 4 2 7 7 C 1.39957 * 119.97184 * 0.27578 * 6 5 4 8 8 N 1.32130 * 120.31943 * 179.97438 * 7 6 5 9 9 C 1.31930 * 120.27119 * 0.02562 * 8 7 6 10 10 C 1.40689 * 119.93145 * 359.97438 * 9 8 7 11 11 C 1.41273 * 120.15097 * 180.02562 * 10 9 8 12 12 H 1.07990 * 120.00488 * 353.81896 * 11 10 9 13 13 C 1.40059 * 119.99609 * 173.82520 * 11 10 9 14 14 N 1.30738 * 120.00052 * 6.32818 * 13 11 10 15 15 Si 1.86799 * 120.00168 * 186.32811 * 13 11 10 16 16 H 1.48502 * 109.46821 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46967 * 119.99936 * 15 13 11 18 18 H 1.48499 * 109.47194 * 239.99895 * 15 13 11 19 19 N 1.32241 * 119.96439 * 180.02562 * 6 5 4 20 20 H 1.09006 * 109.46532 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46913 * 299.99130 * 1 2 3 22 22 H 1.08998 * 109.47466 * 59.99873 * 1 2 3 23 23 H 1.09000 * 109.47436 * 59.99713 * 4 2 1 24 24 H 1.08997 * 109.46866 * 299.99453 * 4 2 1 25 25 H 0.97002 * 119.99486 * 0.02562 * 5 4 2 26 26 H 1.08004 * 119.84337 * 359.96078 * 7 6 5 27 27 H 1.07995 * 120.03802 * 179.97438 * 9 8 7 28 28 H 0.96993 * 119.99999 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 7 3.7010 -1.0372 -0.0011 6 6 4.6031 -2.0924 0.0042 7 6 4.1360 -3.4117 0.0041 8 7 4.9885 -4.4212 0.0085 9 6 6.2881 -4.1941 0.0136 10 6 6.7697 -2.8722 0.0137 11 6 8.1604 -2.6238 0.0186 12 1 8.8552 -3.4439 0.1229 13 6 8.6381 -1.3136 -0.1117 14 7 7.8007 -0.3096 -0.1134 15 14 10.4717 -1.0006 -0.2831 16 1 11.1997 -2.2946 -0.2516 17 1 10.7382 -0.3134 -1.5722 18 1 10.9349 -0.1452 0.8389 19 7 5.9031 -1.8500 0.0042 20 1 -0.3632 -1.0278 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.9973 -1.8763 -0.8908 24 1 1.9973 -1.8769 0.8892 25 1 4.0242 -0.1227 -0.0006 26 1 3.0735 -3.6057 0.0006 27 1 6.9815 -5.0220 0.0176 28 1 8.1314 0.5976 -0.2041 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156780236.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:19 Heat of formation + Delta-G solvation = -15.088156 kcal Electronic energy + Delta-G solvation = -14273.390167 eV Core-core repulsion = 11709.560781 eV Total energy + Delta-G solvation = -2563.829386 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.00040 -40.36059 -36.63754 -35.74280 -33.58959 -32.01054 -30.81508 -27.80816 -27.25723 -24.31806 -22.94737 -20.87451 -19.39318 -18.52353 -17.28171 -16.95556 -16.82921 -16.64775 -16.15706 -15.77004 -15.17445 -14.74404 -14.47683 -14.00611 -13.27981 -13.19755 -13.02278 -13.01003 -12.95860 -12.55457 -11.98182 -11.78136 -11.44213 -11.36425 -10.77796 -10.27081 -9.33511 -8.53702 -8.33813 -6.65293 0.82515 0.90702 1.24386 1.41034 1.54292 1.58352 2.20039 2.37068 2.82323 3.10674 3.89280 4.13756 4.20549 4.37513 4.42219 4.44797 4.61593 4.72764 4.73065 4.94464 5.13779 5.17060 5.21353 5.70639 6.08089 6.17546 6.46628 6.61268 6.66915 6.93380 7.45396 8.07276 8.34142 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.034440 B = 0.007536 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.822134 B = 3714.439456 C = 4504.666681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.355 3.645 3 O -0.504 6.504 4 C 0.072 3.928 5 N -0.730 5.730 6 C 0.362 3.638 7 C -0.171 4.171 8 N -0.414 5.414 9 C -0.132 4.132 10 C 0.215 3.785 11 C -0.442 4.442 12 H 0.104 0.896 13 C 0.020 3.980 14 N -0.748 5.748 15 Si 0.995 3.005 16 H -0.247 1.247 17 H -0.268 1.268 18 H -0.266 1.266 19 N -0.546 5.546 20 H 0.115 0.885 21 H 0.105 0.895 22 H 0.105 0.895 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.395 0.605 26 H 0.160 0.840 27 H 0.144 0.856 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 1.147 -0.207 9.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.234 3.766 3 O -0.381 6.381 4 C -0.053 4.053 5 N -0.367 5.367 6 C 0.117 3.883 7 C -0.333 4.333 8 N -0.125 5.125 9 C -0.301 4.301 10 C 0.087 3.913 11 C -0.475 4.475 12 H 0.122 0.878 13 C -0.203 4.203 14 N -0.369 5.369 15 Si 0.815 3.185 16 H -0.170 1.170 17 H -0.193 1.193 18 H -0.191 1.191 19 N -0.274 5.274 20 H 0.134 0.866 21 H 0.123 0.877 22 H 0.123 0.877 23 H 0.131 0.869 24 H 0.131 0.869 25 H 0.230 0.770 26 H 0.177 0.823 27 H 0.162 0.838 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.781 1.804 -0.222 9.948 hybrid contribution 0.883 0.565 -0.052 1.049 sum -8.898 2.369 -0.274 9.212 Atomic orbital electron populations 1.22205 0.88924 1.07350 1.05852 1.25425 0.94469 0.88564 0.68179 1.90431 1.73233 1.36252 1.38177 1.22072 0.79574 0.98202 1.05426 1.44169 1.03770 1.06397 1.82369 1.19862 0.90032 0.88273 0.90119 1.22470 0.99538 0.87446 1.23894 1.67532 1.03867 1.35339 1.05797 1.23068 0.92057 0.96516 1.18413 1.19558 0.94631 0.88152 0.88966 1.20110 0.90764 0.94949 1.41630 0.87835 1.27175 1.05450 0.95160 0.92467 1.70228 1.38380 1.00342 1.27934 0.84961 0.75086 0.79821 0.78663 1.16964 1.19285 1.19115 1.69007 0.99388 1.33766 1.25228 0.86611 0.87677 0.87686 0.86899 0.86891 0.76957 0.82303 0.83849 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 10.33 71.24 0.74 -1.51 15 2 C 0.35 8.53 7.33 29.10 0.21 8.74 15 3 O -0.50 -17.29 16.41 -1.46 -0.02 -17.31 15 4 C 0.07 1.91 5.23 85.63 0.45 2.36 15 5 N -0.73 -30.08 5.69 -348.34 -1.98 -32.06 15 6 C 0.36 18.07 7.66 133.37 1.02 19.09 15 7 C -0.17 -7.96 10.50 85.06 0.89 -7.07 15 8 N -0.41 -20.98 10.47 -192.23 -2.01 -22.99 15 9 C -0.13 -6.98 10.97 85.28 0.94 -6.05 15 10 C 0.21 12.28 6.54 40.15 0.26 12.54 15 11 C -0.44 -23.91 9.15 23.46 0.21 -23.69 15 12 H 0.10 5.10 7.85 -2.92 -0.02 5.07 15 13 C 0.02 1.04 5.49 85.30 0.47 1.51 15 14 N -0.75 -40.80 11.51 21.84 0.25 -40.55 15 15 Si 1.00 37.66 29.56 68.60 2.03 39.69 15 16 H -0.25 -8.79 7.11 99.48 0.71 -8.08 15 17 H -0.27 -9.87 7.11 99.48 0.71 -9.16 15 18 H -0.27 -9.73 7.11 99.48 0.71 -9.02 15 19 N -0.55 -31.49 8.10 -185.99 -1.51 -32.99 15 20 H 0.12 0.72 8.00 -2.38 -0.02 0.70 15 21 H 0.10 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.10 1.11 8.14 -2.39 -0.02 1.09 15 23 H 0.11 2.55 7.94 -2.39 -0.02 2.53 15 24 H 0.11 2.55 7.93 -2.39 -0.02 2.53 15 25 H 0.39 17.91 7.56 -92.71 -0.70 17.21 15 26 H 0.16 5.93 6.70 -2.91 -0.02 5.91 15 27 H 0.14 6.91 8.06 -2.91 -0.02 6.88 15 28 H 0.28 13.86 8.29 -92.71 -0.77 13.09 15 Total: -1.00 -72.88 254.89 2.44 -70.44 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.49 Total: 29.85 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 5.19 Total: 5.92 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -5.25 Total: -128.59 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.02 Total: -17.31 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -72.88 2.44 -70.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156780236.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.357 kcal (2) G-P(sol) polarization free energy of solvation -72.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds