Wall clock time and date at job start Sun Mar 29 2020 22:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47119 * 2 1 4 4 N 1.46507 * 109.47061 * 179.97438 * 3 2 1 5 5 C 1.46503 * 119.99922 * 269.99492 * 4 3 2 6 6 C 1.38820 * 120.00065 * 90.00343 * 4 3 2 7 7 C 1.39964 * 119.96925 * 4.71975 * 6 4 3 8 8 N 1.32134 * 120.31554 * 179.75513 * 7 6 4 9 9 C 1.31924 * 120.27268 * 0.52781 * 8 7 6 10 10 C 1.40679 * 119.93298 * 359.72849 * 9 8 7 11 11 C 1.41280 * 120.15607 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99729 * 353.84415 * 11 10 9 13 13 C 1.40054 * 119.99895 * 173.84364 * 11 10 9 14 14 N 1.30724 * 120.00288 * 6.35332 * 13 11 10 15 15 Si 1.86800 * 119.99788 * 186.35398 * 13 11 10 16 16 H 1.48500 * 109.47328 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47281 * 119.99983 * 15 13 11 18 18 H 1.48497 * 109.47298 * 240.00048 * 15 13 11 19 19 N 1.32237 * 119.97138 * 184.99800 * 6 4 3 20 20 H 1.08998 * 109.46883 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47157 * 299.99791 * 1 2 3 22 22 H 1.08998 * 109.47060 * 60.00319 * 1 2 3 23 23 H 1.09003 * 109.46986 * 120.00158 * 2 1 3 24 24 H 1.08997 * 109.47240 * 239.99452 * 2 1 3 25 25 H 1.08998 * 109.46894 * 299.99782 * 3 2 1 26 26 H 1.09005 * 109.47367 * 59.99892 * 3 2 1 27 27 H 1.09004 * 109.46525 * 90.00387 * 5 4 3 28 28 H 1.08994 * 109.47047 * 210.00297 * 5 4 3 29 29 H 1.09000 * 109.47507 * 330.00950 * 5 4 3 30 30 H 1.07997 * 119.84008 * 0.02562 * 7 6 4 31 31 H 1.07996 * 120.03219 * 179.75497 * 9 8 7 32 32 H 0.97003 * 120.00191 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2370 1.4428 1.2697 6 6 4.1997 1.4423 -1.2013 7 6 3.5033 1.5420 -2.4113 8 7 4.1579 1.5474 -3.5591 9 6 5.4733 1.4484 -3.5749 10 6 6.1839 1.3423 -2.3655 11 6 7.5926 1.2355 -2.3770 12 1 8.1189 1.1351 -3.3147 13 6 8.3066 1.2600 -1.1724 14 7 7.6662 1.2562 -0.0327 15 14 10.1741 1.2979 -1.1942 16 1 10.6529 1.2968 -2.5999 17 1 10.6523 2.5260 -0.5099 18 1 10.7018 0.1017 -0.4901 19 7 5.5183 1.3425 -1.2022 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.6767 1.9562 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 4.4186 0.4151 1.5845 28 1 5.1894 1.9566 1.1397 29 1 3.6476 1.9566 2.0290 30 1 2.4261 1.6192 -2.4066 31 1 6.0041 1.4493 -4.5155 32 1 8.1608 1.2728 0.8016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156878363.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:20 Heat of formation + Delta-G solvation = 24.372139 kcal Electronic energy + Delta-G solvation = -14991.063410 eV Core-core repulsion = 12564.778245 eV Total energy + Delta-G solvation = -2426.285165 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.87296 -38.04238 -35.81227 -34.48743 -33.13287 -31.30610 -28.83408 -27.35356 -25.98594 -23.84874 -22.97276 -21.65737 -19.41586 -18.08746 -17.30919 -16.84490 -16.57473 -15.79977 -15.56373 -15.19012 -14.70929 -14.38125 -13.81319 -13.40429 -13.30393 -13.04426 -12.95886 -12.77041 -12.59386 -12.30636 -12.19396 -11.94413 -11.64292 -11.55800 -11.32318 -11.19107 -10.13880 -9.28252 -8.33327 -8.27927 -6.61599 0.84480 1.27124 1.43183 1.55538 1.59128 2.22169 2.34235 2.84272 3.89675 3.96045 4.16194 4.19888 4.29393 4.42368 4.50574 4.59932 4.71952 4.77661 4.81387 4.95771 5.02111 5.12809 5.18874 5.21400 5.28032 5.32836 5.45787 5.74663 6.05608 6.35164 6.50178 6.70327 6.95387 7.48149 8.09106 8.36690 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038529 B = 0.008246 C = 0.007056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.558118 B = 3394.718945 C = 3967.496259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C 0.129 3.871 4 N -0.616 5.616 5 C 0.117 3.883 6 C 0.362 3.638 7 C -0.175 4.175 8 N -0.418 5.418 9 C -0.138 4.138 10 C 0.213 3.787 11 C -0.441 4.441 12 H 0.098 0.902 13 C 0.024 3.976 14 N -0.738 5.738 15 Si 0.993 3.007 16 H -0.253 1.253 17 H -0.267 1.267 18 H -0.266 1.266 19 N -0.531 5.531 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.034 0.966 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.027 0.973 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.823 -0.273 5.474 7.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.176 4.176 3 C 0.006 3.994 4 N -0.332 5.332 5 C -0.027 4.027 6 C 0.118 3.882 7 C -0.338 4.338 8 N -0.129 5.129 9 C -0.307 4.307 10 C 0.085 3.915 11 C -0.473 4.473 12 H 0.116 0.884 13 C -0.199 4.199 14 N -0.359 5.359 15 Si 0.813 3.187 16 H -0.176 1.176 17 H -0.191 1.191 18 H -0.191 1.191 19 N -0.259 5.259 20 H 0.079 0.921 21 H 0.091 0.909 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.935 -0.256 5.838 8.328 hybrid contribution 0.806 -0.138 -0.112 0.825 sum -5.129 -0.394 5.726 7.697 Atomic orbital electron populations 1.21647 0.92990 1.02391 1.02726 1.21907 0.97583 0.97159 1.00986 1.21648 0.77366 0.96994 1.03394 1.46330 1.05220 1.79386 1.02299 1.21328 0.97096 1.00012 0.84227 1.19870 0.91113 0.89910 0.87270 1.22396 0.99559 1.24065 0.87768 1.67506 1.09879 1.06123 1.29414 1.23036 0.90458 1.18778 0.98390 1.19579 0.95348 0.89042 0.87533 1.20039 0.90066 1.41799 0.95380 0.88351 1.27056 1.06168 0.92485 0.94234 1.70187 1.39340 1.27371 0.98953 0.84992 0.74936 0.78747 0.80046 1.17590 1.19145 1.19067 1.69077 1.04040 1.24863 1.27897 0.92144 0.90947 0.92299 0.92371 0.94689 0.90960 0.88342 0.95469 0.92732 0.89902 0.83581 0.84266 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.91 71.98 0.71 -2.05 16 2 C -0.14 -3.77 6.26 30.59 0.19 -3.58 16 3 C 0.13 3.81 5.29 86.38 0.46 4.27 16 4 N -0.62 -24.77 2.98 -728.29 -2.17 -26.95 16 5 C 0.12 4.37 10.47 127.77 1.34 5.70 16 6 C 0.36 18.23 7.37 133.38 0.98 19.21 16 7 C -0.18 -8.66 10.44 85.07 0.89 -7.77 16 8 N -0.42 -22.14 10.47 -192.24 -2.01 -24.16 16 9 C -0.14 -7.51 10.97 85.28 0.94 -6.57 16 10 C 0.21 12.16 6.54 40.15 0.26 12.42 16 11 C -0.44 -23.61 9.15 23.46 0.21 -23.39 16 12 H 0.10 4.88 7.85 -2.91 -0.02 4.85 16 13 C 0.02 1.20 5.49 85.30 0.47 1.67 16 14 N -0.74 -38.01 11.51 21.84 0.25 -37.76 16 15 Si 0.99 36.71 29.56 68.60 2.03 38.74 16 16 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 17 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 18 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 19 N -0.53 -29.94 6.89 -186.00 -1.28 -31.22 16 20 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 2.17 5.99 -2.39 -0.01 2.15 16 26 H 0.10 2.28 7.89 -2.38 -0.02 2.27 16 27 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 2.42 7.46 -2.39 -0.02 2.41 16 29 H 0.08 2.35 7.89 -2.39 -0.02 2.33 16 30 H 0.15 6.27 6.02 -2.91 -0.02 6.25 16 31 H 0.14 6.94 8.06 -2.91 -0.02 6.91 16 32 H 0.28 12.97 8.29 -92.71 -0.77 12.20 16 Total: -1.00 -65.22 272.94 4.36 -60.85 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 1.10 Total: 20.59 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 6.45 Total: -0.10 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -5.22 Total: -120.08 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -65.22 4.36 -60.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156878363.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.225 kcal (2) G-P(sol) polarization free energy of solvation -65.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds