Wall clock time and date at job start Sun Mar 29 2020 22:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47275 * 2 1 4 4 H 1.09006 * 109.46483 * 54.99969 * 3 2 1 5 5 C 1.53001 * 109.47084 * 174.99834 * 3 2 1 6 6 N 1.46497 * 109.47200 * 295.00446 * 3 2 1 7 7 C 1.38830 * 119.99923 * 154.99977 * 6 3 2 8 8 C 1.39960 * 119.96907 * 359.97170 * 7 6 3 9 9 N 1.32133 * 120.31818 * 180.02562 * 8 7 6 10 10 C 1.31938 * 120.26658 * 359.66502 * 9 8 7 11 11 C 1.40675 * 119.93216 * 0.61394 * 10 9 8 12 12 C 1.41282 * 120.15220 * 179.68253 * 11 10 9 13 13 H 1.07996 * 120.00233 * 8.60098 * 12 11 10 14 14 C 1.40053 * 119.99522 * 188.61102 * 12 11 10 15 15 N 1.30736 * 119.99580 * 195.66090 * 14 12 11 16 16 Si 1.86800 * 120.00448 * 15.65460 * 14 12 11 17 17 H 1.48504 * 109.47006 * 270.00393 * 16 14 12 18 18 H 1.48493 * 109.46938 * 30.00391 * 16 14 12 19 19 H 1.48507 * 109.46831 * 150.00421 * 16 14 12 20 20 N 1.32241 * 119.96807 * 179.97438 * 7 6 3 21 21 H 1.09001 * 109.46635 * 59.99378 * 1 2 3 22 22 H 1.08998 * 109.47189 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46849 * 299.99909 * 1 2 3 24 24 H 1.08996 * 109.47040 * 240.00693 * 2 1 3 25 25 H 1.08999 * 109.47268 * 119.99945 * 2 1 3 26 26 H 1.08995 * 109.47408 * 299.99909 * 5 3 2 27 27 H 1.09000 * 109.46923 * 60.00582 * 5 3 2 28 28 H 1.09005 * 109.46804 * 180.02562 * 5 3 2 29 29 H 0.97000 * 120.00010 * 334.99406 * 6 3 2 30 30 H 1.08001 * 119.84723 * 0.02677 * 8 7 6 31 31 H 1.07997 * 120.02980 * 180.29145 * 10 9 8 32 32 H 0.97004 * 120.00049 * 354.79440 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1258 6 7 1.6525 2.0975 -1.2517 7 6 1.5219 3.4788 -1.3009 8 6 1.7601 4.2448 -0.1540 9 7 1.6374 5.5599 -0.1928 10 6 1.2954 6.1630 -1.3154 11 6 1.0476 5.4032 -2.4731 12 6 0.6745 6.0437 -3.6759 13 1 0.7132 7.1205 -3.7488 14 6 0.2544 5.2821 -4.7735 15 7 0.2035 5.8224 -5.9629 16 14 -0.2332 3.4942 -4.5383 17 1 0.9612 2.6287 -4.7106 18 1 -0.7868 3.3077 -3.1731 19 1 -1.2614 3.1251 -5.5443 20 7 1.1724 4.0695 -2.4312 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8533 0.9570 1.0571 27 1 3.9995 0.9053 -0.7161 28 1 3.9282 2.4720 0.1262 29 1 1.4871 1.5662 -2.0462 30 1 2.0457 3.7588 0.7673 31 1 1.2007 7.2384 -1.3440 32 1 0.3836 6.7692 -6.0736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157239231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:42 Heat of formation + Delta-G solvation = -5.526986 kcal Electronic energy + Delta-G solvation = -15042.685774 eV Core-core repulsion = 12615.104086 eV Total energy + Delta-G solvation = -2427.581688 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.22896 -38.45164 -36.08054 -34.73258 -33.48875 -31.12105 -29.93932 -27.70020 -24.88444 -24.40322 -23.15970 -21.60910 -20.31320 -18.50605 -17.80631 -17.12781 -16.24561 -15.93364 -15.45274 -15.09711 -14.77729 -14.59159 -14.43100 -14.11612 -13.48484 -13.12607 -13.05416 -12.75466 -12.58137 -12.40340 -12.03890 -11.82834 -11.65791 -11.56461 -11.35030 -11.05160 -10.61633 -9.75077 -9.16562 -8.65922 -6.90118 0.60261 0.91405 1.51061 1.65232 1.93678 2.33262 2.39410 2.61674 3.58914 3.81070 4.01406 4.13060 4.17859 4.24500 4.32831 4.53673 4.68171 4.79126 4.82029 4.89665 4.98886 5.04738 5.12428 5.24749 5.31043 5.36848 5.45364 5.47383 5.86088 5.99136 6.37460 6.43303 6.77482 7.18887 7.63752 7.85086 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028997 B = 0.010408 C = 0.008379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.391948 B = 2689.565161 C = 3340.956557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.146 3.854 4 H 0.079 0.921 5 C -0.163 4.163 6 N -0.715 5.715 7 C 0.397 3.603 8 C -0.153 4.153 9 N -0.404 5.404 10 C -0.125 4.125 11 C 0.230 3.770 12 C -0.489 4.489 13 H 0.078 0.922 14 C 0.024 3.976 15 N -0.812 5.812 16 Si 1.178 2.822 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.319 1.319 20 N -0.613 5.613 21 H 0.034 0.966 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.397 0.603 30 H 0.162 0.838 31 H 0.141 0.859 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 -12.623 9.367 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.042 3.958 4 H 0.097 0.903 5 C -0.221 4.221 6 N -0.349 5.349 7 C 0.153 3.847 8 C -0.316 4.316 9 N -0.116 5.116 10 C -0.292 4.292 11 C 0.104 3.896 12 C -0.523 4.523 13 H 0.096 0.904 14 C -0.196 4.196 15 N -0.434 5.434 16 Si 1.008 2.992 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.251 1.251 20 N -0.346 5.346 21 H 0.053 0.947 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.122 0.878 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.232 0.768 30 H 0.179 0.821 31 H 0.158 0.842 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.899 -13.860 8.748 16.499 hybrid contribution 0.473 2.087 0.056 2.141 sum 2.373 -11.772 8.804 14.891 Atomic orbital electron populations 1.21780 0.95991 1.02098 1.01295 1.21789 0.95921 0.93734 1.04358 1.21250 0.95156 0.94116 0.85314 0.90287 1.22249 0.95027 1.01646 1.03208 1.44664 1.75075 1.01176 1.13958 1.19456 0.88066 0.86746 0.90414 1.22505 1.20859 0.89754 0.98523 1.67568 1.05510 1.10918 1.27558 1.22859 1.16534 0.99892 0.89941 1.19197 0.88706 0.87656 0.94044 1.20730 1.38735 0.95938 0.96861 0.90415 1.28447 0.89569 1.11238 0.90356 1.70621 1.33199 1.15865 1.23690 0.81671 0.75689 0.68731 0.73120 1.20788 1.21560 1.25092 1.67094 1.30250 1.10874 1.26423 0.94673 0.91021 0.92874 0.90858 0.87751 0.89021 0.92358 0.94287 0.76838 0.82131 0.84186 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.80 71.98 0.71 -2.33 16 2 C -0.12 -2.08 5.47 30.60 0.17 -1.92 16 3 C 0.15 3.46 2.26 44.99 0.10 3.57 16 4 H 0.08 1.93 6.46 -2.38 -0.02 1.92 16 5 C -0.16 -3.48 9.41 71.98 0.68 -2.80 16 6 N -0.71 -23.85 4.69 -324.08 -1.52 -25.37 16 7 C 0.40 17.28 7.64 133.37 1.02 18.30 16 8 C -0.15 -6.59 10.02 85.07 0.85 -5.73 16 9 N -0.40 -19.37 10.47 -192.23 -2.01 -21.39 16 10 C -0.12 -6.34 10.97 85.27 0.94 -5.41 16 11 C 0.23 12.37 6.26 40.15 0.25 12.62 16 12 C -0.49 -27.09 9.53 23.46 0.22 -26.86 16 13 H 0.08 4.31 8.06 -2.91 -0.02 4.28 16 14 C 0.02 1.28 5.51 85.30 0.47 1.75 16 15 N -0.81 -44.01 13.65 21.84 0.30 -43.71 16 16 Si 1.18 56.00 25.95 68.60 1.78 57.78 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 18 H -0.29 -13.97 6.53 99.48 0.65 -13.32 16 19 H -0.32 -14.60 7.11 99.48 0.71 -13.90 16 20 N -0.61 -31.02 5.23 -185.99 -0.97 -32.00 16 21 H 0.03 0.86 7.75 -2.39 -0.02 0.84 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.02 7.68 -2.38 -0.02 1.00 16 29 H 0.40 12.99 8.73 -92.71 -0.81 12.18 16 30 H 0.16 5.76 6.07 -2.91 -0.02 5.75 16 31 H 0.14 6.70 8.06 -2.91 -0.02 6.67 16 32 H 0.29 14.95 8.73 -92.71 -0.81 14.14 16 Total: -1.00 -62.22 268.00 3.19 -59.03 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.21 Total: 14.48 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 5.40 Total: -8.81 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -4.21 Total: -122.47 kcal Atomic # 14 Polarization: 56.00 SS G_CDS: 1.78 Total: 57.78 kcal Total: -62.22 3.19 -59.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157239231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.501 kcal (2) G-P(sol) polarization free energy of solvation -62.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds