Wall clock time and date at job start Sun Mar 29 2020 22:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46936 * 2 1 4 4 H 1.09002 * 109.47508 * 304.99609 * 3 2 1 5 5 C 1.53000 * 109.47145 * 185.00040 * 3 2 1 6 6 N 1.46497 * 109.47399 * 65.00155 * 3 2 1 7 7 C 1.38830 * 119.99923 * 205.00202 * 6 3 2 8 8 C 1.39960 * 119.96907 * 359.97170 * 7 6 3 9 9 N 1.32133 * 120.31818 * 180.02562 * 8 7 6 10 10 C 1.31938 * 120.26658 * 359.66502 * 9 8 7 11 11 C 1.40675 * 119.93216 * 0.61394 * 10 9 8 12 12 C 1.41282 * 120.15220 * 179.68253 * 11 10 9 13 13 H 1.07996 * 120.00233 * 8.60098 * 12 11 10 14 14 C 1.40053 * 119.99522 * 188.61102 * 12 11 10 15 15 N 1.30736 * 119.99580 * 195.66090 * 14 12 11 16 16 Si 1.86800 * 120.00448 * 15.65460 * 14 12 11 17 17 H 1.48504 * 109.47006 * 270.00393 * 16 14 12 18 18 H 1.48493 * 109.46938 * 30.00391 * 16 14 12 19 19 H 1.48504 * 109.47204 * 150.00406 * 16 14 12 20 20 N 1.32241 * 119.96807 * 179.97438 * 7 6 3 21 21 H 1.08999 * 109.46808 * 60.00261 * 1 2 3 22 22 H 1.09001 * 109.46669 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47145 * 299.99977 * 1 2 3 24 24 H 1.09000 * 109.47145 * 240.00023 * 2 1 3 25 25 H 1.09004 * 109.47246 * 119.99576 * 2 1 3 26 26 H 1.09004 * 109.47171 * 59.99940 * 5 3 2 27 27 H 1.09005 * 109.47326 * 179.97438 * 5 3 2 28 28 H 1.08999 * 109.47257 * 299.99924 * 5 3 2 29 29 H 0.97000 * 120.00010 * 24.99630 * 6 3 2 30 30 H 1.08001 * 119.84723 * 0.02677 * 8 7 6 31 31 H 1.07997 * 120.02980 * 180.29145 * 10 9 8 32 32 H 0.97002 * 120.00010 * 354.78773 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 1.5218 3.4788 1.3009 8 6 1.7610 4.2449 0.1543 9 7 1.6391 5.5600 0.1934 10 6 1.2843 6.1620 1.3126 11 6 1.0469 5.4031 2.4730 12 6 0.6733 6.0435 3.6757 13 1 0.4341 7.0966 3.6750 14 6 0.6134 5.3125 4.8688 15 7 -0.0137 5.8038 5.9055 16 14 1.4291 3.6356 4.9790 17 1 0.4586 2.5858 4.5775 18 1 2.6042 3.5964 4.0721 19 1 1.8728 3.3917 6.3750 20 7 1.1714 4.0693 2.4311 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8532 0.9570 -1.0571 27 1 3.9281 2.4721 -0.1262 28 1 3.9995 0.9054 0.7161 29 1 1.4871 1.5661 2.0462 30 1 2.0465 3.7589 -0.7669 31 1 1.1813 7.2367 1.3390 32 1 -0.3719 6.7047 5.8736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157239232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:49 Heat of formation + Delta-G solvation = 12.834811 kcal Electronic energy + Delta-G solvation = -15034.648219 eV Core-core repulsion = 12607.862758 eV Total energy + Delta-G solvation = -2426.785461 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.40041 -37.12311 -34.11687 -33.08994 -31.81101 -29.86093 -28.41078 -25.77501 -23.72490 -22.63728 -21.61861 -20.18274 -18.39571 -16.83243 -16.15285 -15.35654 -14.72498 -14.18780 -14.06140 -13.60921 -13.36530 -13.21479 -12.86453 -12.34904 -12.24922 -11.75229 -11.47508 -11.21453 -11.12848 -10.91319 -10.81370 -10.56658 -10.15284 -9.85168 -9.46835 -9.10859 -8.74334 -7.75963 -7.20012 -6.95913 -4.88074 2.53819 2.83260 3.46385 3.57359 3.76702 3.91743 4.30100 4.59753 4.79785 5.08964 5.14610 5.47430 5.54080 5.64956 5.70796 5.78140 5.90570 5.95202 5.96274 6.08217 6.09665 6.29704 6.31702 6.43396 6.61495 6.84861 7.33117 7.35007 7.67011 7.87451 8.13395 8.31246 8.57046 9.08276 9.54540 9.87082 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029058 B = 0.010145 C = 0.008474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.365984 B = 2759.200523 C = 3303.265095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.155 3.845 4 H 0.080 0.920 5 C -0.169 4.169 6 N -0.726 5.726 7 C 0.402 3.598 8 C -0.168 4.168 9 N -0.398 5.398 10 C -0.097 4.097 11 C 0.240 3.760 12 C -0.460 4.460 13 H 0.088 0.912 14 C 0.049 3.951 15 N -0.794 5.794 16 Si 1.144 2.856 17 H -0.286 1.286 18 H -0.279 1.279 19 H -0.326 1.326 20 N -0.595 5.595 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.394 0.606 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 -9.918 -7.288 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.049 3.951 4 H 0.098 0.902 5 C -0.227 4.227 6 N -0.362 5.362 7 C 0.161 3.839 8 C -0.329 4.329 9 N -0.108 5.108 10 C -0.268 4.268 11 C 0.114 3.886 12 C -0.494 4.494 13 H 0.106 0.894 14 C -0.175 4.175 15 N -0.415 5.415 16 Si 0.977 3.023 17 H -0.213 1.213 18 H -0.206 1.206 19 H -0.259 1.259 20 N -0.328 5.328 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.228 0.772 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.129 -11.106 -6.519 13.253 hybrid contribution -0.452 1.336 -0.653 1.554 sum 2.678 -9.770 -7.172 12.412 Atomic orbital electron populations 1.21762 0.95404 1.01170 1.02650 1.21801 0.96578 0.95813 1.02485 1.20857 0.94134 0.92595 0.87513 0.90166 1.22307 0.96383 1.02755 1.01302 1.44362 1.76710 1.03015 1.12122 1.19124 0.88974 0.84722 0.91112 1.21899 1.23328 0.90195 0.97431 1.67525 1.05615 1.09940 1.27763 1.22797 1.14327 0.99289 0.90356 1.19076 0.88073 0.86896 0.94526 1.20732 1.37971 0.98296 0.92353 0.89376 1.27746 0.91547 1.07148 0.91023 1.70609 1.20988 1.17270 1.32600 0.82112 0.77490 0.71682 0.71028 1.21311 1.20597 1.25877 1.67093 1.29916 1.11080 1.24672 0.92715 0.93006 0.92118 0.90822 0.91613 0.92256 0.91873 0.92620 0.77168 0.85369 0.84869 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.80 37.16 0.36 -1.38 16 2 C -0.13 -1.39 5.47 -26.73 -0.15 -1.54 16 3 C 0.16 2.13 2.26 -67.93 -0.15 1.97 16 4 H 0.08 1.14 6.46 -51.93 -0.34 0.80 16 5 C -0.17 -2.14 9.41 37.16 0.35 -1.79 16 6 N -0.73 -13.03 4.69 -53.79 -0.25 -13.28 16 7 C 0.40 9.10 7.64 -155.01 -1.18 7.91 16 8 C -0.17 -3.79 10.01 -16.78 -0.17 -3.95 16 9 N -0.40 -9.74 10.47 -12.11 -0.13 -9.86 16 10 C -0.10 -2.45 10.97 -16.59 -0.18 -2.63 16 11 C 0.24 6.37 6.26 -84.83 -0.53 5.84 16 12 C -0.46 -12.40 9.53 -37.75 -0.36 -12.76 16 13 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 14 C 0.05 1.30 5.51 -17.34 -0.10 1.21 16 15 N -0.79 -21.15 13.65 55.55 0.76 -20.39 16 16 Si 1.14 27.61 25.95 -169.99 -4.41 23.20 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.88 6.53 56.52 0.37 -6.51 16 19 H -0.33 -7.71 7.11 56.52 0.40 -7.31 16 20 N -0.60 -15.23 5.23 -10.14 -0.05 -15.28 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.82 7.75 -51.93 -0.40 0.41 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.93 7.67 -51.93 -0.40 0.54 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.39 6.91 8.73 -40.82 -0.36 6.55 16 30 H 0.13 2.52 6.07 -52.49 -0.32 2.20 16 31 H 0.13 3.11 8.06 -52.49 -0.42 2.69 16 32 H 0.29 7.27 8.73 -40.82 -0.36 6.91 16 LS Contribution 267.99 15.07 4.04 4.04 Total: -1.00 -29.12 267.99 -6.53 -35.66 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.38 Total: 3.03 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.11 Total: -7.11 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.33 Total: -58.81 kcal Atomic # 14 Polarization: 27.61 SS G_CDS: -4.41 Total: 23.20 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.12 -6.53 -35.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157239232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.491 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds