Wall clock time and date at job start Sun Mar 29 2020 22:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46936 * 2 1 4 4 H 1.09002 * 109.47508 * 304.99609 * 3 2 1 5 5 C 1.53000 * 109.47145 * 185.00040 * 3 2 1 6 6 N 1.46497 * 109.47399 * 65.00155 * 3 2 1 7 7 C 1.38830 * 119.99923 * 205.00202 * 6 3 2 8 8 C 1.39960 * 119.96907 * 359.97170 * 7 6 3 9 9 N 1.32133 * 120.31818 * 180.02562 * 8 7 6 10 10 C 1.31938 * 120.26658 * 359.66502 * 9 8 7 11 11 C 1.40675 * 119.93216 * 0.61394 * 10 9 8 12 12 C 1.41282 * 120.15220 * 179.68253 * 11 10 9 13 13 H 1.07996 * 120.00233 * 8.60098 * 12 11 10 14 14 C 1.40053 * 119.99522 * 188.61102 * 12 11 10 15 15 N 1.30736 * 119.99580 * 195.66090 * 14 12 11 16 16 Si 1.86800 * 120.00448 * 15.65460 * 14 12 11 17 17 H 1.48504 * 109.47006 * 270.00393 * 16 14 12 18 18 H 1.48493 * 109.46938 * 30.00391 * 16 14 12 19 19 H 1.48504 * 109.47204 * 150.00406 * 16 14 12 20 20 N 1.32241 * 119.96807 * 179.97438 * 7 6 3 21 21 H 1.08999 * 109.46808 * 60.00261 * 1 2 3 22 22 H 1.09001 * 109.46669 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47145 * 299.99977 * 1 2 3 24 24 H 1.09000 * 109.47145 * 240.00023 * 2 1 3 25 25 H 1.09004 * 109.47246 * 119.99576 * 2 1 3 26 26 H 1.09004 * 109.47171 * 59.99940 * 5 3 2 27 27 H 1.09005 * 109.47326 * 179.97438 * 5 3 2 28 28 H 1.08999 * 109.47257 * 299.99924 * 5 3 2 29 29 H 0.97000 * 120.00010 * 24.99630 * 6 3 2 30 30 H 1.08001 * 119.84723 * 0.02677 * 8 7 6 31 31 H 1.07997 * 120.02980 * 180.29145 * 10 9 8 32 32 H 0.97002 * 120.00010 * 354.78773 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 1.5218 3.4788 1.3009 8 6 1.7610 4.2449 0.1543 9 7 1.6391 5.5600 0.1934 10 6 1.2843 6.1620 1.3126 11 6 1.0469 5.4031 2.4730 12 6 0.6733 6.0435 3.6757 13 1 0.4341 7.0966 3.6750 14 6 0.6134 5.3125 4.8688 15 7 -0.0137 5.8038 5.9055 16 14 1.4291 3.6356 4.9790 17 1 0.4586 2.5858 4.5775 18 1 2.6042 3.5964 4.0721 19 1 1.8728 3.3917 6.3750 20 7 1.1714 4.0693 2.4311 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8532 0.9570 -1.0571 27 1 3.9281 2.4721 -0.1262 28 1 3.9995 0.9054 0.7161 29 1 1.4871 1.5661 2.0462 30 1 2.0465 3.7589 -0.7669 31 1 1.1813 7.2367 1.3390 32 1 -0.3719 6.7047 5.8736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157239232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:48 Heat of formation + Delta-G solvation = -5.525807 kcal Electronic energy + Delta-G solvation = -15035.444395 eV Core-core repulsion = 12607.862758 eV Total energy + Delta-G solvation = -2427.581637 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22856 -38.45204 -36.08015 -34.73338 -33.48824 -31.12275 -29.93816 -27.69958 -24.88426 -24.40503 -23.16019 -21.60812 -20.31362 -18.50689 -17.79934 -17.13356 -16.18932 -15.99483 -15.50817 -15.01236 -14.72421 -14.67618 -14.42685 -14.11348 -13.47163 -13.19446 -12.99832 -12.75322 -12.58664 -12.38142 -12.00955 -11.90092 -11.64370 -11.55943 -11.35568 -11.05312 -10.60570 -9.75244 -9.16237 -8.66037 -6.90077 0.60310 0.91427 1.51233 1.65406 1.93821 2.33295 2.39474 2.61840 3.58876 3.80877 4.01337 4.13686 4.17645 4.24244 4.32679 4.53598 4.68136 4.78906 4.81970 4.89725 4.98917 5.04690 5.11880 5.24593 5.31107 5.36954 5.45054 5.47364 5.86148 5.99178 6.37511 6.43361 6.77525 7.18925 7.63794 7.85161 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029058 B = 0.010145 C = 0.008474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.365984 B = 2759.200523 C = 3303.265095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.146 3.854 4 H 0.079 0.921 5 C -0.164 4.164 6 N -0.715 5.715 7 C 0.397 3.603 8 C -0.153 4.153 9 N -0.404 5.404 10 C -0.125 4.125 11 C 0.230 3.770 12 C -0.489 4.489 13 H 0.078 0.922 14 C 0.024 3.976 15 N -0.812 5.812 16 Si 1.178 2.822 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.319 1.319 20 N -0.613 5.613 21 H 0.052 0.948 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.104 0.896 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.397 0.603 30 H 0.162 0.838 31 H 0.141 0.859 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 -12.496 -8.972 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.042 3.958 4 H 0.097 0.903 5 C -0.222 4.222 6 N -0.349 5.349 7 C 0.153 3.847 8 C -0.316 4.316 9 N -0.116 5.116 10 C -0.292 4.292 11 C 0.104 3.896 12 C -0.523 4.523 13 H 0.096 0.904 14 C -0.196 4.196 15 N -0.434 5.434 16 Si 1.008 2.992 17 H -0.208 1.208 18 H -0.216 1.216 19 H -0.251 1.251 20 N -0.346 5.346 21 H 0.071 0.929 22 H 0.089 0.911 23 H 0.053 0.947 24 H 0.122 0.878 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.232 0.768 30 H 0.179 0.821 31 H 0.158 0.842 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.941 -13.684 -8.204 16.435 hybrid contribution -0.654 1.991 -0.355 2.125 sum 3.287 -11.694 -8.559 14.860 Atomic orbital electron populations 1.21768 0.96019 1.02028 1.01256 1.21785 0.95883 0.93746 1.04358 1.21246 0.95158 0.94097 0.85318 0.90275 1.22259 0.95039 1.01671 1.03251 1.44664 1.75076 1.01184 1.13953 1.19456 0.88103 0.86745 0.90380 1.22505 1.20823 0.89744 0.98570 1.67568 1.05628 1.10941 1.27419 1.22859 1.16084 0.99818 0.90466 1.19197 0.88000 0.87691 0.94718 1.20730 1.40231 0.98143 0.93160 0.90419 1.28446 0.91516 1.08781 0.90855 1.70621 1.22261 1.17595 1.32896 0.81666 0.76599 0.69934 0.70983 1.20757 1.21621 1.25090 1.67094 1.30596 1.10780 1.26165 0.92895 0.91124 0.94693 0.87755 0.90853 0.88986 0.94287 0.92310 0.76837 0.82131 0.84188 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.80 71.98 0.71 -2.32 16 2 C -0.12 -2.08 5.47 30.59 0.17 -1.91 16 3 C 0.15 3.47 2.26 44.99 0.10 3.57 16 4 H 0.08 1.93 6.46 -2.39 -0.02 1.92 16 5 C -0.16 -3.50 9.41 71.98 0.68 -2.83 16 6 N -0.71 -23.85 4.69 -324.10 -1.52 -25.37 16 7 C 0.40 17.28 7.64 133.37 1.02 18.30 16 8 C -0.15 -6.59 10.01 85.07 0.85 -5.73 16 9 N -0.40 -19.38 10.47 -192.23 -2.01 -21.39 16 10 C -0.12 -6.34 10.97 85.27 0.94 -5.41 16 11 C 0.23 12.37 6.26 40.15 0.25 12.62 16 12 C -0.49 -27.08 9.53 23.46 0.22 -26.86 16 13 H 0.08 4.30 8.06 -2.91 -0.02 4.28 16 14 C 0.02 1.29 5.51 85.30 0.47 1.76 16 15 N -0.81 -44.00 13.65 21.84 0.30 -43.70 16 16 Si 1.18 56.00 25.95 68.60 1.78 57.78 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.29 -14.01 6.53 99.48 0.65 -13.37 16 19 H -0.32 -14.60 7.11 99.48 0.71 -13.89 16 20 N -0.61 -31.02 5.23 -185.99 -0.97 -31.99 16 21 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.03 0.86 7.75 -2.39 -0.02 0.84 16 24 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.04 1.03 7.67 -2.38 -0.02 1.01 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.40 12.98 8.73 -92.71 -0.81 12.18 16 30 H 0.16 5.76 6.07 -2.91 -0.02 5.74 16 31 H 0.14 6.70 8.06 -2.91 -0.02 6.67 16 32 H 0.29 14.95 8.73 -92.71 -0.81 14.14 16 Total: -1.00 -62.21 267.99 3.19 -59.02 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.21 Total: 14.46 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 5.40 Total: -8.81 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -4.21 Total: -122.45 kcal Atomic # 14 Polarization: 56.00 SS G_CDS: 1.78 Total: 57.78 kcal Total: -62.21 3.19 -59.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157239232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.499 kcal (2) G-P(sol) polarization free energy of solvation -62.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds