Wall clock time and date at job start Sun Mar 29 2020 22:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38201 * 119.90196 * 2 1 4 4 N 1.32224 * 120.09891 * 180.02562 * 3 2 1 5 5 C 1.32684 * 119.91222 * 0.02562 * 4 3 2 6 6 N 1.39003 * 120.08963 * 180.02562 * 5 4 3 7 7 C 1.46499 * 119.99473 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47262 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47599 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47150 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00127 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99840 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99948 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99927 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47194 * 59.99976 * 14 12 10 16 16 H 1.48499 * 109.47303 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47251 * 299.99969 * 14 12 10 18 18 C 1.39293 * 119.81345 * 0.02562 * 5 4 3 19 19 N 1.31945 * 119.89362 * 359.97438 * 18 5 4 20 20 H 1.09001 * 109.46515 * 269.99997 * 1 2 3 21 21 H 1.08996 * 109.47089 * 29.98890 * 1 2 3 22 22 H 1.08991 * 109.47474 * 149.99693 * 1 2 3 23 23 H 1.07991 * 119.95435 * 0.02562 * 3 2 1 24 24 H 0.97000 * 120.00580 * 0.02562 * 6 5 4 25 25 H 1.09000 * 109.47441 * 299.99941 * 7 6 5 26 26 H 1.09004 * 109.47404 * 60.00352 * 7 6 5 27 27 H 1.09005 * 109.47309 * 300.00494 * 8 7 6 28 28 H 1.09001 * 109.47182 * 59.99444 * 8 7 6 29 29 H 1.08997 * 109.46584 * 299.99969 * 9 8 7 30 30 H 1.09001 * 109.46929 * 60.00159 * 9 8 7 31 31 H 0.96997 * 119.99479 * 179.97438 * 13 12 10 32 32 H 1.07998 * 120.04937 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1980 0.0000 4 7 3.5183 1.2026 -0.0005 5 6 4.1839 0.0548 -0.0015 6 7 5.5739 0.0552 -0.0015 7 6 6.3067 -1.2133 -0.0021 8 6 7.8109 -0.9334 -0.0026 9 6 8.5763 -2.2582 -0.0039 10 6 10.0579 -1.9823 -0.0038 11 1 10.4176 -0.9640 -0.0033 12 6 10.9541 -3.0300 -0.0042 13 7 10.5161 -4.2701 -0.0043 14 14 12.7905 -2.6882 -0.0048 15 1 13.1495 -1.9096 1.2077 16 1 13.5335 -3.9740 -0.0059 17 1 13.1487 -1.9092 -1.2173 18 6 3.4858 -1.1506 -0.0026 19 7 2.1663 -1.1464 -0.0021 20 1 -0.3632 0.0000 1.0277 21 1 -0.3633 0.8901 -0.5136 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6537 2.1319 0.0004 24 1 6.0587 0.8954 -0.0004 25 1 6.0436 -1.7854 0.8876 26 1 6.0436 -1.7846 -0.8924 27 1 8.0738 -0.3614 -0.8926 28 1 8.0744 -0.3619 0.8873 29 1 8.3135 -2.8303 0.8859 30 1 8.3127 -2.8292 -0.8941 31 1 11.1466 -5.0072 -0.0050 32 1 4.0237 -2.0871 -0.0039 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157637734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:22 Heat of formation + Delta-G solvation = 28.497591 kcal Electronic energy + Delta-G solvation = -13909.690215 eV Core-core repulsion = 11483.583943 eV Total energy + Delta-G solvation = -2426.106272 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.93862 -36.81863 -34.39418 -33.49249 -32.24993 -30.93311 -27.50339 -25.93923 -24.75884 -23.04637 -21.92534 -20.50200 -17.78038 -17.16591 -16.31046 -15.79645 -15.39171 -14.58548 -14.57247 -14.50144 -14.17232 -13.15045 -12.66708 -12.48020 -12.25966 -12.07682 -11.89079 -11.40269 -11.12942 -10.92817 -10.81150 -10.64725 -10.14679 -9.74975 -9.56167 -9.21523 -8.99807 -8.41971 -7.66184 -6.07080 -4.10252 1.03576 1.36785 3.15682 3.29561 3.34382 3.36736 3.84600 4.30984 4.40614 4.50474 4.61937 5.01441 5.14829 5.29027 5.47115 5.48504 5.50945 5.57246 5.64860 5.86304 5.95453 6.29076 6.46410 6.54462 6.85397 6.92972 7.53713 7.55443 7.64606 7.67196 7.90837 8.06817 8.32169 8.95854 9.54410 11.04169 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.088073 B = 0.004092 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.840362 B = 6840.328347 C = 7127.119154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.011 4.011 3 C 0.106 3.894 4 N -0.510 5.510 5 C 0.355 3.645 6 N -0.708 5.708 7 C 0.118 3.882 8 C -0.120 4.120 9 C 0.025 3.975 10 C -0.525 4.525 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.006 4.006 19 N -0.403 5.403 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.163 0.837 24 H 0.405 0.595 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.262 0.738 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.968 8.415 0.004 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.152 4.152 3 C -0.055 4.055 4 N -0.233 5.233 5 C 0.115 3.885 6 N -0.338 5.338 7 C -0.005 4.005 8 C -0.158 4.158 9 C -0.013 4.013 10 C -0.563 4.563 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.176 4.176 19 N -0.118 5.118 20 H 0.089 0.911 21 H 0.089 0.911 22 H 0.091 0.909 23 H 0.180 0.820 24 H 0.241 0.759 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.793 8.028 0.001 17.716 hybrid contribution 1.353 0.446 0.012 1.424 sum -14.440 8.474 0.013 16.743 Atomic orbital electron populations 1.20450 0.88366 1.03035 1.02547 1.21802 0.98011 0.89610 1.05783 1.23209 0.89276 0.98891 0.94152 1.67976 1.09119 1.27940 1.18275 1.19502 0.87005 0.90682 0.91307 1.44909 1.00792 1.10406 1.77712 1.21831 0.93526 0.83748 1.01380 1.21877 0.90364 1.02288 1.01301 1.19028 0.94306 0.90278 0.97649 1.21157 0.91241 0.92692 1.51219 0.92658 1.25018 0.99094 0.95107 0.95153 1.69947 1.34702 0.98252 1.50402 0.86629 0.85091 0.77470 0.78651 1.20207 1.21229 1.20213 1.23131 0.90362 0.97915 1.06151 1.68039 1.07994 1.29380 1.06344 0.91104 0.91060 0.90902 0.81989 0.75880 0.91724 0.91725 0.92478 0.92477 0.96212 0.96212 0.92815 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.19 36.01 0.37 -0.35 16 2 C -0.01 -0.13 6.78 -82.43 -0.56 -0.69 16 3 C 0.11 1.27 10.87 -17.40 -0.19 1.08 16 4 N -0.51 -7.43 10.53 -12.24 -0.13 -7.56 16 5 C 0.36 5.33 7.67 -154.72 -1.19 4.14 16 6 N -0.71 -10.32 5.73 -60.31 -0.35 -10.67 16 7 C 0.12 1.85 4.90 -4.04 -0.02 1.83 16 8 C -0.12 -2.25 5.27 -26.73 -0.14 -2.40 16 9 C 0.03 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 11 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 14 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 C -0.01 -0.08 10.49 -17.11 -0.18 -0.26 16 19 N -0.40 -5.86 10.41 -9.11 -0.09 -5.95 16 20 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 24 H 0.41 5.62 8.60 -40.82 -0.35 5.27 16 25 H 0.06 0.99 7.94 -51.93 -0.41 0.58 16 26 H 0.06 0.99 7.94 -51.93 -0.41 0.58 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.17 2.23 6.73 -52.49 -0.35 1.88 16 LS Contribution 278.77 15.07 4.20 4.20 Total: -1.00 -30.59 278.77 -7.56 -38.15 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.45 Total: 0.49 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -2.46 Total: -9.36 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.17 Total: -49.72 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.59 -7.56 -38.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.651 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds