Wall clock time and date at job start Sun Mar 29 2020 22:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38201 * 119.90196 * 2 1 4 4 N 1.32224 * 120.09891 * 180.02562 * 3 2 1 5 5 C 1.32684 * 119.91222 * 0.02562 * 4 3 2 6 6 N 1.39003 * 120.08963 * 180.02562 * 5 4 3 7 7 C 1.46499 * 119.99473 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47262 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47599 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47150 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00127 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99840 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99948 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99927 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47194 * 59.99976 * 14 12 10 16 16 H 1.48499 * 109.47303 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47251 * 299.99969 * 14 12 10 18 18 C 1.39293 * 119.81345 * 0.02562 * 5 4 3 19 19 N 1.31945 * 119.89362 * 359.97438 * 18 5 4 20 20 H 1.09001 * 109.46515 * 269.99997 * 1 2 3 21 21 H 1.08996 * 109.47089 * 29.98890 * 1 2 3 22 22 H 1.08991 * 109.47474 * 149.99693 * 1 2 3 23 23 H 1.07991 * 119.95435 * 0.02562 * 3 2 1 24 24 H 0.97000 * 120.00580 * 0.02562 * 6 5 4 25 25 H 1.09000 * 109.47441 * 299.99941 * 7 6 5 26 26 H 1.09004 * 109.47404 * 60.00352 * 7 6 5 27 27 H 1.09005 * 109.47309 * 300.00494 * 8 7 6 28 28 H 1.09001 * 109.47182 * 59.99444 * 8 7 6 29 29 H 1.08997 * 109.46584 * 299.99969 * 9 8 7 30 30 H 1.09001 * 109.46929 * 60.00159 * 9 8 7 31 31 H 0.96997 * 119.99479 * 179.97438 * 13 12 10 32 32 H 1.07998 * 120.04937 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1980 0.0000 4 7 3.5183 1.2026 -0.0005 5 6 4.1839 0.0548 -0.0015 6 7 5.5739 0.0552 -0.0015 7 6 6.3067 -1.2133 -0.0021 8 6 7.8109 -0.9334 -0.0026 9 6 8.5763 -2.2582 -0.0039 10 6 10.0579 -1.9823 -0.0038 11 1 10.4176 -0.9640 -0.0033 12 6 10.9541 -3.0300 -0.0042 13 7 10.5161 -4.2701 -0.0043 14 14 12.7905 -2.6882 -0.0048 15 1 13.1495 -1.9096 1.2077 16 1 13.5335 -3.9740 -0.0059 17 1 13.1487 -1.9092 -1.2173 18 6 3.4858 -1.1506 -0.0026 19 7 2.1663 -1.1464 -0.0021 20 1 -0.3632 0.0000 1.0277 21 1 -0.3633 0.8901 -0.5136 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6537 2.1319 0.0004 24 1 6.0587 0.8954 -0.0004 25 1 6.0436 -1.7854 0.8876 26 1 6.0436 -1.7846 -0.8924 27 1 8.0738 -0.3614 -0.8926 28 1 8.0744 -0.3619 0.8873 29 1 8.3135 -2.8303 0.8859 30 1 8.3127 -2.8292 -0.8941 31 1 11.1466 -5.0072 -0.0050 32 1 4.0237 -2.0871 -0.0039 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:22 Heat of formation + Delta-G solvation = 8.436935 kcal Electronic energy + Delta-G solvation = -13910.560110 eV Core-core repulsion = 11483.583943 eV Total energy + Delta-G solvation = -2426.976167 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.96789 -38.05510 -35.84482 -34.95448 -33.61835 -32.30602 -28.93678 -27.20425 -25.95480 -24.57451 -23.01310 -22.14400 -18.93329 -18.53564 -18.08692 -16.77727 -16.60496 -16.51545 -15.80207 -15.70318 -15.22863 -14.31410 -14.17761 -13.72004 -13.49695 -13.44301 -13.10241 -12.76532 -12.53589 -12.46428 -12.40597 -12.16557 -11.74726 -11.49137 -11.22666 -10.98129 -10.54779 -10.03113 -8.73560 -8.20561 -6.31211 0.02837 0.31841 1.41214 1.43352 1.51286 2.02005 2.41703 2.82552 3.13447 3.38612 3.54185 3.59994 4.07718 4.12971 4.19279 4.28988 4.50549 4.60518 4.89041 4.90963 4.92674 4.97788 5.13629 5.15474 5.47291 5.51594 5.71261 5.75210 5.83920 6.22931 6.44607 6.60232 6.85538 7.02139 7.38134 8.90960 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.088073 B = 0.004092 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.840362 B = 6840.328347 C = 7127.119154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.010 4.010 3 C 0.107 3.893 4 N -0.524 5.524 5 C 0.340 3.660 6 N -0.708 5.708 7 C 0.134 3.866 8 C -0.104 4.104 9 C 0.026 3.974 10 C -0.546 4.546 11 H 0.061 0.939 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.963 3.037 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.268 1.268 18 C -0.024 4.024 19 N -0.426 5.426 20 H 0.084 0.916 21 H 0.101 0.899 22 H 0.068 0.932 23 H 0.204 0.796 24 H 0.409 0.591 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.061 0.939 29 H -0.001 1.001 30 H -0.001 1.001 31 H 0.264 0.736 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.842 10.128 0.006 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 C -0.054 4.054 4 N -0.247 5.247 5 C 0.101 3.899 6 N -0.339 5.339 7 C 0.011 3.989 8 C -0.142 4.142 9 C -0.011 4.011 10 C -0.584 4.584 11 H 0.079 0.921 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.787 3.213 15 H -0.192 1.192 16 H -0.210 1.210 17 H -0.192 1.192 18 C -0.192 4.192 19 N -0.141 5.141 20 H 0.102 0.898 21 H 0.120 0.880 22 H 0.087 0.913 23 H 0.220 0.780 24 H 0.245 0.755 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.073 0.927 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -16.665 9.748 0.003 19.307 hybrid contribution 1.463 -0.043 0.013 1.463 sum -15.203 9.705 0.016 18.037 Atomic orbital electron populations 1.20589 0.85441 1.04375 1.03775 1.22533 0.99933 0.89091 1.03675 1.23909 0.88507 1.00528 0.92489 1.68005 1.10477 1.27788 1.18469 1.19523 0.86906 0.91096 0.92360 1.44633 1.00884 1.09833 1.78580 1.21479 0.91546 0.84362 1.01551 1.21577 0.91818 0.99136 1.01674 1.18920 0.94033 0.92627 0.95557 1.21660 0.92932 0.93045 1.50724 0.92079 1.25943 1.04137 0.94885 0.94769 1.70078 1.36356 0.99215 1.51517 0.85533 0.79121 0.77461 0.79141 1.19235 1.20966 1.19247 1.23173 0.90799 0.98023 1.07217 1.68077 1.07968 1.30847 1.07172 0.89776 0.88050 0.91273 0.77979 0.75509 0.91659 0.91661 0.92054 0.92051 0.98308 0.98303 0.92746 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.19 71.24 0.73 -0.41 16 2 C -0.01 -0.23 6.78 42.49 0.29 0.06 16 3 C 0.11 2.28 10.87 84.63 0.92 3.20 16 4 N -0.52 -14.44 10.53 -192.64 -2.03 -16.47 16 5 C 0.34 9.99 7.67 133.02 1.02 11.01 16 6 N -0.71 -20.36 5.73 -344.71 -1.97 -22.33 16 7 C 0.13 4.21 4.90 86.38 0.42 4.64 16 8 C -0.10 -3.91 5.27 30.59 0.16 -3.74 16 9 C 0.03 1.32 4.97 29.85 0.15 1.46 16 10 C -0.55 -30.15 9.11 25.60 0.23 -29.92 16 11 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 14 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 15 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 C -0.02 -0.71 10.49 84.93 0.89 0.18 16 19 N -0.43 -12.03 10.41 -182.75 -1.90 -13.93 16 20 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 21 H 0.10 0.77 8.08 -2.39 -0.02 0.75 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.20 2.47 8.06 -2.92 -0.02 2.45 16 24 H 0.41 11.05 8.60 -92.71 -0.80 10.25 16 25 H 0.07 2.03 7.94 -2.39 -0.02 2.01 16 26 H 0.07 2.03 7.94 -2.38 -0.02 2.01 16 27 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.17 4.60 6.73 -2.91 -0.02 4.58 16 Total: -1.00 -65.80 278.77 1.99 -63.81 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.31 Total: 11.81 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 5.27 Total: -13.02 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -5.62 Total: -108.16 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.80 1.99 -63.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.244 kcal (2) G-P(sol) polarization free energy of solvation -65.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds