Wall clock time and date at job start Sun Mar 29 2020 22:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38606 * 121.04468 * 2 1 4 4 C 1.38776 * 118.04483 * 180.02562 * 3 2 1 5 5 N 1.31818 * 120.01013 * 359.97438 * 4 3 2 6 6 N 1.28347 * 122.28574 * 359.71230 * 5 4 3 7 7 C 1.32516 * 122.06569 * 0.58986 * 6 5 4 8 8 N 1.39055 * 120.15966 * 179.69978 * 7 6 5 9 9 C 1.46499 * 119.99886 * 359.72124 * 8 7 6 10 10 C 1.52992 * 109.47267 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47277 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46913 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00408 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99553 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00389 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99821 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47361 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46957 * 119.99899 * 16 14 12 19 19 H 1.48501 * 109.47474 * 239.99801 * 16 14 12 20 20 H 1.08994 * 109.47511 * 269.97400 * 1 2 3 21 21 H 1.08999 * 109.47193 * 29.97849 * 1 2 3 22 22 H 1.09006 * 109.46963 * 149.97631 * 1 2 3 23 23 H 1.08006 * 120.97920 * 0.02562 * 3 2 1 24 24 H 1.07998 * 119.98937 * 180.02562 * 4 3 2 25 25 H 0.96999 * 120.00130 * 179.72588 * 8 7 6 26 26 H 1.09004 * 109.47024 * 300.00621 * 9 8 7 27 27 H 1.09005 * 109.47136 * 60.00237 * 9 8 7 28 28 H 1.09004 * 109.47330 * 300.00096 * 10 9 8 29 29 H 1.09005 * 109.47124 * 59.99892 * 10 9 8 30 30 H 1.08997 * 109.46785 * 299.99511 * 11 10 9 31 31 H 1.08992 * 109.47085 * 59.99748 * 11 10 9 32 32 H 0.97005 * 120.00528 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2218 1.1875 0.0000 4 6 3.6076 1.1149 -0.0005 5 7 4.2063 -0.0595 -0.0005 6 7 3.5509 -1.1630 0.0054 7 6 2.2262 -1.1946 0.0004 8 7 1.5563 -2.4132 0.0009 9 6 2.3154 -3.6662 0.0008 10 6 1.3459 -4.8497 0.0007 11 6 2.1386 -6.1584 0.0013 12 6 1.1836 -7.3242 0.0006 13 1 0.1179 -7.1492 0.0003 14 6 1.6705 -8.6141 0.0004 15 7 2.9682 -8.8272 0.0013 16 14 0.4867 -10.0592 0.0003 17 1 -0.9101 -9.5549 -0.0002 18 1 0.7145 -10.8855 -1.2124 19 1 0.7146 -10.8859 1.2126 20 1 -0.3634 -0.0005 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.7151 2.1414 0.0004 24 1 4.1956 2.0208 -0.0001 25 1 0.5866 -2.4336 0.0012 26 1 2.9428 -3.7108 -0.8894 27 1 2.9435 -3.7106 0.8906 28 1 0.7181 -4.8053 0.8908 29 1 0.7181 -4.8051 -0.8892 30 1 2.7665 -6.2032 -0.8885 31 1 2.7660 -6.2027 0.8914 32 1 3.3108 -9.7348 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157637986.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:19 Heat of formation + Delta-G solvation = 38.925375 kcal Electronic energy + Delta-G solvation = -14091.894705 eV Core-core repulsion = 11666.240616 eV Total energy + Delta-G solvation = -2425.654089 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.87717 -36.71660 -34.47298 -33.57347 -31.96597 -30.17584 -28.21765 -26.60673 -23.91212 -22.81315 -22.25121 -20.40808 -17.58255 -17.35466 -16.27021 -15.85695 -15.40299 -14.62491 -14.45840 -14.37152 -13.68723 -13.30905 -13.05795 -12.60927 -12.27406 -12.19471 -11.78712 -11.00457 -10.93984 -10.71190 -10.54407 -10.53524 -9.90947 -9.77649 -9.51958 -9.40914 -9.11342 -8.37527 -7.83769 -6.01788 -4.04968 0.88378 1.31108 3.25292 3.29830 3.37418 3.40917 3.76266 4.34223 4.44208 4.52898 4.61736 4.84593 5.00279 5.24667 5.28891 5.34045 5.63717 5.68045 5.79544 5.83233 5.88432 6.17120 6.22087 6.60480 6.66213 6.96155 7.22792 7.60012 7.64057 7.76471 7.97079 8.38012 9.01835 9.03766 9.59291 11.09498 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.060192 B = 0.004604 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.067347 B = 6080.477439 C = 6514.493228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.153 4.153 3 C -0.087 4.087 4 C -0.026 4.026 5 N -0.207 5.207 6 N -0.303 5.303 7 C 0.346 3.654 8 N -0.707 5.707 9 C 0.124 3.876 10 C -0.121 4.121 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.143 0.857 24 H 0.164 0.836 25 H 0.406 0.594 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.078 19.279 0.019 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.169 4.169 3 C -0.115 4.115 4 C -0.196 4.196 5 N -0.048 5.048 6 N -0.155 5.155 7 C 0.103 3.897 8 N -0.340 5.340 9 C 0.001 3.999 10 C -0.160 4.160 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.095 0.905 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.161 0.839 24 H 0.181 0.819 25 H 0.244 0.756 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.425 18.058 0.022 18.380 hybrid contribution -2.267 0.018 -0.007 2.267 sum -5.692 18.077 0.014 18.952 Atomic orbital electron populations 1.20645 0.89581 1.03337 1.02880 1.20573 0.97818 0.92523 1.06001 1.22017 0.94911 0.98337 0.96253 1.23897 0.93309 0.98433 1.03950 1.72750 1.31272 0.94918 1.05908 1.73094 1.04264 1.19378 1.18779 1.20053 0.91434 0.87014 0.91176 1.44918 1.08531 1.02564 1.77967 1.21678 0.94930 0.81143 1.02100 1.21897 0.98125 0.95184 1.00747 1.19025 0.95301 0.89265 0.97749 1.21236 0.93007 0.90945 1.50886 0.92643 1.25026 0.95074 0.99063 0.95274 1.69975 1.11724 1.20910 1.50587 0.86535 0.81211 0.82609 0.77618 1.19788 1.20987 1.20980 0.90519 0.90723 0.91204 0.83934 0.81877 0.75607 0.91730 0.91695 0.92824 0.92835 0.96195 0.96187 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.65 36.00 0.35 -0.51 16 2 C -0.15 -1.76 5.95 -104.04 -0.62 -2.38 16 3 C -0.09 -0.86 9.92 -39.25 -0.39 -1.25 16 4 C -0.03 -0.31 11.31 -17.36 -0.20 -0.50 16 5 N -0.21 -3.30 11.49 30.56 0.35 -2.95 16 6 N -0.30 -5.31 10.75 31.23 0.34 -4.97 16 7 C 0.35 5.22 7.55 -154.76 -1.17 4.05 16 8 N -0.71 -10.43 5.63 -60.30 -0.34 -10.77 16 9 C 0.12 2.21 5.72 -4.05 -0.02 2.19 16 10 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 11 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 12 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 16 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 21 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 22 H 0.07 0.55 6.67 -51.93 -0.35 0.20 16 23 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 24 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 25 H 0.41 4.97 6.58 -40.82 -0.27 4.70 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 277.43 15.07 4.18 4.18 Total: -1.00 -32.40 277.43 -6.88 -39.28 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.38 Total: -1.23 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -2.74 Total: -13.88 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 1.08 Total: -44.86 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.40 -6.88 -39.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637986.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.203 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds