Wall clock time and date at job start Sun Mar 29 2020 22:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38606 * 121.04468 * 2 1 4 4 C 1.38776 * 118.04483 * 180.02562 * 3 2 1 5 5 N 1.31818 * 120.01013 * 359.97438 * 4 3 2 6 6 N 1.28347 * 122.28574 * 359.71230 * 5 4 3 7 7 C 1.32516 * 122.06569 * 0.58986 * 6 5 4 8 8 N 1.39055 * 120.15966 * 179.69978 * 7 6 5 9 9 C 1.46499 * 119.99886 * 359.72124 * 8 7 6 10 10 C 1.52992 * 109.47267 * 180.02562 * 9 8 7 11 11 C 1.53005 * 109.47277 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46913 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00408 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99553 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00389 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99821 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47361 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.46957 * 119.99899 * 16 14 12 19 19 H 1.48501 * 109.47474 * 239.99801 * 16 14 12 20 20 H 1.08994 * 109.47511 * 269.97400 * 1 2 3 21 21 H 1.08999 * 109.47193 * 29.97849 * 1 2 3 22 22 H 1.09006 * 109.46963 * 149.97631 * 1 2 3 23 23 H 1.08006 * 120.97920 * 0.02562 * 3 2 1 24 24 H 1.07998 * 119.98937 * 180.02562 * 4 3 2 25 25 H 0.96999 * 120.00130 * 179.72588 * 8 7 6 26 26 H 1.09004 * 109.47024 * 300.00621 * 9 8 7 27 27 H 1.09005 * 109.47136 * 60.00237 * 9 8 7 28 28 H 1.09004 * 109.47330 * 300.00096 * 10 9 8 29 29 H 1.09005 * 109.47124 * 59.99892 * 10 9 8 30 30 H 1.08997 * 109.46785 * 299.99511 * 11 10 9 31 31 H 1.08992 * 109.47085 * 59.99748 * 11 10 9 32 32 H 0.97005 * 120.00528 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2218 1.1875 0.0000 4 6 3.6076 1.1149 -0.0005 5 7 4.2063 -0.0595 -0.0005 6 7 3.5509 -1.1630 0.0054 7 6 2.2262 -1.1946 0.0004 8 7 1.5563 -2.4132 0.0009 9 6 2.3154 -3.6662 0.0008 10 6 1.3459 -4.8497 0.0007 11 6 2.1386 -6.1584 0.0013 12 6 1.1836 -7.3242 0.0006 13 1 0.1179 -7.1492 0.0003 14 6 1.6705 -8.6141 0.0004 15 7 2.9682 -8.8272 0.0013 16 14 0.4867 -10.0592 0.0003 17 1 -0.9101 -9.5549 -0.0002 18 1 0.7145 -10.8855 -1.2124 19 1 0.7146 -10.8859 1.2126 20 1 -0.3634 -0.0005 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.7151 2.1414 0.0004 24 1 4.1956 2.0208 -0.0001 25 1 0.5866 -2.4336 0.0012 26 1 2.9428 -3.7108 -0.8894 27 1 2.9435 -3.7106 0.8906 28 1 0.7181 -4.8053 0.8908 29 1 0.7181 -4.8051 -0.8892 30 1 2.7665 -6.2032 -0.8885 31 1 2.7660 -6.2027 0.8914 32 1 3.3108 -9.7348 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637986.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:19 Heat of formation + Delta-G solvation = 17.516165 kcal Electronic energy + Delta-G solvation = -14092.823078 eV Core-core repulsion = 11666.240616 eV Total energy + Delta-G solvation = -2426.582462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.88023 -37.99928 -35.87069 -34.98232 -33.61157 -31.53854 -29.06515 -28.33333 -25.45528 -23.74886 -23.63783 -22.12054 -18.78393 -18.52465 -18.22195 -16.70296 -16.63669 -16.49843 -15.78383 -15.73675 -14.71770 -14.30018 -13.97762 -13.86322 -13.76503 -13.70873 -13.26579 -12.84375 -12.53908 -12.33162 -12.03266 -11.90644 -11.46959 -11.42482 -11.17998 -10.76196 -10.57039 -10.42536 -8.98766 -8.20187 -6.32096 -0.01516 0.35171 1.41163 1.41496 1.54762 2.12664 2.41921 2.76840 3.13515 3.41951 3.69981 3.78742 4.03532 4.16609 4.21372 4.25128 4.54406 4.61663 4.75864 4.86282 4.94378 5.02046 5.06077 5.14481 5.16696 5.43967 5.50143 5.69091 5.82938 5.98255 6.22243 6.57394 6.85361 7.37652 8.02075 8.92236 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.060192 B = 0.004604 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.067347 B = 6080.477439 C = 6514.493228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.148 4.148 3 C -0.077 4.077 4 C -0.016 4.016 5 N -0.258 5.258 6 N -0.358 5.358 7 C 0.323 3.677 8 N -0.705 5.705 9 C 0.145 3.855 10 C -0.102 4.102 11 C 0.024 3.976 12 C -0.541 4.541 13 H 0.066 0.934 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.258 1.258 18 H -0.279 1.279 19 H -0.279 1.279 20 H 0.089 0.911 21 H 0.102 0.898 22 H 0.069 0.931 23 H 0.193 0.807 24 H 0.200 0.800 25 H 0.419 0.581 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.065 0.935 30 H -0.008 1.008 31 H -0.008 1.008 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 21.255 0.013 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.163 4.163 3 C -0.105 4.105 4 C -0.187 4.187 5 N -0.097 5.097 6 N -0.208 5.208 7 C 0.080 3.920 8 N -0.341 5.341 9 C 0.020 3.980 10 C -0.140 4.140 11 C -0.013 4.013 12 C -0.579 4.579 13 H 0.084 0.916 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.793 3.207 17 H -0.182 1.182 18 H -0.205 1.205 19 H -0.205 1.205 20 H 0.108 0.892 21 H 0.121 0.879 22 H 0.088 0.912 23 H 0.210 0.790 24 H 0.217 0.783 25 H 0.259 0.741 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.058 20.066 0.016 20.961 hybrid contribution -1.409 -0.412 -0.005 1.468 sum -7.467 19.655 0.012 21.025 Atomic orbital electron populations 1.20771 0.86769 1.04721 1.04071 1.21038 0.99772 0.91492 1.04010 1.22574 0.94156 0.99782 0.94006 1.24616 0.94968 0.98220 1.00945 1.72643 1.32452 0.95962 1.08647 1.72924 1.05965 1.21015 1.20898 1.20318 0.91373 0.88059 0.92280 1.44537 1.08781 1.01515 1.79273 1.21133 0.94233 0.82314 1.00297 1.21591 0.97691 0.92856 1.01839 1.18931 0.95077 0.92264 0.95056 1.21700 0.93818 0.91899 1.50503 0.91580 1.26034 0.96876 1.02463 0.94713 1.70123 1.13985 1.21764 1.51669 0.85349 0.79249 0.78454 0.77668 1.18189 1.20519 1.20511 0.89240 0.87949 0.91249 0.78980 0.78311 0.74093 0.93691 0.93654 0.91589 0.91597 0.98989 0.98976 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.65 71.23 0.69 -0.60 16 2 C -0.15 -3.00 5.95 -19.49 -0.12 -3.12 16 3 C -0.08 -1.23 9.92 22.49 0.22 -1.01 16 4 C -0.02 -0.34 11.31 84.82 0.96 0.61 16 5 N -0.26 -8.29 11.49 -57.21 -0.66 -8.95 16 6 N -0.36 -12.96 10.75 -55.11 -0.59 -13.55 16 7 C 0.32 9.65 7.55 133.08 1.00 10.66 16 8 N -0.70 -20.75 5.63 -344.68 -1.94 -22.70 16 9 C 0.14 5.37 5.72 86.38 0.49 5.87 16 10 C -0.10 -4.07 5.27 30.59 0.16 -3.91 16 11 C 0.02 1.30 4.97 29.85 0.15 1.45 16 12 C -0.54 -30.68 9.11 25.60 0.23 -30.44 16 13 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 14 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 15 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 16 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 17 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 21 H 0.10 0.71 8.11 -2.39 -0.02 0.69 16 22 H 0.07 0.87 6.67 -2.38 -0.02 0.86 16 23 H 0.19 1.14 8.06 -2.91 -0.02 1.11 16 24 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16 25 H 0.42 9.74 6.58 -92.71 -0.61 9.13 16 26 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -73.85 277.43 3.88 -69.98 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.50 Total: 6.78 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 4.26 Total: -20.21 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -2.91 Total: -102.75 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -73.85 3.88 -69.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637986.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.493 kcal (2) G-P(sol) polarization free energy of solvation -73.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds