Wall clock time and date at job start Sun Mar 29 2020 22:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00209 * 2 1 4 4 H 1.48504 * 109.47126 * 240.00135 * 3 2 1 5 5 H 1.48500 * 109.47033 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47410 * 119.99627 * 3 2 1 7 7 C 1.37880 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99644 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99814 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46936 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47166 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47178 * 180.02562 * 11 10 9 13 13 C 1.39028 * 119.99880 * 180.02562 * 12 11 10 14 14 C 1.38823 * 119.66677 * 359.97438 * 13 12 11 15 15 C 1.39131 * 119.00598 * 179.75010 * 14 13 12 16 16 N 1.39196 * 120.82563 * 180.23352 * 15 14 13 17 17 C 1.39694 * 118.35147 * 0.25790 * 15 14 13 18 18 C 1.37738 * 119.23518 * 359.97438 * 17 15 14 19 19 N 1.32088 * 120.93155 * 359.97438 * 18 17 15 20 20 H 0.96999 * 120.00020 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47691 * 59.99914 * 9 7 2 22 22 H 1.09002 * 109.47477 * 299.99714 * 9 7 2 23 23 H 1.08999 * 109.47489 * 60.00035 * 10 9 7 24 24 H 1.09005 * 109.46823 * 299.99419 * 10 9 7 25 25 H 1.08999 * 109.47000 * 59.99598 * 11 10 9 26 26 H 1.08997 * 109.46816 * 299.99661 * 11 10 9 27 27 H 0.96999 * 119.99736 * 359.97438 * 12 11 10 28 28 H 1.08002 * 120.50036 * 0.03377 * 14 13 12 29 29 H 0.97006 * 119.99837 * 0.02562 * 16 15 14 30 30 H 0.96998 * 120.00410 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.38034 * 179.97438 * 17 15 14 32 32 H 1.07992 * 119.53064 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1007 0.0005 13 6 1.9687 -7.4114 -0.0005 14 6 0.6024 -7.6571 -0.0015 15 6 0.1537 -8.9741 -0.0077 16 7 -1.2077 -9.2638 -0.0138 17 6 1.1035 -9.9985 -0.0072 18 6 2.4423 -9.6746 -0.0011 19 7 2.8357 -8.4137 0.0037 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8719 -3.6044 0.8905 24 1 2.8718 -3.6043 -0.8896 25 1 0.8538 -5.0446 -0.8903 26 1 0.8533 -5.0451 0.8897 27 1 3.3858 -5.9234 0.0008 28 1 -0.1018 -6.8382 -0.0021 29 1 -1.8570 -8.5430 -0.0141 30 1 -1.5073 -10.1863 -0.0178 31 1 0.7917 -11.0324 -0.0116 32 1 3.1806 -10.4627 -0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157638065.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:41 Heat of formation + Delta-G solvation = 18.578615 kcal Electronic energy + Delta-G solvation = -13965.549842 eV Core-core repulsion = 11539.013451 eV Total energy + Delta-G solvation = -2426.536391 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.95675 -36.46413 -35.09795 -33.49751 -31.52273 -29.61243 -29.13632 -26.38014 -23.71607 -22.50330 -21.70414 -20.31039 -17.63231 -17.35194 -16.33044 -15.73912 -15.23816 -14.93766 -14.74125 -14.37437 -13.80822 -13.65952 -13.61254 -12.30380 -12.14695 -11.78340 -11.59820 -11.46677 -10.90136 -10.69063 -10.60717 -10.01675 -9.59981 -9.49454 -9.23096 -9.15050 -8.38237 -8.02505 -7.45619 -6.03542 -4.06183 1.60069 1.87181 3.32197 3.36494 3.38662 3.47449 3.78291 4.21955 4.43962 4.85609 5.29002 5.32594 5.39425 5.48425 5.69439 5.72466 5.77917 6.05559 6.09032 6.26450 6.53934 6.58413 6.73732 6.96885 7.22134 7.43467 7.60686 7.62396 7.73399 7.93339 7.95118 8.37043 8.54328 9.00072 9.58154 11.07813 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059229 B = 0.004425 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.631840 B = 6326.448197 C = 6773.327170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.125 3.875 12 N -0.719 5.719 13 C 0.439 3.561 14 C -0.321 4.321 15 C 0.284 3.716 16 N -0.868 5.868 17 C -0.316 4.316 18 C 0.182 3.818 19 N -0.586 5.586 20 H 0.261 0.739 21 H 0.018 0.982 22 H 0.018 0.982 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.403 0.597 28 H 0.129 0.871 29 H 0.400 0.600 30 H 0.398 0.602 31 H 0.122 0.878 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 -17.936 -0.032 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.002 3.998 12 N -0.349 5.349 13 C 0.203 3.797 14 C -0.351 4.351 15 C 0.171 3.829 16 N -0.406 5.406 17 C -0.344 4.344 18 C 0.024 3.976 19 N -0.307 5.307 20 H 0.071 0.929 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.238 0.762 28 H 0.146 0.854 29 H 0.229 0.771 30 H 0.226 0.774 31 H 0.140 0.860 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.152 -17.408 -0.025 17.408 hybrid contribution -0.584 0.726 -0.008 0.932 sum -0.737 -16.681 -0.033 16.698 Atomic orbital electron populations 1.69947 1.06069 1.26804 1.50639 1.25016 0.94859 0.99295 0.95212 0.86636 0.79572 0.83009 0.78659 1.20209 1.21268 1.20213 1.21179 0.93041 0.90942 1.50930 0.92652 1.19022 0.93820 0.90913 0.97496 1.21873 0.99823 0.93035 1.01169 1.21659 0.91979 0.85361 1.00839 1.44856 1.09787 1.01445 1.78795 1.18115 0.88211 0.85847 0.87500 1.20733 0.95418 0.95666 1.23330 1.17676 0.84464 0.92856 0.87915 1.42385 1.03668 1.10640 1.83915 1.21169 0.93836 0.98338 1.21091 1.22013 0.93499 0.92066 0.90058 1.67234 1.38163 0.99584 1.25749 0.92892 0.96343 0.96331 0.92588 0.92597 0.92319 0.92325 0.76206 0.85353 0.77125 0.77355 0.86034 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 11 C 0.13 2.13 4.89 -4.04 -0.02 2.11 16 12 N -0.72 -11.56 5.73 -60.47 -0.35 -11.91 16 13 C 0.44 7.08 7.65 -155.01 -1.19 5.90 16 14 C -0.32 -4.71 9.21 -39.03 -0.36 -5.07 16 15 C 0.28 3.54 6.81 -83.64 -0.57 2.97 16 16 N -0.87 -7.62 9.08 32.51 0.30 -7.33 16 17 C -0.32 -3.69 9.99 -39.22 -0.39 -4.08 16 18 C 0.18 2.32 11.16 -17.62 -0.20 2.12 16 19 N -0.59 -9.18 10.39 -12.53 -0.13 -9.31 16 20 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.06 1.00 7.92 -51.93 -0.41 0.59 16 26 H 0.06 1.00 7.93 -51.93 -0.41 0.58 16 27 H 0.40 6.21 8.60 -40.82 -0.35 5.86 16 28 H 0.13 1.83 6.70 -52.49 -0.35 1.48 16 29 H 0.40 3.08 8.86 -40.82 -0.36 2.72 16 30 H 0.40 2.53 8.86 -40.82 -0.36 2.17 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 277.46 15.07 4.18 4.18 Total: -1.00 -31.32 277.46 -8.02 -39.34 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.33 Total: 5.91 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -3.41 Total: -11.50 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.55 Total: -54.43 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.32 -8.02 -39.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638065.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.923 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds