Wall clock time and date at job start Sun Mar 29 2020 22:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00209 * 2 1 4 4 H 1.48504 * 109.47126 * 240.00135 * 3 2 1 5 5 H 1.48500 * 109.47033 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47410 * 119.99627 * 3 2 1 7 7 C 1.37880 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99644 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99814 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46936 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.47166 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47178 * 180.02562 * 11 10 9 13 13 C 1.39028 * 119.99880 * 180.02562 * 12 11 10 14 14 C 1.38823 * 119.66677 * 359.97438 * 13 12 11 15 15 C 1.39131 * 119.00598 * 179.75010 * 14 13 12 16 16 N 1.39196 * 120.82563 * 180.23352 * 15 14 13 17 17 C 1.39694 * 118.35147 * 0.25790 * 15 14 13 18 18 C 1.37738 * 119.23518 * 359.97438 * 17 15 14 19 19 N 1.32088 * 120.93155 * 359.97438 * 18 17 15 20 20 H 0.96999 * 120.00020 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47691 * 59.99914 * 9 7 2 22 22 H 1.09002 * 109.47477 * 299.99714 * 9 7 2 23 23 H 1.08999 * 109.47489 * 60.00035 * 10 9 7 24 24 H 1.09005 * 109.46823 * 299.99419 * 10 9 7 25 25 H 1.08999 * 109.47000 * 59.99598 * 11 10 9 26 26 H 1.08997 * 109.46816 * 299.99661 * 11 10 9 27 27 H 0.96999 * 119.99736 * 359.97438 * 12 11 10 28 28 H 1.08002 * 120.50036 * 0.03377 * 14 13 12 29 29 H 0.97006 * 119.99837 * 0.02562 * 16 15 14 30 30 H 0.96998 * 120.00410 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.38034 * 179.97438 * 17 15 14 32 32 H 1.07992 * 119.53064 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1007 0.0005 13 6 1.9687 -7.4114 -0.0005 14 6 0.6024 -7.6571 -0.0015 15 6 0.1537 -8.9741 -0.0077 16 7 -1.2077 -9.2638 -0.0138 17 6 1.1035 -9.9985 -0.0072 18 6 2.4423 -9.6746 -0.0011 19 7 2.8357 -8.4137 0.0037 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8719 -3.6044 0.8905 24 1 2.8718 -3.6043 -0.8896 25 1 0.8538 -5.0446 -0.8903 26 1 0.8533 -5.0451 0.8897 27 1 3.3858 -5.9234 0.0008 28 1 -0.1018 -6.8382 -0.0021 29 1 -1.8570 -8.5430 -0.0141 30 1 -1.5073 -10.1863 -0.0178 31 1 0.7917 -11.0324 -0.0116 32 1 3.1806 -10.4627 -0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157638065.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:41 Heat of formation + Delta-G solvation = -3.035229 kcal Electronic energy + Delta-G solvation = -13966.487089 eV Core-core repulsion = 11539.013451 eV Total energy + Delta-G solvation = -2427.473637 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.99361 -37.75362 -36.18513 -35.30066 -33.26046 -30.56354 -30.43775 -28.09391 -25.25143 -23.78294 -22.85728 -21.97778 -18.68919 -18.59576 -18.14398 -16.73691 -16.54104 -16.39395 -16.25163 -15.73572 -15.04380 -14.86695 -14.56147 -14.22172 -13.71003 -13.67016 -12.79700 -12.70215 -12.48129 -12.43581 -12.32818 -11.72712 -11.47464 -11.21350 -10.84917 -10.54611 -10.28504 -8.93993 -8.58024 -8.20226 -6.30928 0.58091 0.85312 1.41343 1.43908 1.51778 2.27889 2.43242 2.96185 3.13558 3.17306 3.90415 4.13524 4.22276 4.33529 4.38235 4.54278 4.59219 4.82437 4.95307 5.01006 5.09401 5.15359 5.28954 5.49799 5.71213 5.71267 5.83578 6.08762 6.24809 6.51011 6.75516 6.85503 6.96229 7.38241 7.46609 8.91445 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059229 B = 0.004425 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.631840 B = 6326.448197 C = 6773.327170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.028 3.972 10 C -0.105 4.105 11 C 0.144 3.856 12 N -0.723 5.723 13 C 0.418 3.582 14 C -0.342 4.342 15 C 0.283 3.717 16 N -0.852 5.852 17 C -0.310 4.310 18 C 0.171 3.829 19 N -0.611 5.611 20 H 0.264 0.736 21 H -0.003 1.003 22 H -0.003 1.003 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.404 0.596 28 H 0.124 0.876 29 H 0.406 0.594 30 H 0.413 0.587 31 H 0.154 0.846 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.324 -19.181 -0.038 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.143 4.143 11 C 0.019 3.981 12 N -0.354 5.354 13 C 0.183 3.817 14 C -0.373 4.373 15 C 0.167 3.833 16 N -0.391 5.391 17 C -0.338 4.338 18 C 0.014 3.986 19 N -0.333 5.333 20 H 0.073 0.927 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.239 0.761 28 H 0.142 0.858 29 H 0.236 0.764 30 H 0.244 0.756 31 H 0.172 0.828 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.254 -18.709 -0.032 18.710 hybrid contribution -0.792 0.976 -0.006 1.256 sum -0.538 -17.733 -0.038 17.741 Atomic orbital electron populations 1.70076 1.07724 1.27867 1.51524 1.25946 0.95762 1.03265 0.94685 0.85519 0.78293 0.78202 0.79150 1.19237 1.20828 1.19250 1.21652 0.93601 0.92330 1.50780 0.92149 1.18910 0.94263 0.92438 0.95389 1.21591 0.98651 0.92593 1.01448 1.21278 0.91589 0.84522 1.00672 1.44638 1.09447 1.01450 1.79902 1.18290 0.88946 0.85768 0.88693 1.20824 0.94979 0.96811 1.24668 1.17834 0.86081 0.92274 0.87127 1.42368 1.02451 1.11886 1.82377 1.21524 0.93260 0.99674 1.19297 1.22618 0.94988 0.91723 0.89266 1.67229 1.38673 1.00580 1.26856 0.92732 0.98442 0.98434 0.92248 0.92255 0.92543 0.92558 0.76097 0.85832 0.76421 0.75630 0.82816 0.80305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -30.82 9.11 25.60 0.23 -30.59 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.10 -4.21 5.27 30.60 0.16 -4.05 16 11 C 0.14 4.98 4.89 86.38 0.42 5.40 16 12 N -0.72 -23.39 5.73 -345.22 -1.98 -25.37 16 13 C 0.42 13.38 7.65 132.94 1.02 14.39 16 14 C -0.34 -9.88 9.21 22.62 0.21 -9.67 16 15 C 0.28 6.50 6.81 38.54 0.26 6.76 16 16 N -0.85 -12.94 9.08 -51.05 -0.46 -13.40 16 17 C -0.31 -6.36 9.99 22.50 0.22 -6.13 16 18 C 0.17 3.98 11.16 84.54 0.94 4.93 16 19 N -0.61 -18.63 10.39 -193.56 -2.01 -20.64 16 20 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 21 H 0.00 -0.16 8.14 -2.39 -0.02 -0.17 16 22 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 23 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 25 H 0.06 1.96 7.92 -2.39 -0.02 1.94 16 26 H 0.06 1.96 7.93 -2.39 -0.02 1.94 16 27 H 0.40 12.51 8.60 -92.71 -0.80 11.71 16 28 H 0.12 3.56 6.70 -2.91 -0.02 3.54 16 29 H 0.41 5.50 8.86 -92.70 -0.82 4.68 16 30 H 0.41 3.96 8.86 -92.71 -0.82 3.14 16 31 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.18 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -67.20 277.46 0.65 -66.55 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -1.29 Total: 19.58 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 4.08 Total: -16.84 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -4.17 Total: -115.35 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.20 0.65 -66.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638065.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.518 kcal (2) G-P(sol) polarization free energy of solvation -67.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds