Wall clock time and date at job start Sun Mar 29 2020 22:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.38996 * 119.99939 * 180.02562 * 12 11 10 14 14 C 1.39004 * 119.65784 * 359.72508 * 13 12 11 15 15 C 1.38513 * 119.25985 * 179.75121 * 14 13 12 16 16 C 1.38555 * 118.58381 * 0.51430 * 15 14 13 17 17 C 1.38956 * 119.26352 * 359.73239 * 16 15 14 18 18 N 1.38995 * 119.65911 * 179.97438 * 17 16 15 19 19 N 1.32466 * 119.65889 * 179.97438 * 13 12 11 20 20 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 22 22 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 23 23 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 24 24 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 25 25 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 26 26 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 27 27 H 0.96998 * 120.00192 * 359.97438 * 12 11 10 28 28 H 1.08003 * 120.37173 * 0.02562 * 14 13 12 29 29 H 1.07995 * 120.70297 * 180.24068 * 15 14 13 30 30 H 1.07998 * 120.36299 * 179.74754 * 16 15 14 31 31 H 0.96993 * 120.00258 * 180.02562 * 18 17 16 32 32 H 0.97002 * 119.99840 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4321 -6.1007 0.0018 13 6 1.9687 -7.4111 0.0019 14 6 0.6006 -7.6570 0.0072 15 6 0.1479 -8.9660 0.0021 16 6 1.0812 -9.9902 0.0026 17 6 2.4347 -9.6758 0.0027 18 7 3.3779 -10.6967 0.0037 19 7 2.8355 -8.4129 0.0020 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8904 23 1 2.8718 -3.6044 0.8905 24 1 2.8717 -3.6045 -0.8894 25 1 0.8537 -5.0446 0.8914 26 1 0.8531 -5.0451 -0.8886 27 1 3.3857 -5.9235 0.0014 28 1 -0.1016 -6.8364 0.0108 29 1 -0.9099 -9.1837 0.0021 30 1 0.7601 -11.0213 0.0028 31 1 4.3240 -10.4829 0.0042 32 1 3.0900 -11.6230 0.0041 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157638218.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:15 Heat of formation + Delta-G solvation = 2.240629 kcal Electronic energy + Delta-G solvation = -13922.001524 eV Core-core repulsion = 11494.756665 eV Total energy + Delta-G solvation = -2427.244859 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03716 -37.86932 -35.83876 -34.74816 -33.47767 -32.31233 -29.33449 -28.02418 -25.15100 -23.91493 -22.85179 -21.94160 -18.70599 -18.57714 -18.13602 -16.67097 -16.53643 -16.47528 -16.39530 -15.77404 -15.20874 -14.96743 -14.25259 -13.87103 -13.77649 -13.64966 -12.88184 -12.81672 -12.46302 -12.30653 -12.11253 -11.54086 -11.47752 -11.19762 -10.92730 -10.54480 -10.38223 -9.50029 -8.27147 -8.19715 -6.30296 0.68824 0.70653 1.41591 1.42447 1.53541 2.13191 2.42523 2.94622 3.14049 3.15706 3.97952 4.16393 4.24014 4.30473 4.52096 4.54678 4.63088 4.74510 4.96969 5.02681 5.15430 5.18727 5.50643 5.58941 5.67035 5.72616 5.84715 6.03405 6.24602 6.47290 6.62880 6.86056 6.89241 7.38814 7.53876 8.92134 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.076221 B = 0.004180 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.263714 B = 6697.104789 C = 7038.619378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.105 4.105 11 C 0.143 3.857 12 N -0.722 5.722 13 C 0.428 3.572 14 C -0.317 4.317 15 C 0.003 3.997 16 C -0.304 4.304 17 C 0.428 3.572 18 N -0.840 5.840 19 N -0.629 5.629 20 H 0.264 0.736 21 H -0.002 1.002 22 H -0.002 1.002 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.402 0.598 28 H 0.127 0.873 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.404 0.596 32 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.191 -20.099 0.002 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.143 4.143 11 C 0.019 3.981 12 N -0.353 5.353 13 C 0.191 3.809 14 C -0.344 4.344 15 C -0.023 4.023 16 C -0.331 4.331 17 C 0.188 3.812 18 N -0.385 5.385 19 N -0.359 5.359 20 H 0.073 0.927 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.237 0.763 28 H 0.145 0.855 29 H 0.175 0.825 30 H 0.170 0.830 31 H 0.234 0.766 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 3.719 -19.648 0.007 19.997 hybrid contribution -0.024 0.790 -0.012 0.790 sum 3.695 -18.858 -0.006 19.217 Atomic orbital electron populations 1.70085 1.07709 1.27798 1.51578 1.25956 0.95774 1.03283 0.94748 0.85460 0.78663 0.78548 0.78456 1.19827 1.20763 1.18835 1.21681 0.93583 0.92346 1.50644 0.92181 1.18917 0.94276 0.92394 0.95478 1.21587 0.98649 0.92625 1.01401 1.21321 0.91523 0.84275 1.01012 1.44669 1.09505 1.01392 1.79760 1.18159 0.89203 0.84899 0.88604 1.21319 0.94044 0.99208 1.19827 1.21369 1.00860 0.90750 0.89284 1.21285 0.91161 1.01443 1.19190 1.18259 0.88798 0.86112 0.87985 1.42154 1.07567 1.06067 1.82730 1.66400 1.39400 0.99245 1.30855 0.92734 0.98370 0.98353 0.92306 0.92282 0.92254 0.92252 0.76260 0.85528 0.82498 0.82973 0.76647 0.74664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.74 9.11 25.60 0.23 -30.50 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.10 -4.17 5.27 30.60 0.16 -4.01 16 11 C 0.14 4.89 4.89 86.38 0.42 5.31 16 12 N -0.72 -23.05 5.73 -345.14 -1.98 -25.03 16 13 C 0.43 13.63 7.65 133.01 1.02 14.64 16 14 C -0.32 -9.12 9.32 22.52 0.21 -8.91 16 15 C 0.00 0.06 10.16 22.41 0.23 0.29 16 16 C -0.30 -6.46 9.93 22.52 0.22 -6.24 16 17 C 0.43 10.47 7.74 132.99 1.03 11.50 16 18 N -0.84 -13.36 9.07 -55.50 -0.50 -13.87 16 19 N -0.63 -19.19 10.42 -190.69 -1.99 -21.18 16 20 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 21 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 22 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 23 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.06 2.03 7.91 -2.39 -0.02 2.02 16 26 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16 27 H 0.40 12.31 8.60 -92.71 -0.80 11.51 16 28 H 0.13 3.60 6.69 -2.91 -0.02 3.58 16 29 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.40 6.00 8.95 -92.71 -0.83 5.17 16 32 H 0.42 3.88 8.82 -92.71 -0.82 3.06 16 Total: -1.00 -66.90 277.49 0.68 -66.22 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -1.30 Total: 19.62 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 4.13 Total: -15.89 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -4.18 Total: -116.06 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -66.90 0.68 -66.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638218.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.463 kcal (2) G-P(sol) polarization free energy of solvation -66.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds