Wall clock time and date at job start Sun Mar 29 2020 22:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46875 * 2 1 4 4 H 1.08995 * 109.47215 * 305.79324 * 3 2 1 5 5 C 1.50706 * 109.46854 * 185.79221 * 3 2 1 6 6 H 1.07996 * 119.99715 * 335.22381 * 5 3 2 7 7 C 1.37873 * 119.99788 * 155.22172 * 5 3 2 8 8 N 1.31517 * 120.00164 * 355.34607 * 7 5 3 9 9 Si 1.86799 * 119.99852 * 175.33952 * 7 5 3 10 10 H 1.48501 * 109.46965 * 89.99873 * 9 7 5 11 11 H 1.48497 * 109.47454 * 210.00073 * 9 7 5 12 12 H 1.48503 * 109.47391 * 330.00211 * 9 7 5 13 13 N 1.46504 * 109.47115 * 65.79637 * 3 2 1 14 14 C 1.39034 * 119.99747 * 274.99564 * 13 3 2 15 15 C 1.38822 * 119.66628 * 359.72896 * 14 13 3 16 16 C 1.39127 * 119.00447 * 179.71277 * 15 14 13 17 17 N 1.39197 * 120.82552 * 180.26246 * 16 15 14 18 18 C 1.39689 * 118.35240 * 0.54822 * 16 15 14 19 19 C 1.37734 * 119.23526 * 359.73087 * 18 16 15 20 20 N 1.32089 * 120.93240 * 359.97438 * 19 18 16 21 21 H 1.09001 * 109.47191 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47005 * 300.00272 * 1 2 3 23 23 H 1.08998 * 109.46890 * 59.99856 * 1 2 3 24 24 H 1.09000 * 109.47018 * 240.00285 * 2 1 3 25 25 H 1.08998 * 109.46890 * 120.00144 * 2 1 3 26 26 H 0.96998 * 120.00086 * 5.26515 * 8 7 5 27 27 H 0.97002 * 120.00071 * 94.99578 * 13 3 2 28 28 H 1.08002 * 120.49855 * 359.97438 * 15 14 13 29 29 H 0.96999 * 120.00241 * 180.29653 * 17 16 15 30 30 H 0.97005 * 120.00024 * 0.29101 * 17 16 15 31 31 H 1.07997 * 120.38433 * 179.75933 * 18 16 15 32 32 H 1.08001 * 119.53347 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5944 1.9854 -0.8335 5 6 3.5402 1.4449 -0.1434 6 1 4.1136 0.5839 0.1666 7 6 4.1805 2.5463 -0.6704 8 7 3.4774 3.5573 -1.1323 9 14 6.0468 2.6029 -0.7282 10 1 6.5200 2.0236 -2.0110 11 1 6.5029 4.0121 -0.6232 12 1 6.6011 1.8176 0.4038 13 7 1.6688 2.0917 1.2598 14 6 0.4148 2.6759 1.3977 15 6 -0.4782 2.6450 0.3352 16 6 -1.7316 3.2286 0.4902 17 7 -2.6583 3.2146 -0.5484 18 6 -2.0349 3.8341 1.7119 19 6 -1.0934 3.8292 2.7172 20 7 0.0859 3.2612 2.5402 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.5125 3.5624 -1.0333 27 1 2.2980 2.1139 1.9978 28 1 -0.2055 2.1714 -0.5963 29 1 -3.5272 3.6288 -0.4287 30 1 -2.4351 2.7907 -1.3919 31 1 -2.9967 4.3004 1.8666 32 1 -1.3230 4.2957 3.6639 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161048234.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:47 Heat of formation + Delta-G solvation = 27.848584 kcal Electronic energy + Delta-G solvation = -15198.090307 eV Core-core repulsion = 12771.955892 eV Total energy + Delta-G solvation = -2426.134415 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.55683 -36.44160 -34.77725 -32.55280 -31.46040 -29.17419 -28.83837 -26.09003 -23.18733 -22.78477 -21.43081 -19.95569 -17.55559 -16.98906 -16.57057 -15.29654 -14.77796 -14.60799 -14.00905 -13.81113 -13.37461 -13.28406 -12.91121 -12.56796 -12.34221 -11.35729 -11.16339 -10.97647 -10.85990 -10.80265 -10.33422 -10.19120 -9.93233 -9.11913 -8.81924 -8.65240 -8.46219 -7.51687 -6.62944 -6.55583 -4.37448 2.15779 2.42721 3.34446 3.39324 3.55164 4.08917 4.33591 4.43446 4.78507 5.29324 5.38052 5.74105 5.82333 5.91455 5.99365 6.07742 6.13142 6.32988 6.55722 6.60790 6.64602 6.75891 6.80441 6.92574 7.15808 7.26132 7.76683 7.82805 8.01935 8.21380 8.28545 8.62560 8.88312 9.22856 9.42886 10.80938 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033280 B = 0.008605 C = 0.008076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.142141 B = 3253.293680 C = 3466.384757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.248 3.752 4 H 0.046 0.954 5 C -0.608 4.608 6 H 0.057 0.943 7 C 0.032 3.968 8 N -0.888 5.888 9 Si 1.072 2.928 10 H -0.286 1.286 11 H -0.283 1.283 12 H -0.286 1.286 13 N -0.693 5.693 14 C 0.439 3.561 15 C -0.322 4.322 16 C 0.275 3.725 17 N -0.872 5.872 18 C -0.330 4.330 19 C 0.177 3.823 20 N -0.594 5.594 21 H 0.033 0.967 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.276 0.724 27 H 0.391 0.609 28 H 0.132 0.868 29 H 0.394 0.606 30 H 0.396 0.604 31 H 0.113 0.887 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 -1.809 1.626 9.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C 0.147 3.853 4 H 0.064 0.936 5 C -0.646 4.646 6 H 0.075 0.925 7 C -0.177 4.177 8 N -0.521 5.521 9 Si 0.900 3.100 10 H -0.212 1.212 11 H -0.209 1.209 12 H -0.212 1.212 13 N -0.319 5.319 14 C 0.201 3.799 15 C -0.353 4.353 16 C 0.163 3.837 17 N -0.411 5.411 18 C -0.359 4.359 19 C 0.018 3.982 20 N -0.316 5.316 21 H 0.052 0.948 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.226 0.774 28 H 0.149 0.851 29 H 0.222 0.778 30 H 0.224 0.776 31 H 0.131 0.869 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.199 -1.034 1.568 7.440 hybrid contribution -2.056 -0.844 -0.151 2.228 sum -9.255 -1.878 1.417 9.550 Atomic orbital electron populations 1.22193 0.97691 0.99506 1.01547 1.21918 0.93789 0.99614 1.00844 1.18935 0.95472 0.88153 0.82727 0.93585 1.22105 0.90994 1.04202 1.47335 0.92473 1.26012 1.07286 0.92367 0.92001 1.70739 1.09572 1.32276 1.39539 0.83504 0.73741 0.76254 0.76533 1.21205 1.20883 1.21167 1.46721 1.10550 1.56739 1.17923 1.18541 0.86978 0.86507 0.87880 1.20964 0.95027 1.17009 1.02252 1.17655 0.88562 0.89919 0.87580 1.42286 1.17194 1.66438 1.15207 1.20983 1.03050 1.16391 0.95525 1.21913 0.87566 0.91768 0.96971 1.67327 1.20890 1.19159 1.24263 0.94797 0.92213 0.93392 0.92240 0.93212 0.91271 0.77392 0.85054 0.77827 0.77617 0.86861 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.23 37.16 0.31 -2.47 16 2 C -0.12 -2.54 5.58 -26.73 -0.15 -2.69 16 3 C 0.25 5.91 1.92 -69.08 -0.13 5.78 16 4 H 0.05 1.19 4.97 -51.93 -0.26 0.93 16 5 C -0.61 -16.03 8.50 -34.44 -0.29 -16.32 16 6 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.03 0.88 5.45 -17.82 -0.10 0.78 16 8 N -0.89 -25.85 13.62 55.43 0.76 -25.10 16 9 Si 1.07 24.17 29.91 -169.99 -5.08 19.08 16 10 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.69 -16.05 5.19 -55.10 -0.29 -16.34 16 14 C 0.44 9.66 6.51 -155.00 -1.01 8.65 16 15 C -0.32 -6.43 6.59 -39.04 -0.26 -6.69 16 16 C 0.27 4.71 6.81 -83.64 -0.57 4.14 16 17 N -0.87 -11.18 9.08 32.51 0.30 -10.89 16 18 C -0.33 -5.42 9.99 -39.22 -0.39 -5.82 16 19 C 0.18 3.14 11.16 -17.63 -0.20 2.95 16 20 N -0.59 -12.59 10.39 -12.53 -0.13 -12.72 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 1.16 5.37 -51.93 -0.28 0.89 16 23 H 0.05 0.84 6.40 -51.93 -0.33 0.50 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.28 8.12 6.66 -40.82 -0.27 7.85 16 27 H 0.39 9.24 8.72 -40.82 -0.36 8.89 16 28 H 0.13 2.67 3.99 -52.49 -0.21 2.46 16 29 H 0.39 3.98 8.86 -40.82 -0.36 3.61 16 30 H 0.40 4.62 8.86 -40.82 -0.36 4.26 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.14 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 262.44 15.07 3.95 3.95 Total: -1.00 -29.59 262.44 -7.03 -36.62 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -3.75 Total: 17.06 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -2.79 Total: -11.68 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: 0.63 Total: -65.04 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.08 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.59 -7.03 -36.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161048234.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.470 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds