Wall clock time and date at job start Sun Mar 29 2020 22:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46752 * 2 1 4 4 H 1.08997 * 109.47229 * 305.71498 * 3 2 1 5 5 C 1.50698 * 109.46906 * 185.71227 * 3 2 1 6 6 H 1.07997 * 120.00248 * 245.15709 * 5 3 2 7 7 C 1.37880 * 119.99780 * 65.16010 * 5 3 2 8 8 N 1.31508 * 120.00120 * 8.34953 * 7 5 3 9 9 Si 1.86808 * 119.99687 * 188.07343 * 7 5 3 10 10 H 1.48494 * 109.47060 * 90.00118 * 9 7 5 11 11 H 1.48506 * 109.46524 * 209.99933 * 9 7 5 12 12 H 1.48499 * 109.47088 * 329.99783 * 9 7 5 13 13 N 1.46496 * 109.47270 * 65.71607 * 3 2 1 14 14 C 1.38999 * 120.00445 * 204.39544 * 13 3 2 15 15 C 1.39339 * 120.09230 * 354.36198 * 14 13 3 16 16 N 1.31915 * 119.89169 * 179.97438 * 15 14 13 17 17 C 1.32269 * 120.08739 * 359.97438 * 16 15 14 18 18 C 1.38156 * 120.19135 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.94517 * 180.02562 * 18 17 16 20 20 N 1.32247 * 120.10993 * 359.78094 * 18 17 16 21 21 H 1.08999 * 109.47551 * 299.59249 * 1 2 3 22 22 H 1.08994 * 109.47536 * 59.60150 * 1 2 3 23 23 H 1.09009 * 109.47169 * 179.60074 * 1 2 3 24 24 H 1.08997 * 109.46921 * 240.00144 * 2 1 3 25 25 H 1.09000 * 109.47053 * 120.00083 * 2 1 3 26 26 H 0.96995 * 119.99883 * 5.02310 * 8 7 5 27 27 H 0.97003 * 120.00430 * 24.39077 * 13 3 2 28 28 H 1.08004 * 120.05641 * 359.95280 * 15 14 13 29 29 H 1.08000 * 119.90586 * 179.97438 * 17 16 15 30 30 H 1.08997 * 109.47276 * 89.99283 * 19 18 17 31 31 H 1.08998 * 109.47195 * 210.00030 * 19 18 17 32 32 H 1.09004 * 109.46853 * 329.99470 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5954 1.9850 -0.8344 5 6 3.5402 1.4449 -0.1414 6 1 4.1581 1.8103 0.6654 7 6 4.1241 0.9806 -1.3010 8 7 3.3763 0.6903 -2.3431 9 14 5.9780 0.7712 -1.3942 10 1 6.3440 -0.5994 -0.9554 11 1 6.4300 0.9803 -2.7933 12 1 6.6337 1.7663 -0.5082 13 7 1.6671 2.0923 1.2590 14 6 1.5491 3.4759 1.3187 15 6 1.8979 4.2551 0.2175 16 7 1.7839 5.5679 0.2783 17 6 1.3388 6.1443 1.3825 18 6 0.9909 5.3751 2.4761 19 6 0.4838 6.0376 3.7311 20 7 1.0976 4.0581 2.4218 21 1 -0.3634 0.5075 0.8936 22 1 -0.3634 0.5200 -0.8863 23 1 -0.3634 -1.0277 -0.0072 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.4236 0.8712 -2.3219 27 1 1.5025 1.5569 2.0510 28 1 2.2614 3.7850 -0.6844 29 1 1.2469 7.2194 1.4293 30 1 -0.6010 6.1303 3.6802 31 1 0.7568 5.4337 4.5965 32 1 0.9291 7.0282 3.8243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049142.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:36 Heat of formation + Delta-G solvation = 31.480427 kcal Electronic energy + Delta-G solvation = -14936.419813 eV Core-core repulsion = 12510.442886 eV Total energy + Delta-G solvation = -2425.976926 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.38691 -36.81336 -33.90648 -33.38538 -31.78200 -30.12673 -27.19238 -26.42548 -23.50058 -23.11788 -21.94239 -20.16656 -17.45218 -17.12345 -16.39282 -15.79402 -14.68590 -14.41313 -13.86057 -13.54733 -13.28088 -12.95092 -12.65501 -12.38187 -12.24952 -12.15325 -11.43137 -10.97255 -10.88138 -10.83091 -10.67173 -10.38562 -10.18820 -10.12332 -9.68185 -8.70914 -8.49306 -8.46399 -7.04820 -6.47940 -4.28582 1.57489 1.95091 3.36957 3.40752 3.56473 3.80154 4.38002 4.44129 4.84238 5.03824 5.14962 5.20755 5.39867 5.66520 5.72703 5.80801 5.85187 5.95428 5.98715 6.04289 6.33975 6.47647 6.57074 6.62796 6.85146 7.05717 7.12876 7.55068 7.87358 8.12816 8.24271 8.35890 8.61934 8.72160 9.40857 10.82505 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028762 B = 0.008741 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.261932 B = 3202.631124 C = 3757.894092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.263 3.737 4 H 0.035 0.965 5 C -0.614 4.614 6 H 0.056 0.944 7 C 0.030 3.970 8 N -0.902 5.902 9 Si 1.067 2.933 10 H -0.286 1.286 11 H -0.283 1.283 12 H -0.289 1.289 13 N -0.686 5.686 14 C 0.377 3.623 15 C 0.000 4.000 16 N -0.409 5.409 17 C -0.053 4.053 18 C 0.121 3.879 19 C -0.095 4.095 20 N -0.528 5.528 21 H 0.044 0.956 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.271 0.729 27 H 0.392 0.608 28 H 0.173 0.827 29 H 0.152 0.848 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 4.916 7.313 10.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C 0.160 3.840 4 H 0.052 0.948 5 C -0.653 4.653 6 H 0.074 0.926 7 C -0.175 4.175 8 N -0.537 5.537 9 Si 0.895 3.105 10 H -0.213 1.213 11 H -0.209 1.209 12 H -0.215 1.215 13 N -0.313 5.313 14 C 0.135 3.865 15 C -0.171 4.171 16 N -0.121 5.121 17 C -0.213 4.213 18 C -0.021 4.021 19 C -0.154 4.154 20 N -0.253 5.253 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.226 0.774 28 H 0.190 0.810 29 H 0.169 0.831 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.640 4.290 6.106 8.302 hybrid contribution -1.232 0.232 1.355 1.846 sum -4.872 4.522 7.461 9.992 Atomic orbital electron populations 1.21844 0.97964 1.00097 1.00887 1.21902 0.93011 0.99168 1.02763 1.19005 0.95522 0.88950 0.80551 0.94765 1.22331 0.90828 1.47830 1.04295 0.92599 1.25757 1.06850 0.93189 0.91750 1.70797 1.08303 1.44102 1.30518 0.83567 0.74315 0.76580 0.76056 1.21304 1.20887 1.21458 1.45058 1.70886 1.00936 1.14388 1.19440 0.89483 0.87431 0.90152 1.23344 1.04255 0.89181 1.00362 1.68179 1.07656 1.11078 1.25207 1.22876 1.06784 1.00733 0.90894 1.21788 0.94515 0.89348 0.96407 1.20610 1.01124 0.99724 0.93901 1.67764 1.20072 1.11226 1.26279 0.93713 0.93434 0.93920 0.89834 0.92940 0.91744 0.77357 0.80994 0.83073 0.90661 0.90799 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.80 37.16 0.36 -2.29 16 2 C -0.13 -2.69 5.18 -26.73 -0.14 -2.83 16 3 C 0.26 5.95 1.26 -69.09 -0.09 5.87 16 4 H 0.03 0.84 6.06 -51.93 -0.31 0.53 16 5 C -0.61 -15.84 8.20 -34.44 -0.28 -16.12 16 6 H 0.06 1.52 7.83 -52.49 -0.41 1.11 16 7 C 0.03 0.80 5.17 -17.82 -0.09 0.71 16 8 N -0.90 -24.83 12.81 55.43 0.71 -24.12 16 9 Si 1.07 24.11 29.91 -169.99 -5.08 19.02 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.69 -14.23 4.73 -54.95 -0.26 -14.49 16 14 C 0.38 7.95 7.63 -154.74 -1.18 6.76 16 15 C 0.00 -0.01 10.21 -17.11 -0.17 -0.18 16 16 N -0.41 -8.29 10.49 -12.88 -0.14 -8.43 16 17 C -0.05 -0.91 10.86 -17.39 -0.19 -1.10 16 18 C 0.12 2.02 6.78 -82.44 -0.56 1.46 16 19 C -0.10 -1.10 10.19 36.01 0.37 -0.74 16 20 N -0.53 -10.25 10.45 -8.48 -0.09 -10.34 16 21 H 0.04 0.75 7.79 -51.93 -0.40 0.35 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 24 H 0.08 1.92 6.41 -51.93 -0.33 1.59 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.27 7.36 6.33 -40.82 -0.26 7.10 16 27 H 0.39 7.57 8.72 -40.82 -0.36 7.21 16 28 H 0.17 4.00 6.14 -52.48 -0.32 3.68 16 29 H 0.15 2.03 8.06 -52.49 -0.42 1.60 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 LS Contribution 271.13 15.07 4.09 4.09 Total: -1.00 -28.22 271.13 -6.90 -35.12 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.15 Total: 7.62 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.97 Total: -8.47 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.23 Total: -57.38 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.08 Total: 19.02 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.22 -6.90 -35.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049142.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.598 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds